BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0064.p (258 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KD10.1 B3KD10_9BACI ABC transporter related 406 e-111 B1D608.1 B1D608_9BACL ABC transporter related 405 e-111 B9J4C7.1 B9J4C7_BACCQ ABC transporter, ATP-binding protein; poss... 345 3e-93 B7HVN8.1 B7HVN8_BACC7 Taurine import ATP-binding protein TauB EC... 345 3e-93 C2S568.1 C2S568_BACCE ABC transporter 345 3e-93 >B3KD10.1 B3KD10_9BACI ABC transporter related Length = 260 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/260 (74%), Positives = 226/260 (86%), Gaps = 2/260 (0%) Query: 1 MSLPARQNAIHIEQLRKSYSESAA--GDVHYIIKDVNLVIKGGEFFVLLGPSGCGKSTLL 58 M +RQN IHIEQL KSY++++A G +HYII+DVNL +KGGEFFVLLGPSGCGKSTLL Sbjct: 1 MRAASRQNEIHIEQLNKSYTQASASAGGLHYIIQDVNLAVKGGEFFVLLGPSGCGKSTLL 60 Query: 59 NMIAGFVSKSGGNLRVDNVEVDKPGRDRAVVFQQADSSLFPWLTVRENVEFGLRMKKTPK 118 ++IAGFVSK+ G +RV EV++PG+DRAVVFQQADSSLFPWLTVRENVEFGLRMK+ P Sbjct: 61 SLIAGFVSKTSGQVRVGEKEVERPGQDRAVVFQQADSSLFPWLTVRENVEFGLRMKRMPA 120 Query: 119 AERRAISDRYIGLVGLDGHEDKFPKELSGGMKQRVQLARVLANDPAILLMDEPFGALDAM 178 +RR IS +I LVGL GHE K+P+ELSGGMKQRVQLARVL+NDP+ILLMDEPFGALDAM Sbjct: 121 EKRREISGEFIELVGLAGHESKYPRELSGGMKQRVQLARVLSNDPSILLMDEPFGALDAM 180 Query: 179 TRRTMQKELVHIWRETHKTVIFVTHDIQEALLLGERIGIMSVGPSSNITNIYDNVLPFPR 238 TRRTMQ+ELV IW++T KTVIFVTHDIQEALLLG RIGIMS GPSS IT+IY+ L +PR Sbjct: 181 TRRTMQRELVRIWQDTDKTVIFVTHDIQEALLLGGRIGIMSAGPSSRITDIYEVPLAYPR 240 Query: 239 DVASPELYALYNQIQSHFEE 258 D++ P +AL+NQIQSHF+E Sbjct: 241 DLSDPAFHALHNQIQSHFDE 260 >B1D608.1 B1D608_9BACL ABC transporter related Length = 270 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 198/253 (78%), Positives = 220/253 (86%), Gaps = 3/253 (1%) Query: 8 NAIHIEQLRKSYSE---SAAGDVHYIIKDVNLVIKGGEFFVLLGPSGCGKSTLLNMIAGF 64 N I IE+L KSYS+ AG VHYIIKD++LV+KGGEFFVLLGPSGCGKSTLLNMIAGF Sbjct: 9 NTITIERLNKSYSDVRPGTAGSVHYIIKDIDLVVKGGEFFVLLGPSGCGKSTLLNMIAGF 68 Query: 65 VSKSGGNLRVDNVEVDKPGRDRAVVFQQADSSLFPWLTVRENVEFGLRMKKTPKAERRAI 124 VSK+GG+LRV N EVDKPG++RAVVFQQADSSLFPWLTVR+NVEFGL+MKK PK ER+ I Sbjct: 69 VSKTGGSLRVGNDEVDKPGKERAVVFQQADSSLFPWLTVRQNVEFGLKMKKMPKDERKEI 128 Query: 125 