BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0065.p (258 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D609.1 B1D609_9BACL Binding-protein-dependent transport system... 408 e-112 B3KD11.1 B3KD11_9BACI Binding-protein-dependent transport system... 392 e-107 B9J4C6.1 B9J4C6_BACCQ Alkanesulfonates transport system permease... 316 1e-84 B7HVN7.1 B7HVN7_BACC7 Taurine ABC transporter, permease protein 316 1e-84 C2S567.1 C2S567_BACCE ABC transporter, permease protein 316 1e-84 >B1D609.1 B1D609_9BACL Binding-protein-dependent transport systems inner membrane component Length = 259 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 193/258 (74%), Positives = 227/258 (87%) Query: 1 MKWVEKKWVSVSLLWLAAFCIWQLGALLYGPDVIPGPWATLKGGRELIEDGTLMQYIGIS 60 MK + +KWV++ LLW+ F +WQ+GA +YGP++IPGP AT +G +EL+ DG+LM+YIGIS Sbjct: 1 MKLLNRKWVTIPLLWVITFIVWQIGAWIYGPEIIPGPAATWQGAQELLSDGSLMKYIGIS 60 Query: 61 FYRVLVGWVLGSLLAVPAGLIIGKVNVIRIFAEPFLNFIRFIPPIAFITLFLVWFGIGEQ 120 FYRV GW LGSLLA+P GL IGKV IR+FAEPFLNF+RFIPPIAFITLFLVWFGIGEQ Sbjct: 61 FYRVFAGWALGSLLAIPIGLTIGKVTAIRVFAEPFLNFVRFIPPIAFITLFLVWFGIGEQ 120 Query: 121 SKIALIMYATFFIVILNTLTGVMSVEEDKIRSARSMGANEWQILLHVIVPATVPYIFTGV 180 SKIALIMYAT FIVI+NTLTGV+++EED+IRSARSMGA+EWQILLHV++PAT PYIFTG+ Sbjct: 121 SKIALIMYATLFIVIINTLTGVLAIEEDRIRSARSMGASEWQILLHVVIPATTPYIFTGI 180 Query: 181 RLAMGTSYMAIIGAEMIASNEGVGYLIWNSRLFFRTDWIFVGLFCLGFMGFATDRLFGWF 240 RLAMGTSYMAIIGAEMIA+NEGVG+LIWNSRL+FRTDWIFVGL LG MGF TDR+ GW Sbjct: 181 RLAMGTSYMAIIGAEMIAANEGVGFLIWNSRLYFRTDWIFVGLISLGLMGFLTDRIVGWL 240 Query: 241 GRKALYRYGVVSVAARRR 258 G K L+RYGV++ A RR Sbjct: 241 GSKLLFRYGVINTTALRR 258 >B3KD11.1 B3KD11_9BACI Binding-protein-dependent transport systems inner membrane component Length = 258 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/253 (75%), Positives = 217/253 (85%) Query: 6 KKWVSVSLLWLAAFCIWQLGALLYGPDVIPGPWATLKGGRELIEDGTLMQYIGISFYRVL 65 KKW LLW+ +W L +L YGP+++PGP T KGG EL+ DGTL+QYIGIS YRVL Sbjct: 6 KKWSLHILLWMVGLGVWHLLSLAYGPEILPGPVYTAKGGYELLTDGTLIQYIGISSYRVL 65 Query: 66 VGWVLGSLLAVPAGLIIGKVNVIRIFAEPFLNFIRFIPPIAFITLFLVWFGIGEQSKIAL 125 +GW GSLLA+P G++IGKV IR+FAEPFLNFIRFIPPIAFITLFLVWFGIGE SKI L Sbjct: 66 LGWTFGSLLAIPVGIMIGKVGPIRVFAEPFLNFIRFIPPIAFITLFLVWFGIGETSKIML 