BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0050.p (302 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D979.1 B1D979_9BACL ABC transporter related 442 e-122 B9IS65.1 B9IS65_BACCQ Oligopeptide ABC transporter, ATP-binding ... 370 e-101 A0RAF0.1 A0RAF0_BACAH Oligopeptide ABC transporter, ATP-binding ... 370 e-101 B3ZML0.1 B3ZML0_BACCE Oligopeptide ABC transporter, ATP-binding ... 370 e-100 Q63F97.1 Q63F97_BACCZ Oligopeptide ABC transporter, ATP-binding ... 370 e-100 >B1D979.1 B1D979_9BACL ABC transporter related Length = 301 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 222/300 (74%), Positives = 246/300 (82%), Gaps = 4/300 (1%) Query: 3 DSKVLVDVNNLQKHFSKGKDLRGRDTAVLKAVDGVSFQIRQGETFGLVGESGSGKSTVGR 62 D KVLVDV L+KHF K +D GR + VLKAVDGVSF+I +GETFGLVGESGSGKSTVGR Sbjct: 4 DKKVLVDVQQLKKHFVKSRDAWGRTSEVLKAVDGVSFRINKGETFGLVGESGSGKSTVGR 63 Query: 63 CLLRLYDYTGGEVFFDGQPLGKLGEKGLKPFRRRIQSIFQDPYSSLNPSLNVLELISEPM 122 +LRLYDYT G V FDGQ + KLGEK LKPFRRRIQSIFQDPYSSLNP ++VL+LI EPM Sbjct: 64 SILRLYDYTDGTVKFDGQDISKLGEKALKPFRRRIQSIFQDPYSSLNPGMSVLDLIGEPM 123 Query: 123 KIHGIYQGXXXXXXXXXXXXX-VGLKREHLYRFPHEFSGGQRQRISIARALSVRPEFVVC 181 IHG+Y+ VGLKREHLYR+PHEFSGGQRQRISIARALSVRP+FVVC Sbjct: 124 NIHGLYKNVEERKEVIASLLERVGLKREHLYRYPHEFSGGQRQRISIARALSVRPDFVVC 183 Query: 182 DEPISALDVSVQAQVVNMLEDLQSEFGLTYLFIAHDLSMVRHISDRIGVMYAGRLVEVAD 241 DEPISALDVSVQAQVVNMLEDLQ+EFGLTYLFIAHDLSMVRHISDRIGVMY GRLVE+AD Sbjct: 184 DEPISALDVSVQAQVVNMLEDLQAEFGLTYLFIAHDLSMVRHISDRIGVMYHGRLVEIAD 243 Query: 242 SDELYDNPLHPYTKALLSSILETDPRKGSRRIRLEGYSGGSGADARAVLREVSPGHYVAV 301 SDELY+NPLHPYTKALLS+I DPR R+ Y+ + + AVLREV PGH+VA+ Sbjct: 244 SDELYENPLHPYTKALLSAIPIPDPRAVVERVI---YTPDAATEEAAVLREVRPGHWVAL 300 >B9IS65.1 B9IS65_BACCQ Oligopeptide ABC transporter, ATP-binding protein Length = 323 Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust. Identities = 180/272 (66%), Positives = 214/272 (78%), Gaps = 1/272 (0%) Query: 7 LVDVNNLQKHFSKGKDLRGRDTAVLKAVDGVSFQIRQGETFGLVGESGSGKSTVGRCLLR 66 L++V NL+K+F K L GR T LKAVD +SF I++GETFGLVGESG GKST GR ++R Sbjct: 6 LIEVRNLKKYFPIKKGLFGRKTEQLKAVDDLSFTIKKGETFGLVGESGCGKSTTGRSIIR 65 Query: 67 LYDYTGGEVFFDGQPLGKLGEKGLKPFRRRIQSIFQDPYSSLNPSLNVLELISEPMKIHG 126 L+D T G V FDG+ + L E LK +R+R+Q IFQDPY+SLNPS+NV ++ISEPM IHG Sbjct: 66 LHDVTSGNVLFDGKDIASLKESELKEYRKRMQIIFQDPYASLNPSMNVFQIISEPMNIHG 125 Query: 