SDRYIGLVGLDGHEDKFPKELSGGMKQRVQLARVLANDPAILLMDEPFGALDAMTRRTMQ 184 SDRYI LVGL GHE+KFP+ELSGGMKQRVQLARVLANDPAILLMDEPFGALDAMTRR MQ Sbjct: 129 SDRYIRLVGLYGHENKFPRELSGGMKQRVQLARVLANDPAILLMDEPFGALDAMTRRIMQ 188 Query: 185 KELVHIWRETHKTVIFVTHDIQEALLLGERIGIMSVGPSSNITNIYDNVLPFPRDVASPE 244 KEL IWRET KTVIFVTHDIQEALLLG+RI +MS GP++ I++IY L +PRD ASPE Sbjct: 189 KELSQIWRETGKTVIFVTHDIQEALLLGQRIAVMSTGPNAKISSIYQVPLGYPRDPASPE 248 Query: 245 LYALYNQIQSHFE 257 L L IQSHF+ Sbjct: 249 LNELQRHIQSHFD 261 >B9J4C7.1 B9J4C7_BACCQ ABC transporter, ATP-binding protein; possible sulfonate/taurine transporter Length = 259 Score = 345 bits (884), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 166/249 (66%), Positives = 194/249 (77%), Gaps = 5/249 (2%) Query: 9 AIHIEQLRKSYSESAAGDVHYIIKDVNLVIKGGEFFVLLGPSGCGKSTLLNMIAGFVSKS 68 AI I L KS++ ++++DVNL I GEFF+LLGPSGCGKSTLL+M+AGFV K+ Sbjct: 16 AISISGLSKSFNNE-----QFVLEDVNLTIGNGEFFILLGPSGCGKSTLLSMLAGFVEKT 70 Query: 69 GGNLRVDNVEVDKPGRDRAVVFQQADSSLFPWLTVRENVEFGLRMKKTPKAERRAISDRY 128 G L V+N EV KP R+R VVFQQAD++LFPWLT++EN+EFGL+MKK K R IS Y Sbjct: 71 SGKLIVNNEEVIKPDRNRGVVFQQADAALFPWLTIKENIEFGLKMKKMIKQTRNDISSHY 130 Query: 129 IGLVGLDGHEDKFPKELSGGMKQRVQLARVLANDPAILLMDEPFGALDAMTRRTMQKELV 188 I LVGLDGHE K+P+ELSGGMKQRVQLARVLAND LLMDEPFGALDAMTRRTMQ EL+ Sbjct: 131 IKLVGLDGHEGKYPRELSGGMKQRVQLARVLANDSQFLLMDEPFGALDAMTRRTMQIELI 190 Query: 189 HIWRETHKTVIFVTHDIQEALLLGERIGIMSVGPSSNITNIYDNVLPFPRDVASPELYAL 248 IW+ET+KT+IFVTHDIQEALLLG+RIG+MS GPSS I IYD LP+PR E Sbjct: 191 RIWKETNKTIIFVTHDIQEALLLGQRIGVMSKGPSSKIEKIYDIPLPYPRTFTDKEFNYY 250 Query: 249 YNQIQSHFE 257 Y IQSHF+ Sbjct: 251 YQMIQSHFD 259 >B7HVN8.1 B7HVN8_BACC7 Taurine import ATP-binding protein TauB EC=3.6.3.36 Length = 259 Score = 345 bits (884), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 166/249 (66%), Positives = 194/249 (77%), Gaps = 5/249 (2%) Query: 9 AIHIEQLRKSYSESAAGDVHYIIKDVNLVIKGGEFFVLLGPSGCGKSTLLNMIAGFVSKS 68 AI I L KS++ ++++DVNL I GEFF+LLGPSGCGKSTLL+M+AGFV K+ Sbjct: 16 AISISGLSKSFNNE-----QFVLEDVNLTIGNGEFFILLGPSGCGKSTLLSMLAGFVEKT 70 Query: 69 GGNLRVDNVEVDKPGRDRAVVFQQADSSLFPWLTVRENVEFGLRMKKTPKAERRAISDRY 128 G L V+N EV KP R+R VVFQQAD++LFPWLT++EN+EFGL+MKK