BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0564.0073.p
         (78 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJ70.1 B3KJ70_9BACI Putative uncharacterized protein                127   3e-28
B1D977.1 B1D977_9BACL Putative uncharacterized protein                119   6e-26
B7VDU3.1 B7VDU3_9BACT Putative integron gene cassette protein          63   9e-09
B7I7Y6.1 B7I7Y6_ACIB5 Putative uncharacterized protein                 59   1e-07
B7GYH9.1 B7GYH9_ACIB3 Putative uncharacterized protein                 59   1e-07

>B3KJ70.1 B3KJ70_9BACI Putative uncharacterized protein
          Length = 67

 Score =  127 bits (319), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/67 (88%), Positives = 63/67 (94%)

Query: 12 MVKEIRFTGTLYQTAAIEYVKANFGEQFVFVNENGNASLSKDVKKAFRKLHGGRIAWDRD 71
          MV+EIRFTG LYQT AI YV+ NFGE+FVFVNENGNASLSKDVKKAFRKLHGGRIAWDRD
Sbjct: 1  MVEEIRFTGNLYQTEAIRYVRENFGEEFVFVNENGNASLSKDVKKAFRKLHGGRIAWDRD 60

Query: 72 GFLWAWT 78
          GF+WAWT
Sbjct: 61 GFMWAWT 67


>B1D977.1 B1D977_9BACL Putative uncharacterized protein
          Length = 79

 Score =  119 bits (299), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 54/76 (71%), Positives = 61/76 (80%)

Query: 3  ATAQEVAEWMVKEIRFTGTLYQTAAIEYVKANFGEQFVFVNENGNASLSKDVKKAFRKLH 62
           T Q +AEWMV EI+F G L Q  AIE+VK  FGEQ++FVNENGN SL K+VKKAFRKLH
Sbjct: 4  TTEQHIAEWMVNEIKFRGMLRQEEAIEHVKQQFGEQYIFVNENGNVSLEKEVKKAFRKLH 63

Query: 63 GGRIAWDRDGFLWAWT 78
           GR+AWDRDGF WAWT
Sbjct: 64 KGRVAWDRDGFFWAWT 79


>B7VDU3.1 B7VDU3_9BACT Putative integron gene cassette protein
          Length = 90

 Score = 62.8 bits (151), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 43/75 (57%)

Query: 1  MEATAQEVAEWMVKEIRFTGTLYQTAAIEYVKANFGEQFVFVNENGNASLSKDVKKAFRK 60
          M  TA++VAEWM  +   T  +YQ   +  +K  FG  FV+ N +GN ++ KDV K FRK
Sbjct: 1  MMTTARDVAEWMAAQFATTTYIYQETIVYKIKNEFGADFVYSNASGNLAIGKDVLKEFRK 60

Query: 61 LHGGRIAWDRDGFLW 75
          L  G + W+R    W
Sbjct: 61 LTEGVVIWERSEKAW 75


>B7I7Y6.1 B7I7Y6_ACIB5 Putative uncharacterized protein
          Length = 92

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 43/72 (59%)

Query: 4  TAQEVAEWMVKEIRFTGTLYQTAAIEYVKANFGEQFVFVNENGNASLSKDVKKAFRKLHG 63
          TA +VA+WMVKE+     LY   A+  ++  FG+ FV  NENGN ++SK V K FRKL  
Sbjct: 5  TAIDVAKWMVKELDEQEFLYPEWAVWEIQEIFGDDFVSENENGNLTISKVVLKEFRKLTE 64

Query: 64 GRIAWDRDGFLW 75
          G + W R    W
Sbjct: 65 GEVVWMRSEKAW 76


>B7GYH9.1 B7GYH9_ACIB3 Putative uncharacterized protein
          Length = 92

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 43/72 (59%)

Query: 4  TAQEVAEWMVKEIRFTGTLYQTAAIEYVKANFGEQFVFVNENGNASLSKDVKKAFRKLHG 63
          TA +VA+WMVKE+     LY   A+  ++  FG+ FV  NENGN ++SK V K FRKL  
Sbjct: 5  TAIDVAKWMVKELDEQEFLYPEWAVWEIQEIFGDDFVSENENGNLTISKVVLKEFRKLTE 64

Query: 64 GRIAWDRDGFLW 75
          G + W R    W
Sbjct: 65 GEVVWMRSEKAW 76


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.132    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 478,872,061
Number of extensions: 15434939
Number of successful extensions: 38911
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 38911
Number of HSP's successfully gapped: 7
Length of query: 78
Length of database: 3,060,696,203
Length adjustment: 49
Effective length of query: 29
Effective length of database: 2,599,066,468
Effective search space: 75372927572
Effective search space used: 75372927572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)