BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0564.0051.p
         (148 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D978.1 B1D978_9BACL Putative uncharacterized protein                123   5e-27
C0Z959.1 C0Z959_BREBN Putative uncharacterized protein                 65   2e-09

>B1D978.1 B1D978_9BACL Putative uncharacterized protein
          Length = 144

 Score =  123 bits (309), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/146 (47%), Positives = 90/146 (61%), Gaps = 11/146 (7%)

Query: 8   VKLSQWDALLVESLRS-LGWSDEELLRRVEAG-ELPVDESEYHFDYTQLTQLAGEQPEVF 65
           VKLSQWDALLVESLR   GWSD+E++ +V+AG +LP D+S + F+Y  L   A ++PE F
Sbjct: 5   VKLSQWDALLVESLRKGHGWSDDEIIAKVKAGADLPTDDSIFQFNYGDLAAFAEKEPETF 64

Query: 66  RQAVIQGYQIKYNTIRGIRSWIFVXXXXXXXXXXXXXXXXXXVTLTEPEHKRLESVLSFG 125
             AV  GYQIKYNT+RG+RSWI+V                    LT  + +R+++ LSFG
Sbjct: 65  EAAVRSGYQIKYNTVRGLRSWIWVAFGDEPQLELEAGQEAVTAQLTPEQLERVKTALSFG 124

Query: 126 WRI---TGGPSGTEGTGVYRIEPIRR 148
           W I    G P      G YRIEPI+R
Sbjct: 125 WSIQPVDGVP------GSYRIEPIQR 144


>C0Z959.1 C0Z959_BREBN Putative uncharacterized protein
          Length = 148

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 5  LSKVKLSQWDALLVESLRSLGWSDEELLRRVEAGE-LPVDESE-YHFDYTQLTQLAGEQP 62
          +S VKLSQW+ +L+E+ R+ G+ DEE++ ++  G+  P  + E   +DYT L +L+   P
Sbjct: 1  MSTVKLSQWETMLLEAARAHGFVDEEIIHKLRTGDPAPFSDVEGGKYDYTPLFELSKNDP 60

Query: 63 EVFRQAVIQGYQIKYNTIRGIR 84
               A+ +GYQIK+ T  GI+
Sbjct: 61 LTLEAAIREGYQIKFTTFNGIK 82


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 797,805,310
Number of extensions: 25724200
Number of successful extensions: 64292
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 64290
Number of HSP's successfully gapped: 2
Length of query: 148
Length of database: 3,060,696,203
Length adjustment: 110
Effective length of query: 38
Effective length of database: 2,024,384,553
Effective search space: 76926613014
Effective search space used: 76926613014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)