K R IS Y Sbjct: 71 SGKLIVNNEEVIKPDRNRGVVFQQADAALFPWLTIKENIEFGLKMKKMIKQTRNDISSHY 130 Query: 129 IGLVGLDGHEDKFPKELSGGMKQRVQLARVLANDPAILLMDEPFGALDAMTRRTMQKELV 188 I LVGLDGHE K+P+ELSGGMKQRVQLARVLAND LLMDEPFGALDAMTRRTMQ EL+ Sbjct: 131 IKLVGLDGHEGKYPRELSGGMKQRVQLARVLANDSQFLLMDEPFGALDAMTRRTMQIELI 190 Query: 189 HIWRETHKTVIFVTHDIQEALLLGERIGIMSVGPSSNITNIYDNVLPFPRDVASPELYAL 248 IW+ET+KT+IFVTHDIQEALLLG+RIG+MS GPSS I IYD LP+PR E Sbjct: 191 RIWKETNKTIIFVTHDIQEALLLGQRIGVMSKGPSSKIEKIYDIPLPYPRTFTDKEFNYY 250 Query: 249 YNQIQSHFE 257 Y IQSHF+ Sbjct: 251 YQMIQSHFD 259 >C2S568.1 C2S568_BACCE ABC transporter Length = 259 Score = 345 bits (884), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 166/249 (66%), Positives = 194/249 (77%), Gaps = 5/249 (2%) Query: 9 AIHIEQLRKSYSESAAGDVHYIIKDVNLVIKGGEFFVLLGPSGCGKSTLLNMIAGFVSKS 68 AI I L KS++ ++++DVNL I GEFF+LLGPSGCGKSTLL+M+AGFV K+ Sbjct: 16 AISISGLSKSFNNE-----QFVLEDVNLTIGNGEFFILLGPSGCGKSTLLSMLAGFVEKT 70 Query: 69 GGNLRVDNVEVDKPGRDRAVVFQQADSSLFPWLTVRENVEFGLRMKKTPKAERRAISDRY 128 G L V+N EV KP R+R VVFQQAD++LFPWLT++EN+EFGL+MKK K R IS Y Sbjct: 71 SGKLIVNNEEVIKPDRNRGVVFQQADAALFPWLTIKENIEFGLKMKKMIKQTRNDISSHY 130 Query: 129 IGLVGLDGHEDKFPKELSGGMKQRVQLARVLANDPAILLMDEPFGALDAMTRRTMQKELV 188 I LVGLDGHE K+P+ELSGGMKQRVQLARVLAND LLMDEPFGALDAMTRRTMQ EL+ Sbjct: 131 IKLVGLDGHEGKYPRELSGGMKQRVQLARVLANDSQFLLMDEPFGALDAMTRRTMQIELI 190 Query: 189 HIWRETHKTVIFVTHDIQEALLLGERIGIMSVGPSSNITNIYDNVLPFPRDVASPELYAL 248 IW+ET+KT+IFVTHDIQEALLLG+RIG+MS GPSS I IYD LP+PR E Sbjct: 191 RIWKETNKTIIFVTHDIQEALLLGQRIGVMSKGPSSKIEKIYDIPLPYPRTFTDKEFNYY 250 Query: 249 YNQIQSHFE 257 Y IQSHF+ Sbjct: 251 YQMIQSHFD 259 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,521,851,587 Number of extensions: 60966645 Number of successful extensions: 489744 Number of sequences better than 1.0e-05: 93075 Number of HSP's gapped: 382834 Number of HSP's successfully gapped: 99312 Length of query: 258 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 125 Effective length of database: 1,807,701,208 Effective search space: 225962651000 Effective search space used: 225962651000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)