125 Query: 126 IMYATFFIVILNTLTGVMSVEEDKIRSARSMGANEWQILLHVIVPATVPYIFTGVRLAMG 185 I+YATFFIV+LNTLTGV+SVEEDKIRSARSMGA+EWQI+LHV++PATVP++FTG+RLAMG Sbjct: 126 ILYATFFIVVLNTLTGVLSVEEDKIRSARSMGASEWQIVLHVVIPATVPFMFTGIRLAMG 185 Query: 186 TSYMAIIGAEMIASNEGVGYLIWNSRLFFRTDWIFVGLFCLGFMGFATDRLFGWFGRKAL 245 TS+MAIIGAEMIASNEGVGYLIWNSRLFFRTDWIFVGL CLG MGF TDR G GRK L Sbjct: 186 TSFMAIIGAEMIASNEGVGYLIWNSRLFFRTDWIFVGLICLGLMGFLTDRAVGLLGRKLL 245 Query: 246 YRYGVVSVAARRR 258 RYGVVS + RR Sbjct: 246 SRYGVVSANSLRR 258 >B9J4C6.1 B9J4C6_BACCQ Alkanesulfonates transport system permease; sulfonate ABC transporter, permease Length = 274 Score = 316 bits (810), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 150/250 (60%), Positives = 196/250 (78%), Gaps = 1/250 (0%) Query: 4 VEKKWVSVSLL-WLAAFCIWQLGALLYGPDVIPGPWATLKGGRELIEDGTLMQYIGISFY 62 ++KK + ++ W+ IW + A P +P P A L G EL ++G+L YIG+SF Sbjct: 24 LQKKLLQSGIIAWILILTIWSVVANFSDPQFLPSPIAVLYGAIELSQNGSLFIYIGVSFL 83 Query: 63 RVLVGWVLGSLLAVPAGLIIGKVNVIRIFAEPFLNFIRFIPPIAFITLFLVWFGIGEQSK 122 RV+ GW+LG+L+A+P GL+IG++ +R +P +NFIRFIPP+AFITLF++WFGIGEQSK Sbjct: 84 RVIAGWILGNLVAIPVGLLIGRIPWLRALFDPVINFIRFIPPLAFITLFMLWFGIGEQSK 143 Query: 123 IALIMYATFFIVILNTLTGVMSVEEDKIRSARSMGANEWQILLHVIVPATVPYIFTGVRL 182 I LIMYATFFIV +NT+TGV +VEEDKIRSARSMGA+EWQI+ HVI+PA +PYI+TG +L Sbjct: 144 IFLIMYATFFIVTINTITGVQAVEEDKIRSARSMGASEWQIMFHVIIPAALPYIYTGAKL 203 Query: 183 AMGTSYMAIIGAEMIASNEGVGYLIWNSRLFFRTDWIFVGLFCLGFMGFATDRLFGWFGR 242 AMG+S+MAI+GAEM+A+NEG+GY+IWN+RL+F+TDWIFVGL LG MGF DR+F FG Sbjct: 204 AMGSSFMAIVGAEMVAANEGIGYMIWNARLYFKTDWIFVGLVILGLMGFLMDRIFNKFGS 263 Query: 243 KALYRYGVVS 252 L RY VV Sbjct: 264 VVLKRYNVVK 273 >B7HVN7.1 B7HVN7_BACC7 Taurine ABC transporter, permease protein Length = 274 Score = 316 bits (810), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 150/250 (60%), Positives = 196/250 (78%), Gaps = 1/250 (0%) Query: 4 VEKKWVSVSLL-WLAAFCIWQLGALLYGPDVIPGPWATLKGGRELIEDGTLMQYIGISFY 62 ++KK + ++ W+ IW + A P +P P A L G EL ++G+L YIG+SF Sbjct: 24 LQKKLLQSGIIAWILILTIWSVVANFSDPQFLPSPIAVLYGAIELSQNGSLFIYIGVSFL 83 Query: 63 RVLVGWVLGSLLAVPAGLIIGKVNVIRIFAEPFLNFIRFIPPIAFITLFLVWFGIGEQSK 122 RV+ GW+LG+L+A+P GL+IG++ +R +P +NFIRFIPP+AFITLF++WFGIGEQSK Sbjct: 84 