BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0069.p (307 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZH59.1 C0ZH59_BREBN ABC transporter permease protein 250 1e-64 B1HR53.1 B1HR53_LYSSC ABC transporter permease protein 238 6e-61 A3IC91.1 A3IC91_9BACI ABC transporter permease protein 237 1e-60 A4XRX9.1 A4XRX9_PSEMY Binding-protein-dependent transport system... 229 3e-58 A3KWS3.1 A3KWS3_PSEAE Putative uncharacterized protein 220 1e-55 >C0ZH59.1 C0ZH59_BREBN ABC transporter permease protein Length = 281 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 123/264 (46%), Positives = 168/264 (63%) Query: 14 PFVLMVLAFQVVPVFSMLTGSFRHADGAGFTLDNYRHALSSAYYQQAIKNSLLISVFSSL 73 PF M+ F +VP+ SM+ GSF+ G GFT+ NYR S+ YY QA +NS+LIS S+L Sbjct: 14 PFFAMIALFLLVPLLSMIGGSFQAEGGGGFTISNYREIFSNPYYLQAFENSVLISFLSAL 73 Query: 74 IGLAVGLVCAYCITRFAPAVRDRLLMLSNMTSNFAGVPLAFAYIILLGNNGVFTLLFKQW 133 IG+ V + Y ITRF A++ R+L+++N+TSNFAG+PLAFA+I+LLGN+G+F LL KQ Sbjct: 74 IGIVVAVFATYAITRFPQALQQRVLVITNLTSNFAGIPLAFAFIVLLGNSGLFVLLAKQL 133 Query: 134 GWNVFDGFNLYSWSGLILVYVYFQIPXXXXXXYPAFYGIREQWREAAALLGAGAWQFWKT 193 G + F LYSWSGL LVY+YFQ+P YP + I++QW EAA LLGA W+FW Sbjct: 134 GIDFGQSFTLYSWSGLTLVYIYFQLPLAVMLLYPLYNAIQKQWMEAAELLGASPWEFWLR 193 Query: 194 VGLPVLSPAIFGTLGILFXXXXXXXXXXXXLVGGNYNLLAVRIGSLVAGDVVTQPQMGXX 253 +G PVL P I GT ILF L G NYNL+ +RIG+LV+GD+ +P++G Sbjct: 194 IGFPVLLPGIVGTFSILFANAMGAYASAYALTGSNYNLVPIRIGALVSGDIFARPELGSA 253 Query: 254 XXXXXXXXXXXXXFLNQRMVRRME 277 +N+ + R++ Sbjct: 254 LAVLLGLTLAAALIVNEWLTRKIR 277 >B1HR53.1 B1HR53_LYSSC ABC transporter permease protein Length = 281 Score = 238 bits (606), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 106/222 (47%), Positives = 155/222 (69%), Gaps = 2/222 (0%) Query: 30 MLTGSFRHADGAGFTLDNYRHALSSAYYQQAIKNSLLISVFSSLIGLAVGLVCAYCITRF 89 ML SF+++DG FTL Y+ ++ Y Q KNS+ +S+ S++I L V L Y + +F Sbjct: 32 MLITSFQNSDG--FTLTQYKAVFTNGYILQGFKNSITLSIISAIIALMVTLFAVYAMMKF 89 Query: 90 APAVRDRLLMLSNMTSNFAGVPLAFAYIILLGNNGVFTLLFKQWGWNVFDGFNLYSWSGL 149 + VR+++L+L+N+TSNF+G+PLAFA+I+LLGN+G+FTLLF++W + F+LYSW GL Sbjct: 90 SEPVREKILILTNLTSNFSGIPLAFAFIVLLGNSGLFTLLFEKWDIDALSSFSLYSWGGL 149 Query: 150 ILVYVYFQIPXXXXXXYPAFYGIREQWREAAALLGAGAWQFWKTVGLPVLSPAIFGTLGI 209 +L+Y+YFQ+P YP + GI++QW+EAAALLGA +WQFW+ +GLPV+ P I GT + Sbjct: 150 LLIYIYFQLPLSLMLLYPIYDGIQQQWKEAAALLGASSWQFWRKIGLPVMLPGIVGTFSV 209 Query: 210 LFXXXXXXXXXXXXLVGGNYNLLAVRIGSLVAGDVVTQPQMG 251 LF L NYNL+A+RIGSL+ GD+ QP++ Sbjct: 210 LFANAMGAYASAYALTSSNYNLVAIRIGSLIKGDIFAQPELA 251 >A3IC91.1 A3IC91_9BACI ABC transporter permease protein Length = 281 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 107/222 (48%), Positives = 154/222 (69%), Gaps = 2/222 (0%) Query: 30 MLTGSFRHADGAGFTLDNYRHALSSAYYQQAIKNSLLISVFSSLIGLAVGLVCAYCITRF 89 ML SF+++DG FTL Y+ ++ Y Q KNS+ +SV S++I L V L Y + +F Sbjct: 32 MLITSFQNSDG--FTLAQYKAVFTNGYILQGFKNSITLSVISAIIALMVTLFAVYAMMKF 89 Query: 90 APAVRDRLLMLSNMTSNFAGVPLAFAYIILLGNNGVFTLLFKQWGWNVFDGFNLYSWSGL 149 + VR+++L+L+N+TSNF+G+PLAFA+I+LLGN+G+FTLLF++W + F+LYSW GL Sbjct: 90 SEPVREKILILTNLTSNFSGIPLAFAFIVLLGNSGLFTLLFEKWDIDALSSFSLYSWGGL 149 Query: 150 