BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0045.p (522 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D983.1 B1D983_9BACL Extracellular solute-binding protein family 5 796 0.0 B7HEY2.1 B7HEY2_BACC4 Oligopeptide ABC transporter, oligopeptide... 550 e-154 C2RJ46.1 C2RJ46_BACCE Extracellular solute-binding protein family 5 548 e-154 C2T9U3.1 C2T9U3_BACCE Extracellular solute-binding protein family 5 548 e-154 C3GX64.1 C3GX64_BACTU Extracellular solute-binding protein family 5 548 e-154 >B1D983.1 B1D983_9BACL Extracellular solute-binding protein family 5 Length = 538 Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/496 (77%), Positives = 434/496 (87%) Query: 27 AAGEGPKDGGSLIIGVAADPVVLNPNYAGDRVSLTIDQALYAPLFQVNNGKKTFYLADSL 86 AA + KDGG+LI+GV ADPVVLNP YAGDRVSLTIDQALYAPLFQVNNGKKTFYLADSL Sbjct: 43 AAADQAKDGGNLILGVQADPVVLNPIYAGDRVSLTIDQALYAPLFQVNNGKKTFYLADSL 102 Query: 87 TPSADNLTYTLKLKSGLTWHDGEKLTADDVVFTIEKILDEKQNSFLRANFLINDKPITAT 146 PSADNLTYTLKLKSGLTWHDG+ LTADDVVFT + ILDEKQNSF R N ++ KPI A Sbjct: 103 EPSADNLTYTLKLKSGLTWHDGQPLTADDVVFTFDTILDEKQNSFFRENLILGGKPIKAV 162 Query: 147 KVDDLTVEFKLPQVSPAFEATLVQVTPIPKHIFENEADIEKSTKNAAPVGSGPFKFKEYK 206 KVDD TVEF+LPQV+PAFEATLVQ+TPIPKHIFE EA+IEKSTKN PVGSG FKFKEYK Sbjct: 163 KVDDTTVEFQLPQVNPAFEATLVQLTPIPKHIFEGEANIEKSTKNNTPVGSGAFKFKEYK 222 Query: 207 AGEYLTLERFDNYFGGKPHLDSVTYRIAKDTNAANLALQNGEINVQYLDPKDVSTIQATN 266 GEY+TLERFDNYFGGKPHLDS+TYRIAKD NAANLALQNGEINV+YLDP+DVSTI++T Sbjct: 223 TGEYVTLERFDNYFGGKPHLDSITYRIAKDANAANLALQNGEINVKYLDPQDVSTIESTG 282 Query: 267 NFEILPYAEGRLSYLMFNANSDTGALAKKEVRQALSLALSRDEIIQTAYTSGEYADPAKS 326 NF+I Y+EGRL+YL+FN +SDTGAL KKEVRQA+S ALSRDE+IQT Y S EYADPAKS Sbjct: 283 NFDIQAYSEGRLAYLLFNEDSDTGALKKKEVRQAISYALSRDELIQTVYGSSEYADPAKS 342 Query: 327 FLTPDALYFTNDVPTYDNDPAKAKELLQSAGVSNLKLRFIVQSGNKAQEAISLYVQQKLK 386 F+TPD L+ TNDV +YDND KAKELL SAG SNLKLRFIV SGNKAQEA +LY+QQKLK Sbjct: 343 FVTPDGLFQTNDVTSYDNDVNKAKELLASAGESNLKLRFIVSSGNKAQEAAALYIQQKLK 402 Query: 387 AIGVDVELQSMDSSAWVQKFIDLKSTDYELALTGYIMGYDPDAYRILFTSGASSNYSHYA 446 A+G+ VELQSMD+SA+ QKF+DLKS DYEL+ GYIMGYDPDAYRIL+T+G++SNY+ Y+ Sbjct: 403 AVGITVELQSMDASAYGQKFVDLKSKDYELSYAGYIMGYDPDAYRILYTTGSNSNYARYS 462 Query: 447 NPEVDKLLNEGAGEADTAKRAEIYKKAQELVAQDAPIYPIAYTKTVVAVSKNYGGLEEAV 