BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0053.p (287 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D7D5.1 B1D7D5_9BACL Putative uncharacterized protein 291 4e-77 B1YEM3.1 B1YEM3_EXIS2 Short-chain dehydrogenase/reductase SDR 290 1e-76 A3S8M7.1 A3S8M7_9RHOB Putative uncharacterized protein 214 9e-54 C4WAZ0.1 C4WAZ0_STAWA Retinol dehydrogenase 8 EC=1.1.1.- 200 1e-49 A4EYN4.1 A4EYN4_9RHOB Putative uncharacterized protein 197 8e-49 >B1D7D5.1 B1D7D5_9BACL Putative uncharacterized protein Length = 202 Score = 291 bits (745), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 132/202 (65%), Positives = 168/202 (83%) Query: 86 VLFCNAGFGYLRALGQAPVEDIHRVFDTNVYGVMHTIRAALPLLRKTGYGHIVATSSVGG 145 +LFCNAGFG+LR LGQA +++I VF+TNV+GV+HTI+AALP+LR+ G HI+ATSSVGG Sbjct: 1 MLFCNAGFGFLRTLGQASMDEIRNVFETNVFGVIHTIKAALPMLREAGKAHIMATSSVGG 60 Query: 146 LVGQPMNEIYCASKFALEGLLESMATYYKPQFNIDISLLEPGAIATEFNNTVLGHVSETG 205 LVGQP NEIYC+SKFALEGLLESMATYYKP FNIDI+L+EPGAIAT FN+TV + TG Sbjct: 61 LVGQPFNEIYCSSKFALEGLLESMATYYKPLFNIDITLVEPGAIATNFNDTVFKQLGSTG 120 Query: 206 GILDDEYKPVIEAYTQAFLQRNVEPQTADSVAEVMWNLVHMEPKPLRIRTSEQAENFVSR 265 GIL+DEYK +I+ Y + F +RN PQTA+SVAEV++ L+++E KPLRIRTSE A+ F + Sbjct: 121 GILNDEYKSLIDRYVEQFSKRNAVPQTAESVAEVVFGLINLEEKPLRIRTSEAADQFTAY 180 Query: 266 KVSTDPTGLEGVLSTRKIQLNM 287 K DPTGL+G+L+ RK+ + + Sbjct: 181 KTEKDPTGLDGMLNVRKLHMGL 202 >B1YEM3.1 B1YEM3_EXIS2 Short-chain dehydrogenase/reductase SDR Length = 279 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 140/278 (50%), Positives = 196/278 (70%), Gaps = 2/278 (0%) Query: 11 KIICITXXXXXXXXXXXXKFAKEGWTVYAGTRNLERDQERYREVEHLTFVELEVTKPESI 70 + I IT +FA+EGWTVYAGTR L E+ + HL F+E++VT S+ Sbjct: 2 RTIFITGASSGIGLATATRFAEEGWTVYAGTRELTPALEK-AALPHLHFLEVDVTDLMSL 60 Query: 71 QRVIGQIEQEQDKLDVLFCNAGFGYLRALGQAPVEDIHRVFDTNVYGVMHTIRAALPLLR 130 ++ + IEQE L+ LFCNAG G LRALGQA +I ++FD NV+GVM TI LPLL+ Sbjct: 61 KQAVSVIEQEVGHLNALFCNAGQGLLRALGQATSYEITQLFDINVFGVMRTIECCLPLLK 120 Query: 131 KTGYG-HIVATSSVGGLVGQPMNEIYCASKFALEGLLESMATYYKPQFNIDISLLEPGAI 189 G H++ATSS+ GLVGQPMNEIYCASKFALEGL ES+ATYYKP F+ID++L+EP A+ Sbjct: 121 AAPNGSHLLATSSISGLVGQPMNEIYCASKFALEGLFESLATYYKPFFSIDVTLIEPAAV 180 Query: 190 ATEFNNTVLGHVSETGGILDDEYKPVIEAYTQAFLQRNVEPQTADSVAEVMWNLVHMEPK 249 T F +VL + +TGG+ +D++KP+IE+Y + + R+ E Q+ +++AE+++ LVH + K Sbjct: 181 ETNFTASVLDRLEQTGGLHEDDFKPIIESYLRTYRVRHAERQSPETIAELIFKLVHADEK 240 Query: 250 PLRIRTSEQAENFVSRKVSTDPTGLEGVLSTRKIQLNM 287 PLR+RT+ + E FV+ K + DP+GL G L TR++ LN+ Sbjct: 241 PLRVRTAPEDEAFVAHKTANDPSGLVGTLKTRQLTLNL 278 >A3S8M7.1 A3S8M7_9RHOB Putative uncharacterized protein Length = 284 Score = 214 bits (544), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 115/272 (42%), Positives = 158/272 (58%), Gaps = 6/272 (2%) Query: 9 MGKIICITXXXXXXXXXXXXKFAKEGWTVYAGTRNLER----DQERYREVEHLTFVELEV 64 M K+I IT + A+ G TVYA RN ++ D L ++L+V Sbjct: 1 MPKVILITGTSTGLGVATAVQAAQAGHTVYATMRNTQKRGTLDAAAQVAGVTLNVLQLDV 60 Query: 65 TKPESIQRVIGQIEQEQDKLDVLFCNAGFGYLRALGQAPVEDIHRVFDTNVYGVMHTIRA 124 +S+ + + EQ ++DVL NAG GY+R+L QA DI ++ D N GV I+A Sbjct: 61 QDADSVNAAVDTVIAEQGRIDVLINNAGMGYVRSLEQAEESDIQKILDINYTGVTRCIKA 120 Query: 125 ALPLLRKTGYGHIVATSSVGGLVGQPMNEIYCASKFALEGLLESMATYYKPQFNIDISLL 184 +P +RK GH++ SSVGGLVGQP NEIYC +KFA+EGL E+MA+Y P F I + + Sbjct: 121 VMPHMRKARAGHVINISSVGGLVGQPFNEIYCGAKFAVEGLTEAMASYITPAFGIHFTAV 180 Query: 185 EPGAIATEFNNTVLGHVSETGGILDDEYKPVIEAYTQAFLQRNVEP--QTADSVAEVMWN 242 EPG IA+EF NTVL V +TGG+L+DEY P+++ Y R QTAD VA ++ Sbjct: 181 EPGGIASEFANTVLEQVEQTGGMLEDEYLPILQKYITGSQDRQETGIYQTADEVAAIVMK 240 Query: 243 LVHMEPKPLRIRTSEQAENFVSRKVSTDPTGL 274 ++ E P+R RTSE +E+F K DP GL Sbjct: 241 VMGSEQPPVRTRTSEWSEDFSKLKTGLDPDGL 272 >C4WAZ0.1 C4WAZ0_STAWA Retinol dehydrogenase 8 EC=1.1.1.- Length = 285 Score = 200 bits (508), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 108/272 (39%), Positives = 156/272 (57%), Gaps = 8/272 (2%) Query: 11 KIICITXXXXXXXXXXXXKFAKEGWTVYAGTRNLERD----QERYREVEHLTFVELEVTK 66 KI IT AK G+ VY R+LE+ Q ++ L +L+VT Sbjct: 4 KIALITGSSTGLGLETASLLAKNGYKVYTTMRHLEKQDALIQLSQQDGIDLEVKQLDVTN 63 Query: 67 PESIQRVIGQIEQEQDKLDVLFCNAGFGYLRALGQAPVEDIHRVFDTNVYGVMHTIRAAL 126 + I +V+ I + ++D+L NAG G+++ A ++I + N+ GV+ +A L Sbjct: 64 LDRINQVVTDIINTEGRIDILINNAGAGFVKTTELASDDEIMWQLNLNLMGVIRMTKAVL 123 Query: 127 PLLRKTGYGHIVATSSVGGLVGQPMNEIYCASKFALEGLLESMATYYKPQFNIDISLLEP 186 P +R G I+ SSVGGLVGQP NEIYCA+KF +EG E+MA+Y +P+FNI +L+EP Sbjct: 124 PYMRNQRDGRIINISSVGGLVGQPFNEIYCATKFGVEGYTEAMASYVQPEFNIKFTLIEP 183 Query: 187 GAIATEFNNTVLGHVSETGGILDDEYKPVIEAYTQAFLQRNV---EPQTADSVAEVMWNL 243 G I +EF N V+ + TGG+ DDEYKPV+++Y L+ N QT++ VA V+ N Sbjct: 184 GGIQSEFTNNVMAQLQSTGGLKDDEYKPVLDSYLGG-LKENYGTGSSQTSEEVATVILNT 242 Query: 244 VHMEPKPLRIRTSEQAENFVSRKVSTDPTGLE 275 + ME P+R RTS+ +E F K DPTG E Sbjct: 243 LEMEEPPIRTRTSDWSEAFTELKTQADPTGKE 274 >A4EYN4.1 A4EYN4_9RHOB Putative uncharacterized protein Length = 285 Score = 197 bits (501), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 106/272 (38%), Positives = 155/272 (56%), Gaps = 8/272 (2%) Query: 9 MGKIICITXXXXXXXXXXXXKFAKEGWTVYAGTRNLERDQERYREVEH----LTFVELEV 64 M K + IT + G VYA R+ + E L ++L+V Sbjct: 1 MSKTVLITGTSSGLGLETALAASHAGHRVYATMRDPGKSSALRAAAEASGLGLEILQLDV 60 Query: 65 TKPESIQRVIGQIEQEQDKLDVLFCNAGFGYLRALGQAPVEDIHRVFDTNVYGVMHTIRA 124 PESI+ + ++ + + +D L NAG GYLR + QA EDI++V D N GV+ RA Sbjct: 61 QDPESIKTTVAEVLRREGHIDTLINNAGAGYLRNIEQASDEDINQVMDVNFMGVLRCTRA 120 Query: 125 ALPLLRKTGYGHIVATSSVGGLVGQPMNEIYCASKFALEGLLESMATYYKPQFNIDISLL 184 LP +R GHI+ SSVGGLVGQP NE+YCA+KFA+EGL ES+A+Y P F + + + Sbjct: 121 VLPHMRARKSGHIINISSVGGLVGQPFNEVYCAAKFAVEGLTESLASYVTPGFGVHFTSI 180 Query: 185 EPGAIATEFNNTVLGHVSETGGILDDEYKPVIEAY---TQAFLQRNVEPQTADSVAEVMW 241 +PG I +EF N+VL V TGG+L+D+Y P+++ Y +A + + +A++ A V+ Sbjct: 181 QPGGITSEFANSVLKQVEATGGMLEDDYLPLLQRYIGNARARMGGDAYQSSAEAAAVVLA 240 Query: 242 NLVHMEPKPLRIRTSEQAENFVSRKVSTDPTG 273 L +P PLR+RTS +E F + K + DP G Sbjct: 241 CLEQEDP-PLRLRTSAWSEGFCAFKTAADPDG 271 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,590,859,974 Number of extensions: 65544144 Number of successful extensions: 190347 Number of sequences better than 1.0e-05: 10213 Number of HSP's gapped: 193859 Number of HSP's successfully gapped: 10215 Length of query: 287 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 153 Effective length of database: 1,798,280,193 Effective search space: 275136869529 Effective search space used: 275136869529 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)