BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0070.p (266 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1HR54.1 B1HR54_LYSSC ABC transporter permease protein 196 1e-48 A3IC90.1 A3IC90_9BACI ABC transporter permease protein 193 1e-47 B9E9Y8.1 B9E9Y8_MACCJ Putative uncharacterized protein 188 4e-46 Q48L86.1 Q48L86_PSE14 Polyamine ABC transporter, permease protei... 182 4e-44 C0ZH60.1 C0ZH60_BREBN ABC transporter permease protein 181 5e-44 >B1HR54.1 B1HR54_LYSSC ABC transporter permease protein Length = 261 Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 103/237 (43%), Positives = 153/237 (64%), Gaps = 3/237 (1%) Query: 27 ATGLYAFAQDWQNTLLPRSWTLGWFRDMFQDIRFLEALWTSLYLCIISVLLSLAVMLPAV 86 AT LYAFA W +T+LP +TL WF +FQD F++A S+ L +V ++L V++PA+ Sbjct: 24 ATMLYAFASKWNSTILPEGFTLKWFSTLFQDSEFIQAFGRSVLLAGGAVSIALLVIVPAI 83 Query: 87 FVITVYFPRWESFMKGIXXXXXXXXXXXXXXXXIRTYSSGPFDISGTAYLLVGAYFVVIL 146 FVI +YFP +E +++ IR YS + ++++GAY V IL Sbjct: 84 FVIVLYFPTYEKWIQMAVVMVYSFPGIILAVGLIRVYSQIGIPM---IFVVLGAYVVGIL 140 Query: 147 PYMYQGIRNSLLSVSAVELLNAAELLGARRRSAFVNVILPNIWPGVMVSALLSFSVLFGE 206 PY+YQG RNSL ++ A +LL+AA+LLGA +R AF ++LP ++PG+ ALLSFSVLFGE Sbjct: 141 PYIYQGTRNSLRNIDARQLLDAAQLLGASKRQAFTKILLPTVYPGLFAGALLSFSVLFGE 200 Query: 207 FVLTNMLVGGHIQTIQVYLFRRVGESGHLASAIAISYFVFILLLSAVLMKLGMKIKG 263 FVL N++VG +T+Q+YL +++ SGH+ASA+ Y V + LL+ V+ + + KG Sbjct: 201 FVLINLVVGSRFETVQIYLMKKLSTSGHIASAVVFIYIVLMGLLTFVIALVTKRSKG 257 >A3IC90.1 A3IC90_9BACI ABC transporter permease protein Length = 236 Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 101/234 (43%), Positives = 150/234 (64%), Gaps = 3/234 (1%) Query: 30 LYAFAQDWQNTLLPRSWTLGWFRDMFQDIRFLEALWTSLYLCIISVLLSLAVMLPAVFVI 89 LYAFA W T+LP +TL WF +FQD F++A S+ L +V ++L V++PA+FVI Sbjct: 2 LYAFASKWNKTILPEGFTLKWFTALFQDSDFIQAFGRSVLLAGGAVSIALLVIVPAIFVI 61 Query: 90 TVYFPRWESFMKGIXXXXXXXXXXXXXXXXIRTYSSGPFDISGTAYLLVGAYFVVILPYM 149 +YFP +E +++ IR YS + ++++GAY V ILPY+ Sbjct: 62 VLYFPTYEKWIQMAVVMVYSFPGIILAVGLIRVYSQIGIPM---IFVVLGAYVVGILPYI 118 Query: 150 YQGIRNSLLSVSAVELLNAAELLGARRRSAFVNVILPNIWPGVMVSALLSFSVLFGEFVL 209 YQG RNSL ++ A +LL+AA+LLGA +R AF ++LP ++PG+ ALLSFSVLFGEFVL Sbjct: 119 YQGTRNSLRNIDARQLLDAAQLLGASKRQAFTKILLPTVYPGLFAGALLSFSVLFGEFVL 178 Query: 210 TNMLVGGHIQTIQVYLFRRVGESGHLASAIAISYFVFILLLSAVLMKLGMKIKG 263 N++VG +T+Q+YL +++ SGH+ASA+ Y V + LL+ V+ + + KG Sbjct: 179 INLVVGSRFETVQIYLMKKLSTSGHIASAVVFIYIVLMGLLTFVIAIVTKRSKG 232 >B9E9Y8.1 B9E9Y8_MACCJ Putative uncharacterized protein Length = 264 Score = 188 bits (478), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 154/240 (64%), Gaps = 4/240 (1%) Query: 27 ATGLYAFAQDWQNTLLPRSWTLGWFRDMFQDIRFLEALWTSLYLCIISVLLSLAVMLPAV 86 AT LY+ + DW ++LP T W+ ++F + FL A+ SL L + ++ +M+PA+ Sbjct: 23 ATFLYSISTDWSRSILPEGITFKWYGELFTNNDFLHAMINSLILVGGVTIAAVIIMVPAI 82 Query: 87 FVITVYFPRWESFMKGIXXXXXXXXXXXXXXXXIRTYSSGPFDISGTAYLLVGAYFVVIL 146 + I +YFP+ E F+K ++ YS+ + +++ GAY V IL Sbjct: 83 YGIVLYFPKLERFIKWAIIGVYTMPGIISSVGLLKAYSNSSIPM---VFIVAGAYLVSIL 139 Query: 147 