506 NPEVDKL +GAGEAD KR E Y++ Q+ +A DAPIYP+ YTKT+VA+ K +GGL EAV Sbjct: 463 NPEVDKLFEQGAGEADATKRGEAYQQLQKTIADDAPIYPVGYTKTIVAIDKRFGGLNEAV 522 Query: 507 LKPVVIFEDLSKIYQK 522 LKPVVIFED SK+Y K Sbjct: 523 LKPVVIFEDPSKLYMK 538 >B7HEY2.1 B7HEY2_BACC4 Oligopeptide ABC transporter, oligopeptide-binding protein Length = 528 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 263/491 (53%), Positives = 352/491 (71%), Gaps = 3/491 (0%) Query: 32 PKDGGSLIIGVAADPVVLNPNYAGDRVSLTIDQALYAPLFQVNNGKKTFYLADSLTPSAD 91 PKDGG+L IGV+ +P +NP YA DRVSLT+ QALYAPL+ + +GKK F LA+S TPS D Sbjct: 38 PKDGGALTIGVSDNPDTMNPLYANDRVSLTVQQALYAPLYHMEDGKKKFVLAESFTPSED 97 Query: 92 NLTYTLKLKSGLTWHDGEKLTADDVVFTIEKILDEKQNSFLRANFLINDKPITATKVDDL 151 LT+TLKLK L WHDG+K+T+DD+ FT + ILDEKQNS R NF+ KP+ KVD+L Sbjct: 98 QLTWTLKLKDNLKWHDGKKITSDDIAFTFQSILDEKQNSSSRENFIFKGKPLEVKKVDEL 157 Query: 152 TVEFKLPQVSPAFEATLVQVTPIPKHIFENEADIEKSTKNAAPVGSGPFKFKEYKAGEYL 211 T +F LPQVS +FE + PIPKH+FE EAD+ KS KN PVGSGPFKFKEYK+ EY+ Sbjct: 158 TTQFVLPQVSASFEGVMNDFFPIPKHVFEGEADLAKSKKNLQPVGSGPFKFKEYKSDEYV 217 Query: 212 TLERFDNYFGGKPHLDSVTYRIAKDTNAANLALQNGEINVQYLDPKDVSTIQATNNFEIL 271 L+RFD+Y GGK LDS+ YR+ KD N AN++LQNG+IN++ ++P+D + +T NF ++ Sbjct: 218 ALDRFDDYVGGKAKLDSIVYRVVKDRNTANVSLQNGQINMKMIEPQDFKKLDSTGNFSMV 277 Query: 272 PYAEGRLSYLMFNANSDTGALAKKEVRQALSLALSRDEIIQTAYTSGEYADPAKSFLTPD 331 + EGRL YL +N N+D + KKEVRQA++ AL + E+I +A+ SGE+A+PA S LTPD Sbjct: 278 TFPEGRLFYLSYNMNTDL--MKKKEVRQAIAHALDKKEMINSAFVSGEFAEPANSILTPD 335 Query: 332 ALYFTNDVPTYDNDPAKAKELLQSAGVS-NLKLRFIVQSGNKAQEAISLYVQQKLKAIGV 390 A+Y+ D+ Y D +AK+LL AGV N K+R + + NK E+++LY QQKLK +G+ Sbjct: 336 AMYYAKDIKDYKYDKKEAKDLLAKAGVKDNEKVRVMYVTNNKIMESLALYTQQKLKEVGL 395 Query: 391 DVELQSMDSSAWVQKFIDLKSTDYELALTGYIMGYDPDAYRILFTSGASSNYSHYANPEV 450 +VEL ++D+SA +K +D ++ +Y++ GYIMG +PD+Y+ LF S A NY+ Y N + Sbjct: 396 EVELNALDASAASEKGLDKENKEYDITFGGYIMGPEPDSYKSLFLSNAEYNYARYKNADF 455 Query: 451 DKLLNEGAGEADTAKRAEIYKKAQELVAQDAPIYPIAYTKTVVAVSKNYGGLEEAVLKPV 510 DKL E A E D KRAE+Y K QE +D P PIAY K V+AV K + GL+EA PV Sbjct: 456 DKLWEEAAVETDKTKRAELYHKIQETAREDVPYLPIAYPKAVIAVDKKFDGLKEAKAIPV 515 Query: 511 VIFEDLSKIYQ 521 +FEDLSKIY+ Sbjct: 516 TMFEDLSKIYE 526 >C2RJ46.1 C2RJ46_BACCE Extracellular solute-binding