BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0047.p (308 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D982.1 B1D982_9BACL Binding-protein-dependent transport system... 491 e-137 C2V7W5.1 C2V7W5_BACCE Oligopeptide ABC transporter, permease 399 e-109 C3HWF8.1 C3HWF8_BACTU Oligopeptide ABC transporter, permease 397 e-109 C3IFG6.1 C3IFG6_BACTU Oligopeptide ABC transporter, permease 397 e-109 B7IJ55.1 B7IJ55_BACC2 Oligopeptide ABC transporter, permease pro... 397 e-109 >B1D982.1 B1D982_9BACL Binding-protein-dependent transport systems inner membrane component Length = 316 Score = 491 bits (1263), Expect = e-137, Method: Compositional matrix adjust. Identities = 236/305 (77%), Positives = 261/305 (85%) Query: 1 LLQTLPMLFFVSVVCFTMIKLAPGDPVLSFVTPNMHADDIERIRHNLGLDKPAYIQYFIW 60 LLQT+P+L FVS+ CF +IKLAPGDPVLSFVTPNMH +DIERIRHNLGLDKPAYIQY +W Sbjct: 9 LLQTIPLLLFVSIACFALIKLAPGDPVLSFVTPNMHPEDIERIRHNLGLDKPAYIQYLLW 68 Query: 61 LKEMAKGNFGYSLVNHQPVLGQILERLPATAGLMGSXXXXXXXXXXXXXXXXXXNRNRWA 120 +KE+ +GN GYSLVNHQPV+ QIL+RLPATAGLM S NRNRW Sbjct: 69 IKELFQGNLGYSLVNHQPVMDQILDRLPATAGLMASAIALSVLIAIPLGLTAGANRNRWQ 128 Query: 121 DKLINFISYVGISIPLFWLAILLMYLFAIKLHLLPSMGMRTIGVESAADVLKHGILPCSV 180 DK+IN ISYVGIS+PLF+LAILL+YLFAI+LH LP MGMRTIGV SA DV+KHGILPC+V Sbjct: 129 DKIINLISYVGISVPLFYLAILLIYLFAIELHWLPIMGMRTIGVHSAWDVVKHGILPCAV 188 Query: 181 LAFGFLAGYVRYIRSSTIGQLKEEYVQIQYAFGSKKSTILFRHVMKHVLLPVITLLGMSM 240 LAFGFL+ YVRYIRSSTIGQLKE+YVQIQYAFG+ + +LFRHVMKHVLLPVITLLGMSM Sbjct: 189 LAFGFLSVYVRYIRSSTIGQLKEDYVQIQYAFGASRRQVLFRHVMKHVLLPVITLLGMSM 248 Query: 241 GDLVAGAIVTETVFSWPGIGSLGMTAVKGMDYPVIMGITLFSSLMLIFGNMAADILYSFV 300 DLV GAIVTETVFSWPGIGSLGMTAVKGMDYPVIMGITLFS+L LI GN+ ADILY F Sbjct: 249 ADLVTGAIVTETVFSWPGIGSLGMTAVKGMDYPVIMGITLFSALFLILGNLLADILYGFA 308 Query: 301 DPRIK 305 DPRIK Sbjct: 309 DPRIK 313 >C2V7W5.1 C2V7W5_BACCE Oligopeptide ABC transporter, permease Length = 316 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 186/308 (60%), Positives = 241/308 (78%) Query: 1 LLQTLPMLFFVSVVCFTMIKLAPGDPVLSFVTPNMHADDIERIRHNLGLDKPAYIQYFIW 60 LL +P+LF +S++ F +IKLAPGDPV +FVTPNM D+ERIR +LGLD+P Y+QYF+W Sbjct: 9 LLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQPIYVQYFLW 68 Query: 61 LKEMAKGNFGYSLVNHQPVLGQILERLPATAGLMGSXXXXXXXXXXXXXXXXXXNRNRWA 120 LK + GNFGYSL NH+PVL I+ERLPAT GLMGS +N + Sbjct: 69 LKNILTGNFGYSLQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLFTGVKKNSYF 128 Query: 121 DKLINFISYVGISIPLFWLAILLMYLFAIKLHLLPSMGMRTIGVESAADVLKHGILPCSV 180 D++INFISYVGIS+P+FW