BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0048.p (281 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D981.1 B1D981_9BACL Binding-protein-dependent transport system... 388 e-106 Q63F99.1 Q63F99_BACCZ Oligopeptide ABC transporter, permease 307 5e-82 B9IS63.1 B9IS63_BACCQ Oligopeptide ABC transporter, permease 307 8e-82 Q73CR2.1 Q73CR2_BACC1 Oligopeptide ABC transporter, permease pro... 306 1e-81 B5V5E1.1 B5V5E1_BACCE Oligopeptide ABC transporter, permease pro... 306 1e-81 >B1D981.1 B1D981_9BACL Binding-protein-dependent transport systems inner membrane component Length = 281 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 187/281 (66%), Positives = 224/281 (79%) Query: 1 MNRSKWKNVKDELFANGLGVAAVLILAVFTLGAVFAFLSGYDPNAMHAMARLTPPGAGHW 60 MNR+KW+N EL + +G+ A+ IL +F LGA+FAFLS DPNA+ A+ RL P + HW Sbjct: 1 MNRTKWRNAGLELVRSKMGIVAIAILVIFILGAIFAFLSPKDPNALDALQRLKSPSSAHW 60 Query: 61 FGTDDYGRDYLARALYGGRISLLVGFASMIVATGIGVTIGVLSGYFGGWLDNLLMRMVDX 120 FGTDDYGRDY ARALYGGR+SL+VGF++M++AT IG +GV+SGYFGGW+DNLLMR+++ Sbjct: 61 FGTDDYGRDYFARALYGGRVSLMVGFSAMVLATTIGTIVGVVSGYFGGWIDNLLMRLLEV 120 Query: 121 XXXXXXXXXXXXXXXXXXXXXGNIIIIIALLMWMNVARVVRAETMTIKEREYVLYAKASG 180 +I+ II LLMWMN++R++RAETMT+ EREYVLYAKASG Sbjct: 121 ILSIPTFLLMLLLSVFLKPNLTSIVFIIGLLMWMNMSRIIRAETMTLLEREYVLYAKASG 180 Query: 181 QSASGIIWRHILPGLVPVIIVGATNNIASAIMMESSLSFLGFGVQPPDATWGSMLNSAQG 240 Q+ GII RHI P LVPVIIV ATNN+ASAIMMES+LSFLGFGVQ P+ATWGSMLN+AQG Sbjct: 181 QNHLGIIIRHIFPSLVPVIIVAATNNVASAIMMESTLSFLGFGVQAPNATWGSMLNNAQG 240 Query: 241 YIAQAPYLALFPGLLILLTVLSFNVLGDILRVGFEPKLMRR 281 YIAQAPYLALFPGL ILLTVLSFN+LGDILRVGFEPKL +R Sbjct: 241 YIAQAPYLALFPGLFILLTVLSFNILGDILRVGFEPKLGKR 281 >Q63F99.1 Q63F99_BACCZ Oligopeptide ABC transporter, permease Length = 283 Score = 307 bits (787), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 149/277 (53%), Positives = 192/277 (69%) Query: 1 MNRSKWKNVKDELFANGLGVAAVLILAVFTLGAVFAFLSGYDPNAMHAMARLTPPGAGHW 60 MN +++ +K N V V+ILAV T+ ++FAF+S YDP+ M RL P H Sbjct: 1 MNNRRFQTIKHSFTKNQFVVMGVIILAVLTVASIFAFVSPYDPSKMSIPDRLQEPSVSHP 60 Query: 61 FGTDDYGRDYLARALYGGRISLLVGFASMIVATGIGVTIGVLSGYFGGWLDNLLMRMVDX 120 FGTDDYGRDYL RALYGGR+SL VGF +M+V+ IG +G +SGYFGG LDN LMR+V+ Sbjct: 61 FGTDDYGRDYLTRALYGGRVSLAVGFLAMVVSVTIGTAVGTISGYFGGKLDNFLMRVVEV 