BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0052.p (298 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1HNW1.1 B1HNW1_LYSSC Putative uncharacterized protein 228 5e-58 Q2BB53.1 Q2BB53_9BACI Putative uncharacterized protein 226 2e-57 A3IAQ7.1 A3IAQ7_9BACI Putative uncharacterized protein 226 2e-57 Q8ETF1.1 Q8ETF1_OCEIH Hypothetical conserved protein 214 8e-54 B1YJM6.1 B1YJM6_EXIS2 Beta-lactamase domain protein 152 3e-35 >B1HNW1.1 B1HNW1_LYSSC Putative uncharacterized protein Length = 275 Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 107/270 (39%), Positives = 169/270 (62%), Gaps = 6/270 (2%) Query: 1 VLKWKRSEITLFQSELYETNSLVIESAEHVLVVDPCWLPREVAEIRQYVSGILGGKRLLL 60 +++++ + +T+FQS LY T S +I++ E +++ DP WLP E+ EI+ Y++ I G K+L + Sbjct: 1 MIQFQNNIMTVFQSALYMTTSAIIQTNEAIIMTDPNWLPNEIQEIQDYINNIQGNKQLYI 60 Query: 61 LFTHSDFDHIIGYGAFPEAEIIASRGFTDKSLEARATILEEIRTFDDDYYLRRPYAIAYP 120 ++THSDFDHIIG GAFPEA++IAS+ F D +A + +++I FD YYL R Y+ YP Sbjct: 61 IYTHSDFDHIIGSGAFPEAKVIASKRFADNLNKAES--IQKIHQFDQKYYLHRSYSPVYP 118 Query: 121 VVDHIMERDGQEMVFGELRLTGYIAPGHTNDGLFTVVDSHGLFIAGDYLSDVEFPYIYDS 180 VD ++ DG + + +T Y APGHT+DGLFTV++ +G F++GDYLSDVEFP+I+ S Sbjct: 119 SVDIVISEDGYTLELDSITMTFYQAPGHTDDGLFTVIEPYGFFVSGDYLSDVEFPFIFSS 178 Query: 181 STAYEATLDSVEQIIARHPVPLLIPGHGEAAESLLEIECRRVAGLGYIRSXXXXXXXXXX 240 Y T++ E+I+ H + IPGHG ++L EI+ R + Y+ Sbjct: 179 YKDYVNTINKAEKILLTHAITTHIPGHGLTTQNLQEIQKRIDSSKYYLTKLPHDKGELEQ 238 Query: 241 XXXXXXXXGCAFPRNMRKFHRSNQELLERE 270 +F M++ H N+E++++E Sbjct: 239 YLRSE----YSFFEGMKRIHSDNKEMIQKE 264 >Q2BB53.1 Q2BB53_9BACI Putative uncharacterized protein Length = 273 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 113/271 (41%), Positives = 159/271 (58%) Query: 1 VLKWKRSEITLFQSELYETNSLVIESAEHVLVVDPCWLPREVAEIRQYVSGILGGKRLLL 60 +L K +FQS L++TNS VI++ + VLV+DPCWLP E+ EIR YV G + + + Sbjct: 1 MLIHKDQNTAIFQSSLFKTNSAVIQTEDLVLVIDPCWLPHEIEEIRSYVYRSAGSRPMFV 60 Query: 61 LFTHSDFDHIIGYGAFPEAEIIASRGFTDKSLEARATILEEIRTFDDDYYLRRPYAIAYP 120 L+THSD+DHIIG+GAFP+A IIAS+ +K + R I+E+I +FDD YY+ R Y +YP Sbjct: 61 LYTHSDYDHIIGHGAFPDATIIASKALNEKDGQEREKIIEQILSFDDSYYIDRDYTPSYP 120 Query: 121 VVDHIMERDGQEMVFGELRLTGYIAPGHTNDGLFTVVDSHGLFIAGDYLSDVEFPYIYDS 180 D ++ +DGQ + G L ++ PGHT+ G+ ++ S L IAGDYL D EFPY+Y S Sbjct: 121 AADIVISQDGQALAVGGTELKFFLTPGHTDCGIACIIPSLDLLIAGDYLCDTEFPYVYFS 180 Query: 181 STAYEATLDSVEQIIARHPVPLLIPGHGEAAESLLEIECRRVAGLGYIRSXXXXXXXXXX 240 ST Y TL+ +A H L++ GHG A S EI R + GY+ Sbjct: 181 STDYLLTLEKFADSLADHSFRLMMTGHGLPAYSNEEISSRIHSSAGYLAKLKEYVAEGKE 240 Query: 241 XXXXXXXXGCAFPRNMRKFHRSNQELLEREL 271 +PR M+ FH N EL+++E Sbjct: 241 AESYVLFEEYKYPRIMKDFHEGNIELMKKEF 271 >A3IAQ7.1 A3IAQ7_9BACI Putative uncharacterized protein Length = 270 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 108/270 (40%), Positives = 168/270 (62%), Gaps = 6/270 (2%) Query: 1 VLKWKRSEITLFQSELYETNSLVIESAEHVLVVDPCWLPREVAEIRQYVSGILGGKRLLL 60 +++++ IT+FQS LY T S +I++ E +++ DP WLP E+ EI+ +++ I G K+L + Sbjct: 1 MIQFQNHTITVFQSALYMTTSAIIQTNEAIIMTDPNWLPSEIQEIQDFINNIQGDKQLYI 60 Query: 61 LFTHSDFDHIIGYGAFPEAEIIASRGFTDKSLEARATILEEIRTFDDDYYLRRPYAIAYP 