protein family 5 Length = 528 Score = 548 bits (1413), Expect = e-154, Method: Compositional matrix adjust. Identities = 263/491 (53%), Positives = 351/491 (71%), Gaps = 3/491 (0%) Query: 32 PKDGGSLIIGVAADPVVLNPNYAGDRVSLTIDQALYAPLFQVNNGKKTFYLADSLTPSAD 91 PKDGG+L IGV+ +P +NP YA DRVSLT+ QALYAPL+ + NGKK F LA+S TPS D Sbjct: 38 PKDGGALTIGVSDNPDTMNPLYANDRVSLTVQQALYAPLYHMENGKKKFVLAESFTPSED 97 Query: 92 NLTYTLKLKSGLTWHDGEKLTADDVVFTIEKILDEKQNSFLRANFLINDKPITATKVDDL 151 LT+TLKLK L WHDG+K+T+DD+ FT + ILDEKQNS R NF+ KP+ KVD+L Sbjct: 98 QLTWTLKLKDNLKWHDGKKITSDDIAFTFQSILDEKQNSSSRENFIFKGKPLEVKKVDEL 157 Query: 152 TVEFKLPQVSPAFEATLVQVTPIPKHIFENEADIEKSTKNAAPVGSGPFKFKEYKAGEYL 211 T +F LPQVS +FE + PIPKH+FE EAD+ KS KN PVGSGPFKFKEYK+ EY+ Sbjct: 158 TTQFVLPQVSASFEGVMNDFFPIPKHVFEGEADLAKSKKNLQPVGSGPFKFKEYKSDEYV 217 Query: 212 TLERFDNYFGGKPHLDSVTYRIAKDTNAANLALQNGEINVQYLDPKDVSTIQATNNFEIL 271 L+RFD+Y GGK LDS+ YR+ KD N AN++LQNG+IN++ ++P+D + +T NF ++ Sbjct: 218 ALDRFDDYVGGKAKLDSIVYRVVKDRNTANVSLQNGQINMKMIEPQDFKKLDSTGNFSMV 277 Query: 272 PYAEGRLSYLMFNANSDTGALAKKEVRQALSLALSRDEIIQTAYTSGEYADPAKSFLTPD 331 + EGRL YL +N N T + KKEVRQA++ AL + E+I +A+ SGE+A+PA S LTPD Sbjct: 278 TFPEGRLFYLSYNMN--TELMKKKEVRQAIAHALDKKEMINSAFVSGEFAEPANSILTPD 335 Query: 332 ALYFTNDVPTYDNDPAKAKELLQSAGVSNL-KLRFIVQSGNKAQEAISLYVQQKLKAIGV 390 A+Y+ D+ Y D +AK+LL AGV + K+R + + NK E+++LY QQKLK +G+ Sbjct: 336 AMYYAKDIKEYKYDKKEAKDLLAKAGVKDKEKVRVMYVTNNKIMESLALYTQQKLKEVGL 395 Query: 391 DVELQSMDSSAWVQKFIDLKSTDYELALTGYIMGYDPDAYRILFTSGASSNYSHYANPEV 450 +VEL ++D+SA +K +D ++ +Y++ GYIMG +PD+Y+ LF S A NY+ Y N + Sbjct: 396 EVELNALDASAASEKGLDKENKEYDITFGGYIMGPEPDSYKSLFLSNAEYNYARYKNADF 455 Query: 451 DKLLNEGAGEADTAKRAEIYKKAQELVAQDAPIYPIAYTKTVVAVSKNYGGLEEAVLKPV 510 DKL E A E D KRAE+Y K QE +D P PIAY K V+AV K + GL+EA PV Sbjct: 456 DKLWEEAAVETDKTKRAELYHKIQETAREDVPYLPIAYPKAVIAVDKKFDGLKEAKAIPV 515 Query: 511 VIFEDLSKIYQ 521 +FEDLSKIY+ Sbjct: 516 TMFEDLSKIYE 526 >C2T9U3.1 C2T9U3_BACCE Extracellular solute-binding protein family 5 Length = 527 Score = 548 bits (1413), Expect = e-154, Method: Compositional matrix adjust. Identities = 263/491 (53%), Positives = 351/491 (71%), Gaps = 3/491 (0%) Query: 32 PKDGGSLIIGVAADPVVLNPNYAGDRVSLTIDQALYAPLFQVNNGKKTFYLADSLTPSAD 91 PKDGG+L