127 IYQGXXXXXXXXXXXXXVGLKREHLYRFPHEFSGGQRQRISIARALSVRPEFVVCDEPIS 186 Y+ VGLK EHLYR+PHEFSGGQRQRISIARALSV+P+F++CDEPIS Sbjct: 126 SYEKEEQKEIILDLLKKVGLKEEHLYRYPHEFSGGQRQRISIARALSVKPDFILCDEPIS 185 Query: 187 ALDVSVQAQVVNMLEDLQSEFGLTYLFIAHDLSMVRHISDRIGVMYAGRLVEVADSDELY 246 ALDVSVQAQVVNML+D+Q E G+TYLFIAHDLSMVRHISDRIGVMY G +VE+ADS++LY Sbjct: 186 ALDVSVQAQVVNMLQDIQEETGVTYLFIAHDLSMVRHISDRIGVMYLGNIVEIADSEDLY 245 Query: 247 DNPLHPYTKALLSSILETDPRK-GSRRIRLEG 277 P HPYT+ALLSS+ E DP K G RI LEG Sbjct: 246 TKPAHPYTQALLSSMPEPDPTKTGKNRIILEG 277 >A0RAF0.1 A0RAF0_BACAH Oligopeptide ABC transporter, ATP-binding protein Length = 326 Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust. Identities = 189/315 (60%), Positives = 226/315 (71%), Gaps = 20/315 (6%) Query: 7 LVDVNNLQKHFSKGKDLRGRDTAVLKAVDGVSFQIRQGETFGLVGESGSGKSTVGRCLLR 66 L++V NL+K+F K L GR T LKAVD +SF I++GETFGLVGESG GKST GR ++R Sbjct: 9 LIEVRNLKKYFPIKKGLFGRKTEQLKAVDDLSFTIKKGETFGLVGESGCGKSTTGRSIIR 68 Query: 67 LYDYTGGEVFFDGQPLGKLGEKGLKPFRRRIQSIFQDPYSSLNPSLNVLELISEPMKIHG 126 L+D T G V FDG+ + L E LK +R+R+Q IFQDPY+SLNPS+NV ++ISEPM IHG Sbjct: 69 LHDVTSGNVLFDGKDIASLKESELKEYRKRMQIIFQDPYASLNPSMNVFQIISEPMNIHG 128 Query: 127 IYQGXXXXXXXXXXXXXVGLKREHLYRFPHEFSGGQRQRISIARALSVRPEFVVCDEPIS 186 Y+ VGLK EHLYR+PHEFSGGQRQRISIARALSV+P+F++CDEPIS Sbjct: 129 SYEKEEQKEIILDLLKKVGLKEEHLYRYPHEFSGGQRQRISIARALSVKPDFILCDEPIS 188 Query: 187 ALDVSVQAQVVNMLEDLQSEFGLTYLFIAHDLSMVRHISDRIGVMYAGRLVEVADSDELY 246 ALDVSVQAQVVNML+D+Q E G+TYLFIAHDLSMVRHISDRIGVMY G +VE+ADS++LY Sbjct: 189 ALDVSVQAQVVNMLQDIQEETGVTYLFIAHDLSMVRHISDRIGVMYLGNIVEIADSEDLY 248 Query: 247 DNPLHPYTKALLSSILETDPRK-GSRRIRLEG-----YSGGSGADARAVLR--------- 291 P HPYT+ALLSS+ E DP K G RI LEG S SG R + Sbjct: 249 TKPAHPYTQALLSSMPEPDPTKTGKDRIILEGEVPSPLSSPSGCKFRTRCKFATEKCAQE 308 Query: 292 -----EVSPGHYVAV 301 E++ GH VA Sbjct: 309 VPKMVEIAKGHEVAC 323 >B3ZML0.1 B3ZML0_BACCE Oligopeptide ABC transporter, ATP-binding protein Length = 323 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 180/272 (66%), Positives = 214/272 (78%), Gaps = 1/272 (0%) Query: 7 LVDVNNLQKHFSKGKDLRGRDTAVLKAVDGVSFQIRQGETFGLVGESGSGKSTVGRCLLR 66 L++V NL+K+F K L GR T LKAVD +SF I++GETFGLVGESG GKST GR ++R Sbjct: 6 LIEVRNLKKYFPIKKGLFGRKTEQLKAVDDLSFTIKKGETFGLVGESGCGKSTTGRSIIR 65 Query: 67 LYDYTGGEVFFDGQPLGKLGEKGLKPFRRRIQSIFQDPYSSLNPSLNVLELISEPMKIHG 126 L+D T G V