BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0068.p (370 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZH57.1 C0ZH57_BREBN Putative uncharacterized protein 440 e-121 B1HR51.1 B1HR51_LYSSC Putative periplasmic solute-bindingprotein 437 e-121 A3IC93.1 A3IC93_9BACI Putative periplasmic solute-binding protein 436 e-120 A6CWI6.1 A6CWI6_9VIBR Putative periplasmic solute-binding protein 431 e-119 C4EUD6.1 C4EUD6_9BACT ABC-type Fe3+ transport system, periplasmi... 429 e-118 >C0ZH57.1 C0ZH57_BREBN Putative uncharacterized protein Length = 365 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/327 (63%), Positives = 255/327 (77%) Query: 43 ELSLSEIEAEATKEGAVVSVGMPDSWANWKDTWNDITAKYEITHTDTDMSSAEEIAKFEA 102 +L+L +I +A +EG V SVGMPD+WANW +TW+++ +Y + HTDTDMSSAEE+AKFEA Sbjct: 38 QLTLDQIVEKAKQEGEVNSVGMPDTWANWGETWSNLGKEYGLKHTDTDMSSAEELAKFEA 97 Query: 103 EKDKPTADIGDVGIAFGPVAVDKGVTQPYKTSYWDEIPDWAKDKDGNWIVGYQGSIAFLT 162 EK+ TADIGDVGIAFGP+A KG+T PYKTSYW++IPDWAKD +G+W++GY G++AF+T Sbjct: 98 EKEDATADIGDVGIAFGPLAKQKGLTLPYKTSYWNDIPDWAKDDEGHWLLGYTGTLAFIT 157 Query: 163 NTKLVANPPKSWEDLKNGSYKIIVGDVTKXXXXXXXXXXXXXXFGGDESNIEPGIAFFEE 222 + V NPPKSW DLKNGSYK+ +GDV K GGDE NI+PGI FF E Sbjct: 158 DKTKVQNPPKSWADLKNGSYKVAIGDVMKANQAQFAVLAAAYANGGDEKNIQPGIDFFAE 217 Query: 223 LAKKGRLSNAEASLANIEKGEVEVTLLWDFNALNYKDQIDKSGFDVAIPKEGSVVSGYAT 282 LAK RLS ++ SLAN+EKGEVEV +LWDFNAL Y+D+IDK+ FDV IP+E SV SGYAT Sbjct: 218 LAKNKRLSTSDPSLANLEKGEVEVAILWDFNALGYRDKIDKNRFDVLIPEEASVSSGYAT 277 Query: 283 VINKWAPHPNAAKLTREYILSDEGQINLAKGYARPIRDSVKLPEDVAAKLLPKEEYVNAK 342 VINK+A HP+AA L REYILSD GQ NLA+GYARPIR + KL E A LLP + Y NA+ Sbjct: 278 VINKYAKHPHAAMLAREYILSDAGQSNLARGYARPIRANAKLDESAKAMLLPDDMYKNAR 337 Query: 343 PVGDYKVWEETAKSLPQLWQERVLVHL 369 PVGD WEETAK LPQLWQE+VL+H+ Sbjct: 338 PVGDLTAWEETAKKLPQLWQEKVLIHV 364 >B1HR51.1 B1HR51_LYSSC Putative periplasmic solute-bindingprotein Length = 362 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 213/346 (61%), Positives = 263/346 (76%), Gaps = 6/346 (1%) Query: 23 AACTNSEAKADEGNSNAPAKELSLSEIEAEATKEGAVVSVGMPDSWANWKDTWNDITAKY 82 AAC++S + +N ++++L EI +A +EGAV SVGMPD+WANW +TW ++ +Y Sbjct: 21 AACSDSSS-----GTNEVKEDVTLEEITTKAKEEGAVNSVGMPDTWANWVETWEELGTEY 75 Query: 83 EITHTDTDMSSAEEIAKFEAEKDKPTADIGDVGIAFGPVAVDKGVTQPYKTSYWDEIPDW 142 I H DTDMSSAEE+AKFEAEKD TADIGDVGIAFGP+A DKG+T PYKTSYW+EIPDW Sbjct: 76 SIKHKDTDMSSAEELAKFEAEKDDATADIGDVGIAFGPIAKDKGLTLPYKTSYWEEIPDW 135 Query: 143 AKDKDGNWIVGYQGSIAFLTNTKLVANPPKSWEDLKNGSYKIIVGDVTKXXXXXXXXXXX 202 AKD +G+WIVGY G+I+FLT+ V + PKSWEDLKNG+Y + +GD Sbjct: 136 AKDNEGHWIVGYTGTISFLTDKNNVKDAPKSWEDLKNGNYTVSIGDALTANQAQFAILAA 195 Query: 203 