BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0564.0066.p
         (145 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A5GAR3.1 A5GAR3_GEOUR Transcriptional regulator, MarR family           98   3e-19
A4J418.1 A4J418_DESRM Transcriptional regulator, MarR family           97   4e-19
C2FY59.1 C2FY59_9SPHI MarR family transcriptional regulator            91   3e-17
C4D2M1.1 C4D2M1_9SPHI Transcriptional regulator                        91   4e-17
A9U7Q6.1 A9U7Q6_PHYPA Predicted protein                                91   4e-17

>A5GAR3.1 A5GAR3_GEOUR Transcriptional regulator, MarR family
          Length = 148

 Score = 97.8 bits (242), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/140 (41%), Positives = 77/140 (55%), Gaps = 2/140 (1%)

Query: 4   EFDYTELIGFQIIKGEVLIKRRMLAIFMEKGYDLTFEQWTVLNVLYAEPGVIQSEIAAKT 63
           EF     +G+ I K  + +K  +   F  K YD+T EQW VLN L+ + G+ Q E+A + 
Sbjct: 2   EFKLDAPLGYVINKTALALKNELGRRF--KPYDITVEQWRVLNRLWEKDGLTQKELAEQI 59

Query: 64  FKDKTNVTRILDVLAKKGYVAREAHGKDRRSFQIYLTAAGQEIFADLIPHVQQLNEQFKR 123
           FKD+ N TRILD L  KG + REA   DRR+F I LT  G+ + A L+P   Q+ E    
Sbjct: 60  FKDQPNTTRILDKLQNKGIIRREASPDDRRAFIINLTGEGRMLRAQLLPVACQMGEDVFT 119

Query: 124 DIPDEELAQFIHTLEKICRN 143
            I +EE       L KIC N
Sbjct: 120 GISEEEQLLLKVLLNKICAN 139


>A4J418.1 A4J418_DESRM Transcriptional regulator, MarR family
          Length = 168

 Score = 97.4 bits (241), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 84/141 (59%)

Query: 3   DEFDYTELIGFQIIKGEVLIKRRMLAIFMEKGYDLTFEQWTVLNVLYAEPGVIQSEIAAK 62
           D F   +  GF I +  ++I+RR+  +  E GYD+T E++++L+ L+ E G+ Q+ +  K
Sbjct: 23  DTFKIEDTFGFIINRSAIVIRRRLAKMLKEAGYDITPEEFSLLSRLWEEDGIQQTILTEK 82

Query: 63  TFKDKTNVTRILDVLAKKGYVAREAHGKDRRSFQIYLTAAGQEIFADLIPHVQQLNEQFK 122
           T KDKT VTR+L+ L KK YV+++    DRR++ IYLT  G  I AD++   +++ E   
Sbjct: 83  TLKDKTRVTRLLNSLIKKFYVSKKTDEADRRNYIIYLTEEGYAIKADIVKIFKKIMENAS 142

Query: 123 RDIPDEELAQFIHTLEKICRN 143
            DI   E+      L KI +N
Sbjct: 143 EDIDQGEINVTKKVLRKISQN 163


>C2FY59.1 C2FY59_9SPHI MarR family transcriptional regulator
          Length = 150

 Score = 91.3 bits (225), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 67/122 (54%)

Query: 22  IKRRMLAIFMEKGYDLTFEQWTVLNVLYAEPGVIQSEIAAKTFKDKTNVTRILDVLAKKG 81
           +K+   + F E G+D+T +QWT++  L+  P ++Q E+A K  KD+  +TRI+D+L KKG
Sbjct: 20  VKQYAQSSFTEMGFDITVDQWTIIKTLFEHPDLLQKELAEKCGKDQPTLTRIVDLLIKKG 79

Query: 82  YVAREAHGKDRRSFQIYLTAAGQEIFADLIPHVQQLNEQFKRDIPDEELAQFIHTLEKIC 141
              R  H  DRRS  + LT  G      L PH+ Q+  +   ++ DE+   F   L  I 
Sbjct: 80  LAERHNHPTDRRSLYLKLTDLGLNKVQSLTPHITQIRTKAWDNLTDEDFKHFTRILNTIH 139

Query: 142 RN 143
            N
Sbjct: 140 DN 141


>C4D2M1.1 C4D2M1_9SPHI Transcriptional regulator
          Length = 145

 Score = 90.9 bits (224), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 68/114 (59%)

Query: 30  FMEKGYDLTFEQWTVLNVLYAEPGVIQSEIAAKTFKDKTNVTRILDVLAKKGYVAREAHG 89
           F + G++LT +QW V++ L+  PG+ Q+ I+  T KD   VTRI+D+L++KG   R    
Sbjct: 29  FTDAGFELTVDQWVVIDHLFRNPGISQNTISEMTTKDAPTVTRIIDLLSQKGLTERRMAD 88

Query: 90  KDRRSFQIYLTAAGQEIFADLIPHVQQLNEQFKRDIPDEELAQFIHTLEKICRN 143
            DRR F +YLT AG+  + +++P V  +  +   D+ DE+   F+  ++ I  N
Sbjct: 89  TDRRKFLVYLTEAGEAKYHEVLPVVSAMRRKGWGDLSDEDYQHFVRIMDSIYSN 142


>A9U7Q6.1 A9U7Q6_PHYPA Predicted protein
          Length = 131

 Score = 90.9 bits (224), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 77/124 (62%), Gaps = 2/124 (1%)

Query: 22  IKRRMLAIF--MEKGYDLTFEQWTVLNVLYAEPGVIQSEIAAKTFKDKTNVTRILDVLAK 79
           + RRM +IF  + K Y +T EQW+VL  ++ + G+ Q E+A ++ KD+ ++TRILDVL K
Sbjct: 1   MSRRMSSIFAGLLKPYGITPEQWSVLYQVHLQEGINQKELALRSGKDQPSITRILDVLDK 60

Query: 80  KGYVAREAHGKDRRSFQIYLTAAGQEIFADLIPHVQQLNEQFKRDIPDEELAQFIHTLEK 139
           K  + R+    DRR++ IY T A QE+  + IP   +LN++    I DE+L      +++
Sbjct: 61  KELIQRKPDPADRRAYLIYATPAVQELMKETIPMELKLNDELIAGITDEQLESLNRIMDQ 120

Query: 140 ICRN 143
           I +N
Sbjct: 121 INKN 124


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.139    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 802,594,985
Number of extensions: 29114720
Number of successful extensions: 106872
Number of sequences better than 1.0e-05: 575
Number of HSP's gapped: 107451
Number of HSP's successfully gapped: 575
Length of query: 145
Length of database: 3,060,696,203
Length adjustment: 108
Effective length of query: 37
Effective length of database: 2,043,226,583
Effective search space: 75599383571
Effective search space used: 75599383571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)