PYMYQGIRNSLLSVSAVELLNAAELLGARRRSAFVNVILPNIWPGVMVSALLSFSVLFGE 206 P+MYQGIRN++ +++ V+L+ AAE+LGA + AF +ILPNI PGV+VSALLSFS+LFGE Sbjct: 140 PFMYQGIRNNMRNINVVQLVEAAEILGATKMQAFQKIILPNILPGVIVSALLSFSLLFGE 199 Query: 207 FVLTNMLVGGHIQTIQVYLFRRVGESGHLASAIAISYFVFILLLSAVLMKLGMKIKGQAK 266 FV+ N+L+G + +T+Q++L + ++GHL+SAI YFV + +++ +++KL M KG K Sbjct: 200 FVMINILLGSNFKTVQIFLMENLQKNGHLSSAIVACYFVLLAVVTFIILKLTMH-KGVKK 258 >Q48L86.1 Q48L86_PSE14 Polyamine ABC transporter, permease protein, putative Length = 265 Score = 182 bits (461), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 96/248 (38%), Positives = 146/248 (58%) Query: 4 RKAGVAPRTFMXXXXXXXXXXXXATGLYAFAQDWQNTLLPRSWTLGWFRDMFQDIRFLEA 63 R AG+ +T + T LY+ + W T+LP T W+ ++ D RFL A Sbjct: 7 RHAGIYHKTVVYLLFLILLLPLAGTFLYSISTSWSATILPSGLTFKWYVALWSDPRFLAA 66 Query: 64 LWTSLYLCIISVLLSLAVMLPAVFVITVYFPRWESFMKGIXXXXXXXXXXXXXXXXIRTY 123 SL +C+ +++LS+ ++LP +FV+ YFPR + M + ++ Y Sbjct: 67 FGQSLLVCVGALILSVVLILPLLFVVHYYFPRLDGLMNILILLPFAVPPVVSSVGLLQLY 126 Query: 124 SSGPFDISGTAYLLVGAYFVVILPYMYQGIRNSLLSVSAVELLNAAELLGARRRSAFVNV 183 SGP + GT ++L+G YF V LP+MY+ I N+L +++ +L++AA+LLGA A V Sbjct: 127 GSGPMAMVGTPWILIGCYFTVALPFMYRAITNNLQAINLTDLMDAAQLLGASTWQAAFMV 186 Query: 184 ILPNIWPGVMVSALLSFSVLFGEFVLTNMLVGGHIQTIQVYLFRRVGESGHLASAIAISY 243 +LPN+ G+M++ LLSFS LFGEFV N+LVG +T+QVYL SGH SA+ ISY Sbjct: 187 VLPNLRKGLMIALLLSFSFLFGEFVFANLLVGTRYETLQVYLNNMRNSSGHFNSALVISY 246 Query: 244 FVFILLLS 251 F+F+L+L+ Sbjct: 247 FLFVLVLT 254 >C0ZH60.1 C0ZH60_BREBN ABC transporter permease protein Length = 262 Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 100/230 (43%), Positives = 149/230 (64%), Gaps = 3/230 (1%) Query: 27 ATGLYAFAQDWQNTLLPRSWTLGWFRDMFQDIRFLEALWTSLYLCIISVLLSLAVMLPAV 86 AT LY+ A +W +T+LP T WF +++ D RFL+A S L ++ ++++ +++PAV Sbjct: 24 ATILYSLATEWNSTVLPEGLTGKWFAELYADPRFLQAFGRSFLLSFLTTVVAVVIIVPAV 83 Query: 87 FVITVYFPRWESFMKGIXXXXXXXXXXXXXXXXIRTYSSGPFDISGTAYLLVGAYFVVIL 146 F I VY PR E ++ + IRTYS + + GAY V +L Sbjct: 84 FSIIVYAPRMERLVQILVMLTYAVPGVIMAVGLIRTYSGNGIPM---VIITAGAYLVGLL 140 Query: 147 PYMYQGIRNSLLSVSAVELLNAAELLGARRRSAFVNVILPNIWPGVMVSALLSFSVLFGE 206 PY+YQG RNSLL++ A L+ AAELLGA AFV +I+PNI G+ VS+LLSFS+LFGE Sbjct: 141 PYLYQGTRNSLLAMQARSLMEAAELLGASHWQAFVRIIVPNIMSGIFVSSLLSFSILFGE 200 Query: 207 FVLTNMLVGGHIQTIQVYLFRRVGESGHLASAIAISYFVFILLLSAVLMK 256 FVL N+LVGG +T+Q+YL+ ++ SGH+ASAI ++YFV + +++ +++K Sbjct: 201 FVLINILVGGRYETLQMYLYAKLSSSGHVASAITVTYFVLMAIITGLVVK 250 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.142 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,256,259,095 Number of extensions: 42473247 Number of successful extensions: 161014 Number of sequences better than 1.0e-05: 713 Number of HSP's gapped: 162859 Number of HSP's successfully gapped: 713 Length of query: 266 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 133 Effective length of database: 1,807,701,208 Effective search space: 240424260664 Effective search space used: 240424260664 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)