ILVYVYFQIPXXXXXXYPAFYGIREQWREAAALLGAGAWQFWKTVGLPVLSPAIFGTLGI 209 +L+Y+YFQ+P YP + GI++QW+EAAALLGA +WQFW +GLPV+ P I GT + Sbjct: 150 LLIYIYFQLPLSLMLLYPIYDGIQQQWKEAAALLGASSWQFWMKIGLPVMLPGIVGTFSV 209 Query: 210 LFXXXXXXXXXXXXLVGGNYNLLAVRIGSLVAGDVVTQPQMG 251 LF L NYNL+A+RIGSL+ GD+ QP++ Sbjct: 210 LFANAMGAYASAYALTSSNYNLVAIRIGSLIKGDIFAQPELA 251 >A4XRX9.1 A4XRX9_PSEMY Binding-protein-dependent transport systems inner membrane component Length = 280 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 118/267 (44%), Positives = 167/267 (62%), Gaps = 4/267 (1%) Query: 9 ILALAPFVLMVLAFQVVPVFSMLTGSFRHADGAGFTLDNYRHALSSAYYQQAIKNSLLIS 68 +L L PF L AFQ+ P+ + + S A+G G L N++ A SSA+Y+QA+++SL ++ Sbjct: 12 LLCLVPFALFFFAFQIAPLAWVASNSLNTAEGWG--LGNFQQAFSSAFYRQAMRHSLEVA 69 Query: 69 VFSSLIGLAVGLVCAYCITRFAPAVRDRLLMLSNMTSNFAGVPLAFAYIILLGNNGVFTL 128 +SSL G+ V ++ +Y + + + +RD ++ SNMTSNF+GVPLAFA+IILLG NG T+ Sbjct: 70 FWSSLFGIVVAIIGSYSLRQVSSRLRDFVMAFSNMTSNFSGVPLAFAFIILLGFNGALTI 129 Query: 129 LFKQWGWNVFDGFNLYSWSGLILVYVYFQIPXXXXXXYPAFYGIREQWREAAALLGAGAW 188 L KQ G V + FNLYS +GLI++Y YFQIP YPAF +RE WRE+A LLGA W Sbjct: 130 LLKQMG--VIEDFNLYSKTGLIVLYTYFQIPLGVLLLYPAFDALREDWRESAELLGANTW 187 Query: 189 QFWKTVGLPVLSPAIFGTLGILFXXXXXXXXXXXXLVGGNYNLLAVRIGSLVAGDVVTQP 248 QFW+ +GLPVL+PA+ GT IL L GN+N+L +RI S+V+GD+ P Sbjct: 188 QFWRHIGLPVLTPALLGTFVILLANALGAYATVYALTTGNFNILPIRIASMVSGDIFLDP 247 Query: 249 QMGXXXXXXXXXXXXXXXFLNQRMVRR 275 M ++Q ++RR Sbjct: 248 NMASALAMVLVGLMTLITIVHQWLLRR 274 >A3KWS3.1 A3KWS3_PSEAE Putative uncharacterized protein Length = 273 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 117/267 (43%), Positives = 163/267 (61%), Gaps = 4/267 (1%) Query: 9 ILALAPFVLMVLAFQVVPVFSMLTGSFRHADGAGFTLDNYRHALSSAYYQQAIKNSLLIS 68 +L L PF + FQ+ P+ + S + +D ++L NY S +Y+QAI++SL I+ Sbjct: 5 LLFLLPFAAFFVIFQIAPLAWVALNSLKASDA--WSLANYLELFGSPFYRQAIRHSLEIA 62 Query: 69 VFSSLIGLAVGLVCAYCITRFAPAVRDRLLMLSNMTSNFAGVPLAFAYIILLGNNGVFTL 128 +SSL+GL + ++ ++ + +RD ++ SNMTSNFAGVPLAFA+IILLG NG TL Sbjct: 63 GWSSLLGLLIAVLGSHSLRHVDSRLRDFVMAFSNMTSNFAGVPLAFAFIILLGFNGALTL 122 Query: 129 LFKQWGWNVFDGFNLYSWSGLILVYVYFQIPXXXXXXYPAFYGIREQWREAAALLGAGAW 188 L KQ GW D FNLYS +GLI++Y YFQIP YPAF +RE WRE+AALLGA W Sbjct: 123 LLKQAGW--IDDFNLYSKTGLIILYTYFQIPLGVMLLYPAFDALREDWRESAALLGANGW 180 Query: 189 QFWKTVGLPVLSPAIFGTLGILFXXXXXXXXXXXXLVGGNYNLLAVRIGSLVAGDVVTQP 248 Q+W+ +G+PVL+PA+ GT IL L GN+N++ +RIG+LVAGDV P Sbjct: 181 QYWRHIGIPVLTPALLGTFVILLANALGAYATVYSLTTGNFNVIPIRIGALVAGDVFPDP 240 Query: 249 QMGXXXXXXXXXXXXXXXFLNQRMVRR 275 M ++Q ++RR Sbjct: 241 NMASALAMVLVGLMTLITLVHQWLLRR 267 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.143 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,557,817,824 Number of extensions: 58657079 Number of successful extensions: 193761 Number of sequences better than 1.0e-05: 1623 Number of HSP's gapped: 195794 Number of HSP's successfully gapped: 1626 Length of query: 307 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 172 Effective length of database: 1,788,859,178 Effective search space: 307683778616 Effective search space used: 307683778616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)