BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0564.0060.p
         (176 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C3J643.1 C3J643_9BACI Putative uncharacterized protein                 58   3e-07
B7YAN8.1 B7YAN8_9BACI Putative uncharacterized protein                 58   3e-07
C5D906.1 C5D906_9BACI Regulatory protein MerR                          58   4e-07
B9J6I0.1 B9J6I0_BACCQ Putative uncharacterized protein                 54   5e-06

>C3J643.1 C3J643_9BACI Putative uncharacterized protein
          Length = 152

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 14/102 (13%)

Query: 38  ELKLREEQIVSLLSEEALRKVDASILS--ADQINSFDPTPVTLSVPEYLSVRDVSKLTGL 95
           EL+ R+++I S LS++  + V   IL+  A+Q           ++P+ L VRDV+ L  +
Sbjct: 39  ELEKRKKEIYSNLSDQEKQSV-RHILTEMAEQ-----------TIPDDLHVRDVALLLDV 86

Query: 96  VPQVVRRHCANGKWEAEQVAGEKSTWRIKPEPFMKLSNWATF 137
            PQ+VRR+CA GK EA Q  G+   W I    F    NW +F
Sbjct: 87  TPQMVRRYCAEGKIEAYQRLGDSGKWIIPAAQFFHHPNWPSF 128


>B7YAN8.1 B7YAN8_9BACI Putative uncharacterized protein
          Length = 152

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 14/102 (13%)

Query: 38  ELKLREEQIVSLLSEEALRKVDASILS--ADQINSFDPTPVTLSVPEYLSVRDVSKLTGL 95
           EL+ R+++I S LS++  + V   IL+  A+Q           ++P+ L VRDV+ L  +
Sbjct: 39  ELEKRKKEIYSNLSDQEKQSV-RHILTEMAEQ-----------TIPDDLHVRDVALLLDV 86

Query: 96  VPQVVRRHCANGKWEAEQVAGEKSTWRIKPEPFMKLSNWATF 137
            PQ+VRR+CA GK EA Q  G+   W I    F    NW +F
Sbjct: 87  TPQMVRRYCAEGKIEAYQRLGDSGKWIIPAAQFFHHPNWPSF 128


>C5D906.1 C5D906_9BACI Regulatory protein MerR
          Length = 157

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%)

Query: 79  SVPEYLSVRDVSKLTGLVPQVVRRHCANGKWEAEQVAGEKSTWRIKPEPFMKLSNWATF 137
           ++PEYL+VRDV+ L  + PQ+VRR+CA GK +A Q       W I    F+   NW  F
Sbjct: 73  TIPEYLTVRDVALLLDVTPQMVRRYCAEGKIDAYQRLEGSGKWIIPTAQFLHHPNWPAF 131


>B9J6I0.1 B9J6I0_BACCQ Putative uncharacterized protein
          Length = 154

 Score = 53.9 bits (128), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%)

Query: 79  SVPEYLSVRDVSKLTGLVPQVVRRHCANGKWEAEQVAGEKSTWRIKPEPFM 129
           + PEYL+ +DV+KL  +  Q+VRR+CA+GK +A Q       W IK E F+
Sbjct: 68  NYPEYLTTQDVAKLLKISTQMVRRYCADGKIDATQRMEGTGAWLIKTEQFL 118


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 936,828,792
Number of extensions: 31421884
Number of successful extensions: 66458
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 66458
Number of HSP's successfully gapped: 4
Length of query: 176
Length of database: 3,060,696,203
Length adjustment: 126
Effective length of query: 50
Effective length of database: 1,873,648,313
Effective search space: 93682415650
Effective search space used: 93682415650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)