XXXFGGDESNIEPGIAFFEELAKKGRLSNAEASLANIEKGEVEVTLLWDFNALNYKDQID 262 FGGDESNI+PGI FF ELAK+GRL + S+AN+EKGE++V +LWDFNAL Y+ QID Sbjct: 196 AMAFGGDESNIQPGIDFFAELAKQGRL-QGDPSVANLEKGEIDVAILWDFNALGYRHQID 254 Query: 263 KSGFDVAIPKEGSVVSGYATVINKWAPHPNAAKLTREYILSDEGQINLAKGYARPIRDSV 322 + FDV IPKEGSV SGYAT+INK+A +P+AA L REYILSD GQ NLAKGYARPIRD V Sbjct: 255 EERFDVVIPKEGSVTSGYATIINKYAKNPHAAMLAREYILSDAGQENLAKGYARPIRDKV 314 Query: 323 KLPEDVAAKLLPKEEYVNAKPVGDYKVWEETAKSLPQLWQERVLVH 368 LP+DV LLP + Y NA+PV D K WE+T K +PQL+QE+VL+H Sbjct: 315 DLPQDVKDLLLPADMYNNAQPVNDQKKWEDTTKQIPQLYQEQVLIH 360 >A3IC93.1 A3IC93_9BACI Putative periplasmic solute-binding protein Length = 362 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 213/346 (61%), Positives = 262/346 (75%), Gaps = 6/346 (1%) Query: 23 AACTNSEAKADEGNSNAPAKELSLSEIEAEATKEGAVVSVGMPDSWANWKDTWNDITAKY 82 AAC++S + A+E N ++++L EI +A +EG V SVGMPD+WANW +TW ++ +Y Sbjct: 21 AACSDSSSGANEVN-----EDVTLEEITTKAKEEGTVNSVGMPDTWANWVETWEELGTEY 75 Query: 83 EITHTDTDMSSAEEIAKFEAEKDKPTADIGDVGIAFGPVAVDKGVTQPYKTSYWDEIPDW 142 I H DTDMSSAEE+AKFEAEKD TADIGDVGIAFGP+A DKG+T PYKTSYWDEIP+W Sbjct: 76 SIKHKDTDMSSAEELAKFEAEKDDATADIGDVGIAFGPIAKDKGLTLPYKTSYWDEIPNW 135 Query: 143 AKDKDGNWIVGYQGSIAFLTNTKLVANPPKSWEDLKNGSYKIIVGDVTKXXXXXXXXXXX 202 AKD +G+WIVGY G+I+FLT+ V + PKSWEDLKNG Y + +GD Sbjct: 136 AKDDEGHWIVGYTGTISFLTDKNNVKDAPKSWEDLKNGDYTVSIGDALTANQAQFAILAA 195 Query: 203 XXXFGGDESNIEPGIAFFEELAKKGRLSNAEASLANIEKGEVEVTLLWDFNALNYKDQID 262 FGGDESNI+PGI FF ELAK+GRL + S+AN+EKGE++V +LWDFNAL Y+ QID Sbjct: 196 AMAFGGDESNIQPGIDFFAELAKQGRL-QGDPSVANLEKGEIDVAILWDFNALGYRHQID 254 Query: 263 KSGFDVAIPKEGSVVSGYATVINKWAPHPNAAKLTREYILSDEGQINLAKGYARPIRDSV 322 + F+V IP EGSV SGYAT+INK+A +P+AA L REYILSD GQ NLAKGYARPIRD V Sbjct: 255 EDRFEVVIPNEGSVTSGYATIINKYAKNPHAAMLAREYILSDAGQENLAKGYARPIRDKV 314 Query: 323 KLPEDVAAKLLPKEEYVNAKPVGDYKVWEETAKSLPQLWQERVLVH 368 LP+DV LLP + Y NA+PV D K WEET K +PQL+QE+VL+H Sbjct: 315 DLPQDVKDLLLPADMYNNAQPVNDQKQWEETTKQIPQLFQEQVLIH 360 >A6CWI6.1 A6CWI6_9VIBR Putative periplasmic solute-binding protein Length = 358 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/324 (62%), Positives = 247/324 (76%) Query: 45 SLSEIEAEATKEGAVVSVGMPDSWANWKDTWNDITAKYEITHTDTDMSSAEEIAKFEAEK 104 S++ + A +EGAV SVGMPDSWANWKDTWND+ + Y + H DTDMSSA+EIAKFEAEK Sbjct: 33 SVTALTEAAKQEGAVYSVGMPDSWANWKDTWNDLKSDYGLKHQDTDMSSAQEIAKFEAEK 92 Query: 105 DKPTADIGDVGIAFGPVAVDKGVTQPYKTSYWDEIPDWAKDKDGNWIVGYQGSIAFLTNT 164 TADIGDVG AF VAV KGVTQPYK + WDEIPDWAKDKDG+W + Y G+IAF++N Sbjct: 93 KNATADIGDVGFAFARVAVQKGVTQPYKPTTWDEIPDWAKDKDGHWALAYTGTIAFISNN 152 Query: 165 KLVANPPKSWEDLKNGSYKIIVGDVTKXXXXXXXXXXXXXXFGGDESNIEPGIAFFEELA 