FDG+ + L E LK +R+R+Q IFQDPY+SLNPS+NV ++ISEPM IHG Sbjct: 66 LHDVTSGNVLFDGKDIASLKESELKEYRKRMQIIFQDPYASLNPSMNVFQIISEPMNIHG 125 Query: 127 IYQGXXXXXXXXXXXXXVGLKREHLYRFPHEFSGGQRQRISIARALSVRPEFVVCDEPIS 186 Y+ VGLK EHLYR+PHEFSGGQRQRISIARALSV+P+F++CDEPIS Sbjct: 126 SYEKEEQKEIILDLLKKVGLKEEHLYRYPHEFSGGQRQRISIARALSVKPDFILCDEPIS 185 Query: 187 ALDVSVQAQVVNMLEDLQSEFGLTYLFIAHDLSMVRHISDRIGVMYAGRLVEVADSDELY 246 ALDVSVQAQVVNML+D+Q E G+TYLFIAHDLSMVRHISDRIGVMY G +VE+ADS++LY Sbjct: 186 ALDVSVQAQVVNMLQDIQEETGVTYLFIAHDLSMVRHISDRIGVMYLGNIVEIADSEDLY 245 Query: 247 DNPLHPYTKALLSSILETDPRK-GSRRIRLEG 277 P HPYT+ALLSS+ E DP K G RI LEG Sbjct: 246 TKPAHPYTQALLSSMPEPDPTKTGKDRIILEG 277 >Q63F97.1 Q63F97_BACCZ Oligopeptide ABC transporter, ATP-binding protein Length = 326 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 180/272 (66%), Positives = 214/272 (78%), Gaps = 1/272 (0%) Query: 7 LVDVNNLQKHFSKGKDLRGRDTAVLKAVDGVSFQIRQGETFGLVGESGSGKSTVGRCLLR 66 L++V NL+K+F K L GR T LKAVD +SF I++GETFGLVGESG GKST GR ++R Sbjct: 9 LIEVRNLKKYFPIKKGLFGRKTEQLKAVDDLSFTIKKGETFGLVGESGCGKSTTGRSIIR 68 Query: 67 LYDYTGGEVFFDGQPLGKLGEKGLKPFRRRIQSIFQDPYSSLNPSLNVLELISEPMKIHG 126 L+D T G V FDG+ + L E LK +R+R+Q IFQDPY+SLNPS+NV ++ISEPM IHG Sbjct: 69 LHDVTSGNVLFDGKDIASLKESELKEYRKRMQIIFQDPYASLNPSMNVFQIISEPMNIHG 128 Query: 127 IYQGXXXXXXXXXXXXXVGLKREHLYRFPHEFSGGQRQRISIARALSVRPEFVVCDEPIS 186 Y+ VGLK EHLYR+PHEFSGGQRQRISIARALSV+P+F++CDEPIS Sbjct: 129 SYEKEEQKEIILDLLKKVGLKEEHLYRYPHEFSGGQRQRISIARALSVKPDFILCDEPIS 188 Query: 187 ALDVSVQAQVVNMLEDLQSEFGLTYLFIAHDLSMVRHISDRIGVMYAGRLVEVADSDELY 246 ALDVSVQAQVVNML+D+Q E G+TYLFIAHDLSMVRHISDRIGVMY G +VE+ADS++LY Sbjct: 189 ALDVSVQAQVVNMLQDIQEETGVTYLFIAHDLSMVRHISDRIGVMYLGNIVEIADSEDLY 248 Query: 247 DNPLHPYTKALLSSILETDPRK-GSRRIRLEG 277 P HPYT+ALLSS+ E DP K G RI LEG Sbjct: 249 TKPAHPYTQALLSSMPEPDPTKTGKDRIILEG 280 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,722,171,834 Number of extensions: 69931403 Number of successful extensions: 475307 Number of sequences better than 1.0e-05: 66237 Number of HSP's gapped: 414617 Number of HSP's successfully gapped: 69889 Length of query: 302 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 167 Effective length of database: 1,788,859,178 Effective search space: 298739482726 Effective search space used: 298739482726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)