A+LL+YLF++KL+LLPSMGMRT+G +S D+++HGILPC V Sbjct: 129 DRIINFISYVGISMPVFWFALLLVYLFSLKLNLLPSMGMRTVGKDSVWDIVQHGILPCMV 188 Query: 181 LAFGFLAGYVRYIRSSTIGQLKEEYVQIQYAFGSKKSTILFRHVMKHVLLPVITLLGMSM 240 LAF ++ Y+RYIRSSTI QL+EEYVQIQYA+G+ K T+LF HV+++VL+P+IT+ G+S+ Sbjct: 189 LAFQNVSVYMRYIRSSTIQQLEEEYVQIQYAYGASKKTVLFNHVLRNVLIPIITIFGLSI 248 Query: 241 GDLVAGAIVTETVFSWPGIGSLGMTAVKGMDYPVIMGITLFSSLMLIFGNMAADILYSFV 300 LV GA +TETVFSWPG+GSLG+ A+ DYP+IM ITL SS MLI GN+ ADILY V Sbjct: 249 PSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIADILYGVV 308 Query: 301 DPRIKLKG 308 DPRI+++G Sbjct: 309 DPRIRMRG 316 >C3HWF8.1 C3HWF8_BACTU Oligopeptide ABC transporter, permease Length = 316 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 185/308 (60%), Positives = 240/308 (77%) Query: 1 LLQTLPMLFFVSVVCFTMIKLAPGDPVLSFVTPNMHADDIERIRHNLGLDKPAYIQYFIW 60 LL +P+LF +S++ F +IKLAPGDPV +FVTPNM D+ERIR +LGLD+P Y+QYF+W Sbjct: 9 LLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSQIDVERIRKSLGLDQPIYVQYFLW 68 Query: 61 LKEMAKGNFGYSLVNHQPVLGQILERLPATAGLMGSXXXXXXXXXXXXXXXXXXNRNRWA 120 LK + GNFGYSL NH+PVL I ERLPAT GLMGS +N + Sbjct: 69 LKNILTGNFGYSLQNHRPVLDLIAERLPATIGLMGSSLLVSFVIAIPLGLFTGVKKNSFF 128 Query: 121 DKLINFISYVGISIPLFWLAILLMYLFAIKLHLLPSMGMRTIGVESAADVLKHGILPCSV 180 D+++NFISYVGIS+P+FW A+LL+YLF++KL+LLPSMGMRT+G +S D+++HGILPC V Sbjct: 129 DRIVNFISYVGISMPVFWFALLLVYLFSLKLNLLPSMGMRTVGQDSVWDIVQHGILPCMV 188 Query: 181 LAFGFLAGYVRYIRSSTIGQLKEEYVQIQYAFGSKKSTILFRHVMKHVLLPVITLLGMSM 240 LAF ++ Y+RYIRSSTI QL+EEYVQIQYA+G+ K T+LF HV+++VL+P+IT+ G+S+ Sbjct: 189 LAFQNVSVYMRYIRSSTIQQLEEEYVQIQYAYGASKKTVLFNHVLRNVLIPIITIFGLSI 248 Query: 241 GDLVAGAIVTETVFSWPGIGSLGMTAVKGMDYPVIMGITLFSSLMLIFGNMAADILYSFV 300 LV GA +TETVFSWPG+GSLG+ A+ DYP+IM ITL SS MLI GN+ ADILY V Sbjct: 249 PSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIADILYGVV 308 Query: 301 DPRIKLKG 308 DPRI+++G Sbjct: 309 DPRIRMRG 316 >C3IFG6.1 C3IFG6_BACTU Oligopeptide ABC transporter, permease Length = 316 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 185/308 (60%), Positives = 240/308 (77%) Query: 1 LLQTLPMLFFVSVVCFTMIKLAPGDPVLSFVTPNMHADDIERIRHNLGLDKPAYIQYFIW 60 LL +P+LF +S++ F +IKLAPGDPV +FVTPNM D+ERIR +LGLD+P Y+QYF+W Sbjct: 9 LLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRESLGLDQPIYVQYFLW 68 Query: 61 LKEMAKGNFGYSLVNHQPVLGQILERLPATAGLMGSXXXXXXXXXXXXXXXXXXNRNRWA 120 LK + GNFGYSL NH+PVL I ERLPAT GLMGS +N + Sbjct: 69 LKNILTGNFGYSLQNHRPVLELITERLPATIGLMGSSLLVSFVIAIPLGLFTGVKKNSFF 128 Query: 121 DKLINFISYVGISIPLFWLAILLMYLFAIKLHLLPSMGMRTIGVESAADVLKHGILPCSV 