BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0063.p (342 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KD09.1 B3KD09_9BACI NMT1/THI5 like domain protein 393 e-107 B1D607.1 B1D607_9BACL ABC transporter, periplasmic substrate-bin... 358 5e-97 Q639T0.1 Q639T0_BACCZ ABC transporter, periplasmic substrate-bin... 179 4e-43 B9J4C8.1 B9J4C8_BACCQ Lipoprotein, putative 178 7e-43 B7HVN9.1 B7HVN9_BACC7 Lipoprotein, putative 178 7e-43 >B3KD09.1 B3KD09_9BACI NMT1/THI5 like domain protein Length = 336 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 187/295 (63%), Positives = 227/295 (76%) Query: 44 LKIKIADINTNPTFRVALDKGIFAKHGIDAEIINFGTPAEGVNALFIKQVDVAFGADFPV 103 ++KIADI+TN FR+A KGIF KHGIDAE++NF TPAEGVN+LFIKQVDVAFGADFP+ Sbjct: 38 FQLKIADISTNAVFRIAKSKGIFDKHGIDAELVNFATPAEGVNSLFIKQVDVAFGADFPL 97 Query: 104 LNAVAKGEYSIIXXXXXXXXXXXXVWKLYVKDEIKSAADLKGKNLSFMRGTFLPYLWDEY 163 LNAV+KG+YSI WKL+V+ EI SAADLKGK LSF RGTF+PYLWD Y Sbjct: 98 LNAVSKGDYSIFASTGTATDLSASEWKLFVRKEIASAADLKGKKLSFSRGTFIPYLWDVY 157 Query: 164 LKEQGIALSDVTLTGQGAFDEAFIALKQGDVDAAWFSGSALTGKLAALEGVHELTDMSQT 223 L + G+ALSDV L GQG FDEA++ALK+G++DAAW G+ L K AL EL+DMS+T Sbjct: 158 LADNGVALSDVELIGQGGFDEAYVALKKGEIDAAWVYGAVLNEKFGALAEARELSDMSKT 217 Query: 224 PVRLGMGLVAGNAFVQANPDGIGQFLAAVDEASAYAQEHPGEVADLMFKEVKQPKEATLK 283 PVRLG GL+A N + +N +G FL A+DEASAYAQ HP E AD+M++EVKQPKEATLK Sbjct: 218 PVRLGTGLIASNELINSNKEGFVAFLKALDEASAYAQAHPEETADMMYEEVKQPKEATLK 277 Query: 284 DLPVNPWKVGFTQAAYDSLAGQKKYMVDTGIIEQDFDLDSKLDLEPLRKALPDKV 338 DLP NPW +GFT AY L GQK+YMV GIIE+DF+L+ KL+L+ +R A PD+V Sbjct: 278 DLPKNPWSIGFTDKAYAGLRGQKEYMVANGIIEKDFELNDKLNLDLVRTAFPDRV 332 >B1D607.1 B1D607_9BACL ABC transporter, periplasmic substrate-binding protein; possible sulfonate/taurine transporter Length = 345 Score = 358 bits (918), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 169/299 (56%), Positives = 217/299 (72%) Query: 44 LKIKIADINTNPTFRVALDKGIFAKHGIDAEIINFGTPAEGVNALFIKQVDVAFGADFPV 103 +KIKIAD +TNP FRVA KG K+GIDA+II F TPAEG+N+LFIKQ D+ +GADFP Sbjct: 47 IKIKIADTSTNPVFRVAKSKGFLEKYGIDADIITFATPAEGINSLFIKQADIGWGADFPS 106 Query: 104 LNAVAKGEYSIIXXXXXXXXXXXXVWKLYVKDEIKSAADLKGKNLSFMRGTFLPYLWDEY 163 LNAV+KGE+SII WKL+V+DEI+S ADLKGK LS +RGTFLPYLWD Y Sbjct: 107 LNAVSKGEFSIIAATGTDTEAAAAQWKLFVRDEIQSPADLKGKKLSTLRGTFLPYLWDVY 