224 LV + PK+W+DL G YK+ VGDV GGDESN+ P I FF +LA Sbjct: 153 NLVKDAPKTWQDLLEGDYKVTVGDVGVAAQANNAVLAAAFANGGDESNLGPAIEFFSKLA 212 Query: 225 KKGRLSNAEASLANIEKGEVEVTLLWDFNALNYKDQIDKSGFDVAIPKEGSVVSGYATVI 284 K+GRLS + S+AN+EKGEVEV +LWDFNALNY+DQID+S F V IP++GSV+SGY T+I Sbjct: 213 KQGRLSFTDPSIANLEKGEVEVAILWDFNALNYRDQIDRSRFSVNIPQDGSVISGYTTII 272 Query: 285 NKWAPHPNAAKLTREYILSDEGQINLAKGYARPIRDSVKLPEDVAAKLLPKEEYVNAKPV 344 NK+A +PNAAKL RE+I SD GQINLA+GYARPIR +VKLPE V AKL+ ++Y N PV Sbjct: 273 NKYAKNPNAAKLAREHIFSDRGQINLAEGYARPIRSNVKLPESVQAKLIANDQYGNVHPV 332 Query: 345 GDYKVWEETAKSLPQLWQERVLVH 368 D+K WE++A+ LP+ WQE VL+H Sbjct: 333 TDFKAWEKSARRLPRQWQENVLIH 356 >C4EUD6.1 C4EUD6_9BACT ABC-type Fe3+ transport system, periplasmic component Length = 359 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 199/336 (59%), Positives = 246/336 (73%), Gaps = 1/336 (0%) Query: 35 GNSNAPAKELSLSEIEAEATKEGAVVSVGMPDSWANWKDTWNDITAKYEITHTDTDMSSA 94 G AKE+ E+ A A +EG + +VGMPD WANWKDTW D+ A Y I H DTDMSSA Sbjct: 24 GAGCGMAKEMP-KELVAAAKREGKLFTVGMPDDWANWKDTWRDLKAIYGIEHQDTDMSSA 82 Query: 95 EEIAKFEAEKDKPTADIGDVGIAFGPVAVDKGVTQPYKTSYWDEIPDWAKDKDGNWIVGY 154 +EIAKF AE TAD+GDVGIAFGP+AV KGVTQPYKTSYWDEIP WAKD+DG+WIVGY Sbjct: 83 QEIAKFAAEGKNATADMGDVGIAFGPLAVKKGVTQPYKTSYWDEIPSWAKDRDGHWIVGY 142 Query: 155 QGSIAFLTNTKLVANPPKSWEDLKNGSYKIIVGDVTKXXXXXXXXXXXXXXFGGDESNIE 214 G+IAFL N LV PP+SW DL G YK+ +GDV GG E N++ Sbjct: 143 TGTIAFLVNKDLVKTPPRSWRDLLKGDYKVTIGDVGVAAQANSAVLACAYALGGHEGNLK 202 Query: 215 PGIAFFEELAKKGRLSNAEASLANIEKGEVEVTLLWDFNALNYKDQIDKSGFDVAIPKEG 274 P + FF +LAK GRLS + S++ I+KGEV V +LWDFNALNY D++ + F++ IP +G Sbjct: 203 PAVDFFAQLAKAGRLSTNDPSISMIQKGEVAVGILWDFNALNYADKVGRDRFEILIPSDG 262 Query: 275 SVVSGYATVINKWAPHPNAAKLTREYILSDEGQINLAKGYARPIRDSVKLPEDVAAKLLP 334 S++SGYAT+IN+WA +PNAAKL REYILSD GQINLA+GYARP+R SVKLPEDV KLLP Sbjct: 263 SLISGYATIINRWAKNPNAAKLAREYILSDRGQINLARGYARPVRTSVKLPEDVKRKLLP 322 Query: 335 KEEYVNAKPVGDYKVWEETAKSLPQLWQERVLVHLN 370 + +Y A+P+ D+ WE T + L ++WQE VL+H+N Sbjct: 323 QSQYAKARPIKDFAAWERTTQELQRVWQENVLIHVN 358 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.130 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,182,773,103 Number of extensions: 90383120 Number of successful extensions: 177370 Number of sequences better than 1.0e-05: 381 Number of HSP's gapped: 176699 Number of HSP's successfully gapped: 383 Length of query: 370 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 233 Effective length of database: 1,770,017,148 Effective search space: 412413995484 Effective search space used: 412413995484 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 132 (55.5 bits)