RVIAGWILGNLVAIPVGLLIGRIPWLRALFDPVINFIRFIPPLAFITLFMLWFGIGEQSK 143 Query: 123 IALIMYATFFIVILNTLTGVMSVEEDKIRSARSMGANEWQILLHVIVPATVPYIFTGVRL 182 I LIMYATFFIV +NT+TGV +VEEDKIRSARSMGA+EWQI+ HVI+PA +PYI+TG +L Sbjct: 144 IFLIMYATFFIVTINTITGVQAVEEDKIRSARSMGASEWQIMFHVIIPAALPYIYTGAKL 203 Query: 183 AMGTSYMAIIGAEMIASNEGVGYLIWNSRLFFRTDWIFVGLFCLGFMGFATDRLFGWFGR 242 AMG+S+MAI+GAEM+A+NEG+GY+IWN+RL+F+TDWIFVGL LG MGF DR+F FG Sbjct: 204 AMGSSFMAIVGAEMVAANEGIGYMIWNARLYFKTDWIFVGLVILGLMGFLMDRIFNKFGS 263 Query: 243 KALYRYGVVS 252 L RY VV Sbjct: 264 VVLKRYNVVK 273 >C2S567.1 C2S567_BACCE ABC transporter, permease protein Length = 274 Score = 316 bits (810), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 150/250 (60%), Positives = 196/250 (78%), Gaps = 1/250 (0%) Query: 4 VEKKWVSVSLL-WLAAFCIWQLGALLYGPDVIPGPWATLKGGRELIEDGTLMQYIGISFY 62 ++KK + ++ W+ IW + A P +P P A L G EL ++G+L YIG+SF Sbjct: 24 LQKKLLQSGIIAWILILTIWSVVANFSDPQFLPSPIAVLYGAIELSQNGSLFIYIGVSFL 83 Query: 63 RVLVGWVLGSLLAVPAGLIIGKVNVIRIFAEPFLNFIRFIPPIAFITLFLVWFGIGEQSK 122 RV+ GW+LG+L+A+P GL+IG++ +R +P +NFIRFIPP+AFITLF++WFGIGEQSK Sbjct: 84 RVIAGWILGNLVAIPVGLLIGRIPWLRALFDPVINFIRFIPPLAFITLFMLWFGIGEQSK 143 Query: 123 IALIMYATFFIVILNTLTGVMSVEEDKIRSARSMGANEWQILLHVIVPATVPYIFTGVRL 182 I LIMYATFFIV +NT+TGV +VEEDKIRSARSMGA+EWQI+ HVI+PA +PYI+TG +L Sbjct: 144 IFLIMYATFFIVTINTITGVQAVEEDKIRSARSMGASEWQIMFHVIIPAALPYIYTGAKL 203 Query: 183 AMGTSYMAIIGAEMIASNEGVGYLIWNSRLFFRTDWIFVGLFCLGFMGFATDRLFGWFGR 242 AMG+S+MAI+GAEM+A+NEG+GY+IWN+RL+F+TDWIFVGL LG MGF DR+F FG Sbjct: 204 AMGSSFMAIVGAEMVAANEGIGYMIWNARLYFKTDWIFVGLVILGLMGFLMDRIFNKFGS 263 Query: 243 KALYRYGVVS 252 L RY VV Sbjct: 264 VVLKRYNVVK 273 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.146 0.477 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,603,333,837 Number of extensions: 66305301 Number of successful extensions: 239515 Number of sequences better than 1.0e-05: 4746 Number of HSP's gapped: 239868 Number of HSP's successfully gapped: 4770 Length of query: 258 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 125 Effective length of database: 1,807,701,208 Effective search space: 225962651000 Effective search space used: 225962651000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)