BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0059.p (193 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1PC02.1 C1PC02_BACCO Putative uncharacterized protein 97 6e-19 C5D907.1 C5D907_9BACI Putative uncharacterized protein 94 5e-18 C3J644.1 C3J644_9BACI Putative uncharacterized protein 93 1e-17 B7YAN7.1 B7YAN7_9BACI Putative uncharacterized protein 93 1e-17 B9J6I1.1 B9J6I1_BACCQ Putative uncharacterized protein 69 2e-10 >C1PC02.1 C1PC02_BACCO Putative uncharacterized protein Length = 210 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 102/194 (52%), Gaps = 7/194 (3%) Query: 1 MSAYLLDSNLFRYTHDDNXXXXXXXXXX--XXXXXXXXXNGQSIILLSAEVKCELEVQMH 58 M Y +D+N+ RY + +G++II + EV EL+ Q Sbjct: 9 MKQYTIDTNVLRYKANSKAEPSHKKAAKLFWKQVIQEIQDGEAIIGVPQEVIRELKFQSS 68 Query: 59 TLKDRDQRIISSMLEGYLPVSANLS-VDLEHELRKFSNYIRSTRFDGVFKDPHYKLDYLR 117 TL ++ IS +LE V +L+ +++EH++R+ S Y+RS F V + K++Y Sbjct: 69 TLSPKENEHISDLLEPCQEVLPDLANINIEHKIREMSAYVRS-EFTTVVDE--RKMEYPA 125 Query: 118 ASDARILVDAYLNDAILVTANIKDFISYSVFCGPGEQRLYDFLNKRYVEVSSEARMAIEA 177 +D+RIL AY +D++LVT+NIK+F+ Y + RLYD LNK YV + +E I Sbjct: 126 VADSRILHAAYYSDSVLVTSNIKEFLLYPLLFDDW-NRLYDLLNKEYVNIPTELYQEIHK 184 Query: 178 DPFYLSIQSKLEAL 191 DPF+ S+ S L Sbjct: 185 DPFFKSLLSDFHGL 198 >C5D907.1 C5D907_9BACI Putative uncharacterized protein Length = 201 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 5/182 (2%) Query: 3 AYLLDSNLFRYTHDD--NXXXXXXXXXXXXXXXXXXXNGQSIILLSAEVKCELEVQMHTL 60 Y+LD+N+FRY + + NG+S++ + EV ELEVQ +TL Sbjct: 9 VYMLDTNVFRYKSNPRAHKSYKKATKRFWRNVLQEFRNGESVLYIPKEVIRELEVQSYTL 68 Query: 61 KDRDQRIISSMLEGYLPVSANLSV-DLEHELRKFSNYIRSTRFDGVFKDPHYKLDYLRAS 119 +++ + I+ +LE +L+ ++EH++RK + Y+RS + + ++Y S Sbjct: 69 SEKENQRIAQLLELIEETVPDLATPEIEHQIRKITAYVRSEYKSDI--NAARDMEYGSVS 126 Query: 120 DARILVDAYLNDAILVTANIKDFISYSVFCGPGEQRLYDFLNKRYVEVSSEARMAIEADP 179 DARIL+ A+ D I VTANIKDF+ Y + E RL+D L++ YV + I DP Sbjct: 127 DARILLAAWQYDCIFVTANIKDFMLYPLLFPQNESRLFDLLSENYVIIDPTVYENIHRDP 186 Query: 180 FY 181 + Sbjct: 187 VF 188 >C3J644.1 C3J644_9BACI Putative uncharacterized protein Length = 202 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 100/194 (51%), Gaps = 9/194 (4%) Query: 3 AYLLDSNLFRYTHDDNXXXXXXXXXX--XXXXXXXXXNGQSIILLSAEVKCELEVQMHTL 60 AYLLD+N+FRY + + ++++ + EV ELE+Q +TL Sbjct: 10 AYLLDTNVFRYKSSPSAHTNHKKAAKRFWKDVLQEVRHEEAVLYIPKEVIRELELQSYTL 69 Query: 61 KDRDQRIISSMLEGY-LPVSANLSVDLEHELRKFSNYIRS--TRFDGVFKDPHYKLDYLR 117 +++++ IS +LE + + + D+EH++RK + YIRS R +D ++Y Sbjct: 70 GEKERQRISELLENITITIPDWTTPDMEHQVRKMAAYIRSEYQRKINAMRD----MEYGS 125 Query: 118 ASDARILVDAYLNDAILVTANIKDFISYSVFCGPGEQRLYDFLNKRYVEVSSEARMAIEA 177 SDARIL+ A+ D ILVTANIKDF Y + E RL + L+ Y+ +S I Sbjct: 126 VSDARILLTAWQYDCILVTANIKDFALYPLLFPQHEHRLLNLLSNDYITISPSIYDTIHH 185 Query: 178 DPFYLSIQSKLEAL 191 DP + + +L L Sbjct: 186 DPIFTGMLQELNDL 199 >B7YAN7.1 B7YAN7_9BACI Putative uncharacterized protein Length = 202 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 100/194 (51%), Gaps = 9/194 (4%) Query: 3 AYLLDSNLFRYTHDDNXXXXXXXXXX--XXXXXXXXXNGQSIILLSAEVKCELEVQMHTL 60 AYLLD+N+FRY + + ++++ + EV ELE+Q +TL Sbjct: 10 AYLLDTNVFRYKSSPSAHTNHKKAAKRFWKDVLQEVRHEEAVLYIPKEVIRELELQSYTL 69 Query: 61 KDRDQRIISSMLEGY-LPVSANLSVDLEHELRKFSNYIRS--TRFDGVFKDPHYKLDYLR 117 +++++ IS +LE + + + D+EH++RK + YIRS R +D ++Y Sbjct: 70 GEKERQRISELLENITITIPDWTTPDMEHQVRKMAAYIRSEYQRKINAMRD----MEYGS 125 Query: 118 ASDARILVDAYLNDAILVTANIKDFISYSVFCGPGEQRLYDFLNKRYVEVSSEARMAIEA 177 SDARIL+ A+ D ILVTANIKDF Y + E RL + L+ Y+ +S I Sbjct: 126 VSDARILLTAWQYDCILVTANIKDFALYPLLFPQHEHRLLNLLSNDYITISPSIYDTIHH 185 Query: 178 DPFYLSIQSKLEAL 191 DP + + +L L Sbjct: 186 DPIFTGMLQELNDL 199 >B9J6I1.1 B9J6I1_BACCQ Putative uncharacterized protein Length = 207 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 2/190 (1%) Query: 1 MSAYLLDSNLFRYTHDDNXXXXXXXXXXXXXXXXXXXNGQSIILLSAEVKCELEVQMHTL 60 ++ LLD+N FRY N + + S EV ELEVQ + Sbjct: 14 VTPLLLDTNTFRYQATPGSQYKDVANRFWKKTLTRLENKEIGLYTSDEVVRELEVQSFSA 73 Query: 61 KDRDQRIISSMLEGYLPVSANL-SVDLEHELRKFSNYIRSTRFDGVFKDPHYKLDYLRAS 119 ++ +I++ +L + V L + EH +R+ S ++ S + Y Y Sbjct: 74 HPKEVKILNEILLPQIDVLDFLYDAEAEHLVRRASAFL-SQNYRLQLPSGKYMEKYPGVG 132 Query: 120 DARILVDAYLNDAILVTANIKDFISYSVFCGPGEQRLYDFLNKRYVEVSSEARMAIEADP 179 DARIL+ Y ND +VTAN+KDF+ Y + + LYD + ++YV + + I+ D Sbjct: 133 DARILLTGYENDCEIVTANVKDFMLYPLLYPQSAKVLYDLIQEKYVVIDPQLYDRIQKDT 192 Query: 180 FYLSIQSKLE 189 ++ +SK+E Sbjct: 193 RFIDFKSKIE 202 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 914,212,918 Number of extensions: 32093362 Number of successful extensions: 70230 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 70219 Number of HSP's successfully gapped: 5 Length of query: 193 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 65 Effective length of database: 1,854,806,283 Effective search space: 120562408395 Effective search space used: 120562408395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)