180 D+++NFISYVGIS+P+FW A+LL+YLF++KL+LLPSMGMRT+G +S D+++HGILPC V Sbjct: 129 DRIVNFISYVGISMPVFWFALLLVYLFSLKLNLLPSMGMRTVGKDSVWDIVQHGILPCMV 188 Query: 181 LAFGFLAGYVRYIRSSTIGQLKEEYVQIQYAFGSKKSTILFRHVMKHVLLPVITLLGMSM 240 LAF ++ Y+RYIRSSTI QL+EEYVQIQYA+G+ K T+LF HV+++VL+P+IT+ G+S+ Sbjct: 189 LAFQNVSVYMRYIRSSTIQQLEEEYVQIQYAYGASKKTVLFNHVLRNVLIPIITIFGLSI 248 Query: 241 GDLVAGAIVTETVFSWPGIGSLGMTAVKGMDYPVIMGITLFSSLMLIFGNMAADILYSFV 300 LV GA +TETVFSWPG+GSLG+ A+ DYP+IM ITL SS MLI GN+ ADILY V Sbjct: 249 PSLVCGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIADILYGVV 308 Query: 301 DPRIKLKG 308 DPRI+++G Sbjct: 309 DPRIRMRG 316 >B7IJ55.1 B7IJ55_BACC2 Oligopeptide ABC transporter, permease protein Length = 316 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 185/308 (60%), Positives = 240/308 (77%) Query: 1 LLQTLPMLFFVSVVCFTMIKLAPGDPVLSFVTPNMHADDIERIRHNLGLDKPAYIQYFIW 60 LL +P+LF +S++ F +IKLAPGDPV +FVTPNM D+ERIR +LGLD+P Y+QYF+W Sbjct: 9 LLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRESLGLDQPIYVQYFLW 68 Query: 61 LKEMAKGNFGYSLVNHQPVLGQILERLPATAGLMGSXXXXXXXXXXXXXXXXXXNRNRWA 120 LK + GNFGYSL NH+PVL I ERLPAT GLMGS +N + Sbjct: 69 LKNILTGNFGYSLQNHRPVLELITERLPATIGLMGSSLLVSFVIAIPLGLFTGVKKNSFF 128 Query: 121 DKLINFISYVGISIPLFWLAILLMYLFAIKLHLLPSMGMRTIGVESAADVLKHGILPCSV 180 D+++NFISYVGIS+P+FW A+LL+YLF++KL+LLPSMGMRT+G +S D+++HGILPC V Sbjct: 129 DRIVNFISYVGISMPVFWFALLLVYLFSLKLNLLPSMGMRTVGKDSVWDIVQHGILPCMV 188 Query: 181 LAFGFLAGYVRYIRSSTIGQLKEEYVQIQYAFGSKKSTILFRHVMKHVLLPVITLLGMSM 240 LAF ++ Y+RYIRSSTI QL+EEYVQIQYA+G+ K T+LF HV+++VL+P+IT+ G+S+ Sbjct: 189 LAFQNVSVYMRYIRSSTIQQLEEEYVQIQYAYGASKKTVLFNHVLRNVLIPIITIFGLSI 248 Query: 241 GDLVAGAIVTETVFSWPGIGSLGMTAVKGMDYPVIMGITLFSSLMLIFGNMAADILYSFV 300 LV GA +TETVFSWPG+GSLG+ A+ DYP+IM ITL SS MLI GN+ ADILY V Sbjct: 249 PSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIADILYGVV 308 Query: 301 DPRIKLKG 308 DPRI+++G Sbjct: 309 DPRIRMRG 316 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.144 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,685,338,958 Number of extensions: 65865986 Number of successful extensions: 230986 Number of sequences better than 1.0e-05: 5972 Number of HSP's gapped: 217752 Number of HSP's successfully gapped: 6017 Length of query: 308 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 173 Effective length of database: 1,788,859,178 Effective search space: 309472637794 Effective search space used: 309472637794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)