120 ++THSDFDHIIG GAFPEA++IAS+ F D S +A + ++++ FD YYL R Y+ YP Sbjct: 61 IYTHSDFDHIIGSGAFPEAKVIASKRFDDNSNKAES--IQKVHQFDQKYYLHRSYSPVYP 118 Query: 121 VVDHIMERDGQEMVFGELRLTGYIAPGHTNDGLFTVVDSHGLFIAGDYLSDVEFPYIYDS 180 VD ++ DG + + +T Y APGHT+DGLFTV++ +GLF++GDYLSDVEFP+I+ S Sbjct: 119 TVDIVVSEDGYTVELDSITMTFYQAPGHTDDGLFTVIEPYGLFLSGDYLSDVEFPFIFSS 178 Query: 181 STAYEATLDSVEQIIARHPVPLLIPGHGEAAESLLEIECRRVAGLGYIRSXXXXXXXXXX 240 Y T++ E+I+ H + IPGHG A ++ EI+ R + Y+ Sbjct: 179 YKDYVNTMNKAEKILHNHAITTHIPGHGMATQNQQEIQKRIDSSRYYLTQLPQDKGELEN 238 Query: 241 XXXXXXXXGCAFPRNMRKFHRSNQELLERE 270 +F M+ H N+E++ +E Sbjct: 239 YLRSE----YSFFEGMKSIHTDNKEMICKE 264 >Q8ETF1.1 Q8ETF1_OCEIH Hypothetical conserved protein Length = 264 Score = 214 bits (545), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 104/220 (47%), Positives = 145/220 (65%), Gaps = 2/220 (0%) Query: 1 VLKWKRSEITLFQSELYETNSLVIESAEHVLVVDPCWLPREVAEIRQYVSGILGGKRLLL 60 ++++K + +T+FQS LY+T + VI + E +++ DP WLP EV EIR YVS +G K+L + Sbjct: 1 MIQFKDNNLTVFQSALYKTTTAVIHTEEALIMTDPNWLPEEVQEIRNYVSQHIGNKKLYI 60 Query: 61 LFTHSDFDHIIGYGAFPEAEIIASRGFTDKSLEARATILEEIRTFDDDYYLRRPYAIAYP 120 ++THSDFDHIIG AFPEA +IAS F+ + + + I+++I FD YYL R Y YP Sbjct: 61 IYTHSDFDHIIGASAFPEAYVIASEEFS--ANKHKQEIMKDIEEFDQKYYLYRNYTPEYP 118 Query: 121 VVDHIMERDGQEMVFGELRLTGYIAPGHTNDGLFTVVDSHGLFIAGDYLSDVEFPYIYDS 180 VD + DGQ + GE+ L Y APGHT+DG+FTVVD +G+F++GDYLSDVEFP+I+ S Sbjct: 119 NVDVHVVNDGQTLQIGEVTLHFYKAPGHTSDGIFTVVDPYGIFLSGDYLSDVEFPFIFSS 178 Query: 181 STAYEATLDSVEQIIARHPVPLLIPGHGEAAESLLEIECR 220 Y T+D QI H + +PGHG E+ R Sbjct: 179 YRDYVRTVDKAMQIFKEHSIYYHVPGHGTTTVDYQEMAKR 218 >B1YJM6.1 B1YJM6_EXIS2 Beta-lactamase domain protein Length = 269 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 130/228 (57%), Gaps = 5/228 (2%) Query: 1 VLKWKRSEITLFQSELYETNSLVIESAEHVLVVDPCWLPREVAEIRQYVSGILGGKRLLL 60 +++ K + ++QS L +T S +IE+ + ++VVDP WLP E+A IR+ V I + L + Sbjct: 1 MIQMKMPGVMVYQSTLMKTTSTLIETPDCLIVVDPGWLPDEIATIRRDVEIIRHDRPLYI 60 Query: 61 LFTHSDFDHIIGYGAFPEAEIIASRGFTDKSLEARATILEEIRTFDDDYYLRRPYAIAYP 120 ++TH+ FDHI+G AF +A IASR F D R LEE++ F+D+YY+ P + +P Sbjct: 61 VYTHAHFDHILGAYAFKDAIAIASRRFVDVD---RTAALEEVQNFNDEYYIESP--VLFP 115 Query: 121 VVDHIMERDGQEMVFGELRLTGYIAPGHTNDGLFTVVDSHGLFIAGDYLSDVEFPYIYDS 180 + H++E + G+ +L ++ PGH + L VV L + GDY SDVE P I Sbjct: 116 DITHVIEESETTLTIGKTKLIFFLTPGHESTHLSFVVMPLHLLVCGDYASDVEIPLIEHD 175 Query: 181 STAYEATLDSVEQIIARHPVPLLIPGHGEAAESLLEIECRRVAGLGYI 228 S+ Y TL+ +E I + V LLIPGHG + E+ R YI Sbjct: 176 SSEYLTTLELLESFIYEYEVKLLIPGHGHICDVRTEMIERLHLSYDYI 223 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.140 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,573,769,082 Number of extensions: 61128891 Number of successful extensions: 135373 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 135399 Number of HSP's successfully gapped: 10 Length of query: 298 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 163 Effective length of database: 1,788,859,178 Effective search space: 291584046014 Effective search space used: 291584046014 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)