120 Query: 121 XXXXXXXXXXXXXXXXXXXXXGNIIIIIALLMWMNVARVVRAETMTIKEREYVLYAKASG 180 +++II LL WM+ AR+VRAET+++KEREYVLYAK SG Sbjct: 121 LMSIPSFFLMLLLNAYLKPGITTLVLIIGLLTWMDTARIVRAETLSVKEREYVLYAKVSG 180 Query: 181 QSASGIIWRHILPGLVPVIIVGATNNIASAIMMESSLSFLGFGVQPPDATWGSMLNSAQG 240 Q + II RHI+P ++ II+ AT IA++I+MESSLSFLG G++ PD++WGSMLN+AQG Sbjct: 181 QKSLAIIVRHIIPNILSTIIIAATLTIATSILMESSLSFLGLGIREPDSSWGSMLNNAQG 240 Query: 241 YIAQAPYLALFPGLLILLTVLSFNVLGDILRVGFEPK 277 YI +A YL LFPG LILLTVLSFNV+G+ L+ F PK Sbjct: 241 YIGEAWYLTLFPGFLILLTVLSFNVIGEALKKAFAPK 277 >B9IS63.1 B9IS63_BACCQ Oligopeptide ABC transporter, permease Length = 283 Score = 307 bits (786), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 148/277 (53%), Positives = 192/277 (69%) Query: 1 MNRSKWKNVKDELFANGLGVAAVLILAVFTLGAVFAFLSGYDPNAMHAMARLTPPGAGHW 60 MN +++ +K N + V+ILAV T+ ++FAF+S YDP+ M RL P H Sbjct: 1 MNHRRFQTIKSSFTKNKFVLMGVIILAVLTVASIFAFVSPYDPSKMSIPDRLQEPSVSHP 60 Query: 61 FGTDDYGRDYLARALYGGRISLLVGFASMIVATGIGVTIGVLSGYFGGWLDNLLMRMVDX 120 FGTDDYGRDYL RALYGGR+SL VGF +M+V+ IG +G +SGYFGG LDN LMR+V+ Sbjct: 61 FGTDDYGRDYLTRALYGGRVSLAVGFLAMVVSVTIGTAVGTISGYFGGKLDNFLMRVVEV 120 Query: 121 XXXXXXXXXXXXXXXXXXXXXGNIIIIIALLMWMNVARVVRAETMTIKEREYVLYAKASG 180 +++II LL WM+ AR+VRAET+++KEREYVLYAK SG Sbjct: 121 LMSIPSFFLMLLLNAYLKPGITTLVLIIGLLTWMDTARIVRAETLSVKEREYVLYAKVSG 180 Query: 181 QSASGIIWRHILPGLVPVIIVGATNNIASAIMMESSLSFLGFGVQPPDATWGSMLNSAQG 240 Q + II RHI+P ++ II+ AT IA++I+MESSLSFLG G++ PD++WGSMLN+AQG Sbjct: 181 QKSLAIIVRHIIPNILSTIIIAATLTIATSILMESSLSFLGLGIREPDSSWGSMLNNAQG 240 Query: 241 YIAQAPYLALFPGLLILLTVLSFNVLGDILRVGFEPK 277 YI +A YL LFPG LILLTVLSFNV+G+ L+ F PK Sbjct: 241 YIGEAWYLTLFPGFLILLTVLSFNVIGEALKKAFAPK 277 >Q73CR2.1 Q73CR2_BACC1 Oligopeptide ABC transporter, permease protein Length = 283 Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 148/277 (53%), Positives = 192/277 (69%) Query: 1 MNRSKWKNVKDELFANGLGVAAVLILAVFTLGAVFAFLSGYDPNAMHAMARLTPPGAGHW 60 MN +++ +K N + V+ILAV T+ ++FAF+S YDP+ M RL P H Sbjct: 1 MNNRRFQTIKSSFTKNKFVLMGVIILAVLTIASIFAFVSPYDPSKMSIPDRLQEPSMSHP 60 Query: 61 FGTDDYGRDYLARALYGGRISLLVGFASMIVATGIGVTIGVLSGYFGGWLDNLLMRMVDX 120 FGTDDYGRDYL RALYGGR+SL VGF +M+V+ IG +G +SGYFGG LDN LMR+V+ Sbjct: 61 FGTDDYGRDYLTRALYGGRVSLAVGFLAMVVSITIGTAVGTISGYFGGKLDNFLMRIVEV 