BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0054.p (342 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2ZXH9.1 C2ZXH9_BACCE Putative uncharacterized protein 300 1e-79 C2ZFX7.1 C2ZFX7_BACCE Putative uncharacterized protein 300 1e-79 C3A4N8.1 C3A4N8_BACMY UPF0118 membrane protein 290 2e-76 C2XSR1.1 C2XSR1_BACCE UPF0118 membrane protein 290 2e-76 B5UQX3.1 B5UQX3_BACCE Membrane protein 288 4e-76 >C2ZXH9.1 C2ZXH9_BACCE Putative uncharacterized protein Length = 347 Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 151/319 (47%), Positives = 218/319 (68%), Gaps = 10/319 (3%) Query: 27 YSIRDMLNLVLLTFLIAYVMNSFQVLLSKRIGKYVKVNSKVIIVVLYLALITMIVLALVK 86 Y ++ MLNL+L+TF++ Y+M+ FQ +S+++ ++ +N K+II +LY+ L+ I + L K Sbjct: 26 YGMQSMLNLILITFMLTYLMDRFQKFISRKLDHFMPINRKIIIALLYVMLVAGIAITLFK 85 Query: 87 YLPKVFTQIKQXXXXXXXXXXXXXXQNEVTQYIFNQLKDLNYESYVTHGIG----YVLRI 142 YLP + QI Q +E+ +Y N + + YV G+ + + Sbjct: 86 YLPVLTIQISQLIYQFNVFLRNPP-DSELIKYAVNAVNHMELSKYVGQGVDILYKSITNV 144 Query: 143 SNWGTTFVLATILSFVFILEKNRIVSFTSRLRDSKISWFYVELEYFGKKFISSFGKVIEA 202 +G +L+ ILS F+LEK RIV+FTS+ ++S+++ FY E+EYFGKKF SFGKVIEA Sbjct: 145 GKFGLQVLLSVILSLFFLLEKARIVAFTSKFKESRLAIFYNEIEYFGKKFARSFGKVIEA 204 Query: 203 QILIALFNTMFTVIGLWILGFFFEPFPYLFALSIMIFLLSLIPVVGFVISLIPLCIIAYN 262 Q LIA+ N + +VI LWILGF P L L++MIFLL LIPV G +ISL PLC+IAYN Sbjct: 205 QFLIAIVNCVLSVIALWILGF-----PQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYN 259 Query: 263 IGGLAMTLYVLGLIAVLHFMEGYFLNPKLMSSKMNLPMFYTFIVLLFSEHYIGVWGLILG 322 IGG+ +Y+L ++ V+H +E Y LNPK MS K NLP+FYTF++L+FSEH++GVWGLI+G Sbjct: 260 IGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMILIFSEHFLGVWGLIIG 319 Query: 323 IPIFVFFLDILDITREKPE 341 IPIF+F LD+LD+T ++ E Sbjct: 320 IPIFIFLLDVLDVTSDEME 338 >C2ZFX7.1 C2ZFX7_BACCE Putative uncharacterized protein Length = 347 Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 151/319 (47%), Positives = 218/319 (68%), Gaps = 10/319 (3%) Query: 27 YSIRDMLNLVLLTFLIAYVMNSFQVLLSKRIGKYVKVNSKVIIVVLYLALITMIVLALVK 86 Y ++ MLNL+L+TF++ Y+M+ FQ +S+++ ++ +N K+II +LY+ L+ I + L K Sbjct: 26 YGMQSMLNLILITFMLTYLMDRFQKFISRKLDHFMPINRKIIIALLYVMLVAGIAITLFK 85 Query: 87 YLPKVFTQIKQXXXXXXXXXXXXXXQNEVTQYIFNQLKDLNYESYVTHGIG----YVLRI 142 YLP + QI Q +E+ +Y N + + YV G+ + + Sbjct: 86 YLPVLTIQISQLIYQFNVFLRNPP-DSELIKYAVNAVNHMELSKYVGQGVDILYKSITNV 144 Query: 143 SNWGTTFVLATILSFVFILEKNRIVSFTSRLRDSKISWFYVELEYFGKKFISSFGKVIEA 202 +G +L+ ILS F+LEK RIV+FTS+ ++S+++ FY E+EYFGKKF SFGKVIEA Sbjct: 145 GKFGLQVLLSVILSLFFLLEKARIVAFTSKFKESRLAIFYNEIEYFGKKFARSFGKVIEA 204 Query: 203 QILIALFNTMFTVIGLWILGFFFEPFPYLFALSIMIFLLSLIPVVGFVISLIPLCIIAYN 262 Q LIA+ N + +VI LWILGF