166 Query: 164 LKEQGIALSDVTLTGQGAFDEAFIALKQGDVDAAWFSGSALTGKLAALEGVHELTDMSQT 223 LK+ G+A D GQG FDEA++ALK+G++DA+W G+ L K A+EGVHELTDMS+T Sbjct: 167 LKDNGVAAGDTKEIGQGGFDEAYVALKKGEIDASWVVGATLIDKFKAIEGVHELTDMSKT 226 Query: 224 PVRLGMGLVAGNAFVQANPDGIGQFLAAVDEASAYAQEHPGEVADLMFKEVKQPKEATLK 283 +R+G ++A N+ ++ +P I FL A+DE S Y +P E AD++F E KQPKEAT++ Sbjct: 227 SIRIGGTIIAPNSLIKDHPQAIANFLKALDETSKYIAANPDETADILFAETKQPKEATIR 286 Query: 284 DLPVNPWKVGFTQAAYDSLAGQKKYMVDTGIIEQDFDLDSKLDLEPLRKALPDKVTYTK 342 DL N W VGFTQ ++DSL QK YMV GII+ DF+L KL L+ ++ A+PD+ TY K Sbjct: 287 DLATNNWTVGFTQQSFDSLTNQKNYMVGAGIIQNDFNLADKLSLDGVQLAVPDQFTYKK 345 >Q639T0.1 Q639T0_BACCZ ABC transporter, periplasmic substrate-binding protein; possible sulfonate/taurine transporter Length = 340 Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 99/284 (34%), Positives = 154/284 (54%), Gaps = 1/284 (0%) Query: 57 FRVALDKGIFAKHGIDAEIINFGTPAEGVNALFIKQVDVAFGADFPVLNAVAKGEYSIIX 116 FR A +G F K+GI A++ NF + VNA+ +Q D AD+ +LN++ KG+ +I Sbjct: 57 FRAAEKQGYFEKNGIKAQLSNFAYGIDTVNAVLTEQADTGLAADYALLNSLGKGDMVVIS 116 Query: 117 XXXXXXXXXXXVWKLYVKDEIKSAADLKGKNLSFMRGTFLPYLWDEYLKEQGIALSDVTL 176 +L VK+EIK+ DLKGK L +GT Y+W +YL + I D+T Sbjct: 117 TLTRGNEKSSKDNELLVKEEIKTENDLKGKKLGVPKGTVTEYVWAKYLAAKRINEKDITF 176 Query: 177 TGQGAFDEAFIALKQGDVDAAWFSGSALTGKLAALEGVHELTDMSQTPVRLGMGLVAGNA 236 DEA + +K GD+DA W SG AL K ++GV +L D+ V + L+A + Sbjct: 177 VPYSTPDEAIVGMKNGDIDAVWSSG-ALKDKFKNIKGVTKLGDLESAGVTIDSYLLAKRS 235 Query: 237 FVQANPDGIGQFLAAVDEASAYAQEHPGEVADLMFKEVKQPKEATLKDLPVNPWKVGFTQ 296 FV+ NP + L A+ E Y + E A L F+++K P++ LKD+ + +GFT+ Sbjct: 236 FVEKNPKAVENTLKALSEGIKYVGNNKKETAKLAFEQLKLPEKDALKDIERQNYVLGFTE 295 Query: 297 AAYDSLAGQKKYMVDTGIIEQDFDLDSKLDLEPLRKALPDKVTY 340 L K ++ + G ++ ++L K++LE L+KA P+ VTY Sbjct: 296 EDAKHLEDMKVWLEEKGKLKDKYELKDKINLEALKKAFPESVTY 339 >B9J4C8.1 B9J4C8_BACCQ Lipoprotein, putative Length = 340 Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 154/284 (54%), Gaps = 1/284 (0%) Query: 57 FRVALDKGIFAKHGIDAEIINFGTPAEGVNALFIKQVDVAFGADFPVLNAVAKGEYSIIX 116 FR A +G F K+ I A++ NF + VNA+ +Q D AD+ +LN++ KG+ +I Sbjct: 57 FRAAEKQGYFEKNSIKAQLSNFAYGIDTVNAVLTEQADTGLAADYALLNSLGKGDMVVIS 116 Query: 117 XXXXXXXXXXXVWKLYVKDEIKSAADLKGKNLSFMRGTFLPYLWDEYLKEQGIALSDVTL 176 +L V++ IK+ DLKGK L +GT Y+W +YL + I D+T Sbjct: 117 TLTRGNEKSSKDNELLVREGIKTENDLKGKKLGVPKGTVTEYVWAKYLAAKHINEKDITF 176 Query: 177 TGQGAFDEAFIALKQGDVDAAWFSGSALTGKLAALEGVHELTDMSQTPVRLGMGLVAGNA 236 DEA + +K GD+DA W SG AL K ++GV +L D+ V + L+A + Sbjct: 177 VPYSTPDEAIVGMKNGDIDAVWSSG-ALKDKFKNIKGVTKLGDLESAGVTIDSYLLAKRS 235 Query: 237 FVQANPDGIGQFLAAVDEASAYAQEHPGEVADLMFKEVKQPKEATLKDLPVNPWKVGFTQ 296 FV+ NP + + A+ E Y + + E A L F+++K P++ LKD+ + +GFT+ Sbjct: 236 FVEKNPKAVENTIKALSEGIKYVENNKKETAKLAFEQLKLPEKDALKDIERQNYVLGFTK 295 Query: 297 AAYDSLAGQKKYMVDTGIIEQDFDLDSKLDLEPLRKALPDKVTY 340 L KK++ + G ++ ++L K+DLE L+KA P+ VTY Sbjct: 296 EDAKHLEDMKKWLEEKGKLKDKYELKDKIDLESLKKAFPESVTY 339 >B7HVN9.1 B7HVN9_BACC7 Lipoprotein, putative Length = 340 Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 154/284 (54%), Gaps = 1/284 (0%) Query: 57 FRVALDKGIFAKHGIDAEIINFGTPAEGVNALFIKQVDVAFGADFPVLNAVAKGEYSIIX 116 FR A +G F K+ I A++ NF + VNA+ +Q D AD+ +LN++ KG+ +I Sbjct: 57 FRAAEKQGYFEKNSIKAQLSNFAYGIDTVNAVLTEQADTGLAADYALLNSLGKGDMVVIS 116 Query: 117 XXXXXXXXXXXVWKLYVKDEIKSAADLKGKNLSFMRGTFLPYLWDEYLKEQGIALSDVTL 176 +L V++ IK+ DLKGK L +GT Y+W +YL + I D+T Sbjct: 117 TLTRGNEKSSKDNELLVREGIKTENDLKGKKLGVPKGTVTEYVWAKYLAAKHINEKDITF 176 Query: 177 TGQGAFDEAFIALKQGDVDAAWFSGSALTGKLAALEGVHELTDMSQTPVRLGMGLVAGNA 236 DEA + +K GD+DA W SG AL K ++GV +L D+ V + L+A + Sbjct: 177 VPYSTPDEAIVGMKNGDIDAVWSSG-ALKDKFKNIKGVTKLGDLESAGVTIDSYLLAKRS 235 Query: 237 FVQANPDGIGQFLAAVDEASAYAQEHPGEVADLMFKEVKQPKEATLKDLPVNPWKVGFTQ 296 FV+ NP + + A+ E Y + + E A L F+++K P++ LKD+ + +GFT+ Sbjct: 236 FVEKNPKAVENTIKALSEGIKYVENNKKETAKLAFEQLKLPEKDALKDIERQNYVLGFTK 295 Query: 297 AAYDSLAGQKKYMVDTGIIEQDFDLDSKLDLEPLRKALPDKVTY 340 L KK++ + G ++ ++L K+DLE L+KA P+ VTY Sbjct: 296 EDAKHLEDMKKWLEEKGKLKDKYELKDKIDLESLKKAFPESVTY 339 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,795,338,790 Number of extensions: 72794902 Number of successful extensions: 186933 Number of sequences better than 1.0e-05: 98 Number of HSP's gapped: 187280 Number of HSP's successfully gapped: 98 Length of query: 342 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 206 Effective length of database: 1,779,438,163 Effective search space: 366564261578 Effective search space used: 366564261578 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)