120 Query: 121 XXXXXXXXXXXXXXXXXXXXXGNIIIIIALLMWMNVARVVRAETMTIKEREYVLYAKASG 180 +++II LL WM+ AR+VRAET+++KEREYVLYAK SG Sbjct: 121 LMSIPSFFLMLLLNAYLKPGITTLVLIIGLLTWMDTARIVRAETLSVKEREYVLYAKVSG 180 Query: 181 QSASGIIWRHILPGLVPVIIVGATNNIASAIMMESSLSFLGFGVQPPDATWGSMLNSAQG 240 Q + II RHI+P ++ II+ AT IA++I+MESSLSFLG G++ PD++WGSMLN+AQG Sbjct: 181 QKSLAIIVRHIIPNILSTIIIAATLTIATSILMESSLSFLGLGIREPDSSWGSMLNNAQG 240 Query: 241 YIAQAPYLALFPGLLILLTVLSFNVLGDILRVGFEPK 277 YI +A YL LFPG LILLTVLSFNV+G+ L+ F PK Sbjct: 241 YIGEAWYLTLFPGFLILLTVLSFNVIGEALKKAFAPK 277 >B5V5E1.1 B5V5E1_BACCE Oligopeptide ABC transporter, permease protein Length = 283 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 148/277 (53%), Positives = 192/277 (69%) Query: 1 MNRSKWKNVKDELFANGLGVAAVLILAVFTLGAVFAFLSGYDPNAMHAMARLTPPGAGHW 60 MN +++ +K N + V+ILAV T+ ++FAF+S YDP+ M RL P H Sbjct: 1 MNNRRFQTIKSSFTKNKFVLMGVIILAVLTIASIFAFVSPYDPSKMSIPDRLQEPSMSHP 60 Query: 61 FGTDDYGRDYLARALYGGRISLLVGFASMIVATGIGVTIGVLSGYFGGWLDNLLMRMVDX 120 FGTDDYGRDYL RALYGGR+SL VGF +M+V+ IG +G +SGYFGG LDN LMR+V+ Sbjct: 61 FGTDDYGRDYLTRALYGGRVSLAVGFLAMVVSVTIGTAVGTISGYFGGKLDNFLMRVVEV 120 Query: 121 XXXXXXXXXXXXXXXXXXXXXGNIIIIIALLMWMNVARVVRAETMTIKEREYVLYAKASG 180 +++II LL WM+ AR+VRAET+++KEREYVLYAK SG Sbjct: 121 LMSIPSFFLMLLLNAYLKPGITTLVLIIGLLTWMDTARIVRAETLSVKEREYVLYAKVSG 180 Query: 181 QSASGIIWRHILPGLVPVIIVGATNNIASAIMMESSLSFLGFGVQPPDATWGSMLNSAQG 240 Q + II RHI+P ++ II+ AT IA++I+MESSLSFLG G++ PD++WGSMLN+AQG Sbjct: 181 QKSLTIIVRHIIPNILSTIIIAATLTIATSILMESSLSFLGLGIREPDSSWGSMLNNAQG 240 Query: 241 YIAQAPYLALFPGLLILLTVLSFNVLGDILRVGFEPK 277 YI +A YL LFPG LILLTVLSFNV+G+ L+ F PK Sbjct: 241 YIGEAWYLTLFPGFLILLTVLSFNVIGEALKKAFAPK 277 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.142 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,555,827,897 Number of extensions: 60274896 Number of successful extensions: 279175 Number of sequences better than 1.0e-05: 5913 Number of HSP's gapped: 271267 Number of HSP's successfully gapped: 6175 Length of query: 281 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 147 Effective length of database: 1,798,280,193 Effective search space: 264347188371 Effective search space used: 264347188371 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)