P L L++MIFLL LIPV G +ISL PLC+IAYN Sbjct: 205 QFLIAIVNCVLSVIALWILGF-----PQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYN 259 Query: 263 IGGLAMTLYVLGLIAVLHFMEGYFLNPKLMSSKMNLPMFYTFIVLLFSEHYIGVWGLILG 322 IGG+ +Y+L ++ V+H +E Y LNPK MS K NLP+FYTF++L+FSEH++GVWGLI+G Sbjct: 260 IGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMILIFSEHFLGVWGLIIG 319 Query: 323 IPIFVFFLDILDITREKPE 341 IPIF+F LD+LD+T ++ E Sbjct: 320 IPIFIFLLDVLDVTSDEME 338 >C3A4N8.1 C3A4N8_BACMY UPF0118 membrane protein Length = 339 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 151/344 (43%), Positives = 222/344 (64%), Gaps = 14/344 (4%) Query: 1 MDVFKRYYANLTIRRFXXXXXXXXXXYSIRDMLNLVLLTFLIAYVMNSFQVLLSKRIGKY 60 M+ K ++ + +RF Y ++ M+NL+L+TF++ ++M+ FQ +SK++ Sbjct: 1 MNEVKNFFRSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQKFISKKL--- 57 Query: 61 VKVNSKVIIVVLYLALITMIVLALVKYLPKVFTQIKQXXXXXXXXXXXXXXQNEVTQYIF 120 KVN KV+I LY+ L+T IV L KYLP + QI Q NE+ +Y+ Sbjct: 58 -KVNRKVVIACLYIVLVTFIVTTLYKYLPVLTIQISQLIYQFKLFFQHPP-DNEMIRYVL 115 Query: 121 NQLKDLNYESYVTHGIGYVLR-ISNWGTTFVLATILSFVFIL---EKNRIVSFTSRLRDS 176 + + ++ Y+ G+ + + I+N G + + + + EK RI+SFTS+ +DS Sbjct: 116 SAINEMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIISFTSKFKDS 175 Query: 177 KISWFYVELEYFGKKFISSFGKVIEAQILIALFNTMFTVIGLWILGFFFEPFPYLFALSI 236 K+ FY E+ YFG++F SFGKVIEAQ LIA+ N + TVI L ILGF P L L++ Sbjct: 176 KLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCVLTVIALVILGF-----PQLLVLAV 230 Query: 237 MIFLLSLIPVVGFVISLIPLCIIAYNIGGLAMTLYVLGLIAVLHFMEGYFLNPKLMSSKM 296 M+FLL LIPV G +ISL PLCIIAYN+GG+ +Y+L I V+H +E YFLNPK MS+K Sbjct: 231 MVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFMSAKT 290 Query: 297 NLPMFYTFIVLLFSEHYIGVWGLILGIPIFVFFLDILDITREKP 340 NLP+FYTF++L+FSEH++G+WGLI+GIPIF+F LD+LD+ ++P Sbjct: 291 NLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLDVNNDEP 334 >C2XSR1.1 C2XSR1_BACCE UPF0118 membrane protein Length = 339 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 151/344 (43%), Positives = 222/344 (64%), Gaps = 14/344 (4%) Query: 1 MDVFKRYYANLTIRRFXXXXXXXXXXYSIRDMLNLVLLTFLIAYVMNSFQVLLSKRIGKY 60 M+ K ++ + +RF Y ++ M+NL+L+TF++ ++M+ FQ +SK++ Sbjct: 1 MNEVKNFFRSRGFQRFLVLIILVLVLYGLKSMINLILITFILTFLMDRFQKFISKKL--- 57 Query: 61 VKVNSKVIIVVLYLALITMIVLALVKYLPKVFTQIKQXXXXXXXXXXXXXXQNEVTQYIF 120 KVN KV+I LY+ L+T IV L KYLP + QI Q NE+ +Y+ Sbjct: 58 -KVNRKVVIACLYIVLVTFIVTTLYKYLPVLTIQISQLIYQFKLFFQHPP-DNEMIRYVL 115 Query: 121 NQLKDLNYESYVTHGIGYVLR-ISNWGTTFVLATILSFVFIL---EKNRIVSFTSRLRDS 176 + + ++ Y+ G+ + + I+N G + + + + EK RI+SFTS+ +DS Sbjct: 116 SAINEMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIISFTSKFKDS 175 Query: 177 KISWFYVELEYFGKKFISSFGKVIEAQILIALFNTMFTVIGLWILGFFFEPFPYLFALSI 236 K+ FY E+ YFG++F SFGKVIEAQ LIA+ N + TVI L ILGF P L L++ Sbjct: 176 KLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCVLTVIALVILGF-----PQLLVLAV 230 Query: 237 MIFLLSLIPVVGFVISLIPLCIIAYNIGGLAMTLYVLGLIAVLHFMEGYFLNPKLMSSKM 296 M+FLL LIPV G +ISL PLCIIAYN+GG+ +Y+L I V+H +E YFLNPK MS+K Sbjct: 231 MVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFMSAKT 290 Query: 297 NLPMFYTFIVLLFSEHYIGVWGLILGIPIFVFFLDILDITREKP 340 NLP+FYTF++L+FSEH++G+WGLI+GIPIF+F LD+LD+ ++P Sbjct: 291 NLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLDVNNDEP 334 >B5UQX3.1 B5UQX3_BACCE Membrane protein Length = 340 Score = 288 bits (738), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 152/344 (44%), Positives = 222/344 (64%), Gaps = 14/344 (4%) Query: 1 MDVFKRYYANLTIRRFXXXXXXXXXXYSIRDMLNLVLLTFLIAYVMNSFQVLLSKRIGKY 60 M+ K ++ + +RF Y ++ M+NL+L+TF++ ++MN FQ +SK++ Sbjct: 1 MNEVKNFFRSRGFQRFLVLIILTLVLYGLKSMINLILITFILTFLMNRFQRFISKKL--- 57 Query: 61 VKVNSKVIIVVLYLALITMIVLALVKYLPKVFTQIKQXXXXXXXXXXXXXXQNEVTQYIF 120 K+N KV+I LY+ L+T IV L KYLP + QI Q NE+ +YI Sbjct: 58 -KMNRKVVIACLYIILVTFIVTTLYKYLPVLTIQISQLIYQFKLFFQHPP-DNEMIRYIL 115 Query: 121 NQLKDLNYESYVTHGIGYVLR-ISNWGTTFVLATILSFVFIL---EKNRIVSFTSRLRDS 176 + + ++ Y+ G+ + + I+N G + + + + EK RI+SFTS+ +DS Sbjct: 116 SAINEMEVSKYIEQGVDVIYQSIANIGKVSLQIILSLILSLFFLLEKERIISFTSKFKDS 175 Query: 177 KISWFYVELEYFGKKFISSFGKVIEAQILIALFNTMFTVIGLWILGFFFEPFPYLFALSI 236 K+ FY E+ YFG++F SFGKVIEAQ LIA+ N + TVI L ILGF P L L++ Sbjct: 176 KLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNGVLTVIALVILGF-----PQLLVLTV 230 Query: 237 MIFLLSLIPVVGFVISLIPLCIIAYNIGGLAMTLYVLGLIAVLHFMEGYFLNPKLMSSKM 296 M+FLL LIPV G +ISL PLCIIAYN+GG+ +Y+L I V+H +E YFLNPK MS+K Sbjct: 231 MVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFMSAKT 290 Query: 297 NLPMFYTFIVLLFSEHYIGVWGLILGIPIFVFFLDILDITREKP 340 NLP+FYTF++L+FSEH++G+WGLI+GIPIF+F LD+LD+ ++P Sbjct: 291 NLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLDVNNDEP 334 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.334 0.149 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,690,639,623 Number of extensions: 65208027 Number of successful extensions: 379745 Number of sequences better than 1.0e-05: 1592 Number of HSP's gapped: 378798 Number of HSP's successfully gapped: 1592 Length of query: 342 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 206 Effective length of database: 1,779,438,163 Effective search space: 366564261578 Effective search space used: 366564261578 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 131 (55.1 bits)