IGV+ +P +NP YA DRVSLT+ QALYAPL+ + NGKK F LA+S TPS D Sbjct: 37 PKDGGALTIGVSDNPDTMNPLYANDRVSLTVQQALYAPLYHMENGKKKFVLAESFTPSED 96 Query: 92 NLTYTLKLKSGLTWHDGEKLTADDVVFTIEKILDEKQNSFLRANFLINDKPITATKVDDL 151 LT+TLKLK L WHDG+K+T+DD+ FT + ILDEKQNS R NF+ KP+ KVD+L Sbjct: 97 QLTWTLKLKDNLKWHDGKKITSDDIAFTFQSILDEKQNSSSRENFIFKGKPLEVKKVDEL 156 Query: 152 TVEFKLPQVSPAFEATLVQVTPIPKHIFENEADIEKSTKNAAPVGSGPFKFKEYKAGEYL 211 T +F LPQVS +FE + PIPKH+FE EAD+ KS KN PVGSGPFKFKEYK+ EY+ Sbjct: 157 TTQFVLPQVSASFEGVMNDFFPIPKHVFEGEADLAKSKKNLQPVGSGPFKFKEYKSDEYV 216 Query: 212 TLERFDNYFGGKPHLDSVTYRIAKDTNAANLALQNGEINVQYLDPKDVSTIQATNNFEIL 271 L+RFD+Y GGK LDS+ YR+ KD N AN++LQNG+IN++ ++P+D + +T NF ++ Sbjct: 217 ALDRFDDYVGGKAKLDSIVYRVVKDRNTANVSLQNGQINMKMIEPQDFKKLDSTGNFSMV 276 Query: 272 PYAEGRLSYLMFNANSDTGALAKKEVRQALSLALSRDEIIQTAYTSGEYADPAKSFLTPD 331 + EGRL YL +N N T + KKEVRQA++ AL + E+I +A+ SGE+A+PA S LTPD Sbjct: 277 TFPEGRLFYLSYNMN--TELMKKKEVRQAIAHALDKKEMINSAFVSGEFAEPANSILTPD 334 Query: 332 ALYFTNDVPTYDNDPAKAKELLQSAGVSNL-KLRFIVQSGNKAQEAISLYVQQKLKAIGV 390 A+Y+ D+ Y D +AK+LL AGV + K+R + + NK E+++LY QQKLK +G+ Sbjct: 335 AMYYAKDIKEYKYDKKEAKDLLAKAGVKDKEKVRVMYVTNNKIMESLALYTQQKLKEVGL 394 Query: 391 DVELQSMDSSAWVQKFIDLKSTDYELALTGYIMGYDPDAYRILFTSGASSNYSHYANPEV 450 +VEL ++D+SA +K +D ++ +Y++ GYIMG +PD+Y+ LF S A NY+ Y N + Sbjct: 395 EVELNALDASAASEKGLDKENKEYDITFGGYIMGPEPDSYKSLFLSNAEYNYARYKNADF 454 Query: 451 DKLLNEGAGEADTAKRAEIYKKAQELVAQDAPIYPIAYTKTVVAVSKNYGGLEEAVLKPV 510 DKL E A E D KRAE+Y K QE +D P PIAY K V+AV K + GL+EA PV Sbjct: 455 DKLWEEAAVETDKTKRAELYHKIQETAREDVPYLPIAYPKAVIAVDKKFDGLKEAKAIPV 514 Query: 511 VIFEDLSKIYQ 521 +FEDLSKIY+ Sbjct: 515 TMFEDLSKIYE 525 >C3GX64.1 C3GX64_BACTU Extracellular solute-binding protein family 5 Length = 528 Score = 548 bits (1413), Expect = e-154, Method: Compositional matrix adjust. Identities = 262/491 (53%), Positives = 352/491 (71%), Gaps = 3/491 (0%) Query: 32 PKDGGSLIIGVAADPVVLNPNYAGDRVSLTIDQALYAPLFQVNNGKKTFYLADSLTPSAD 91 PKDGG+L IGV+ +P +NP YA DRVSLT+ QALYAPL+ + +GKK F LA+S TPS D Sbjct: 38 PKDGGTLTIGVSDNPDTMNPLYANDRVSLTVQQALYAPLYHMEDGKKKFVLAESFTPSED 97 Query: 92 NLTYTLKLKSGLTWHDGEKLTADDVVFTIEKILDEKQNSFLRANFLINDKPITATKVDDL 151 LT+TLKLK L WHDG+K+T+DD+ FT + ILDEKQNS R NF+ KP+ KVD+L Sbjct: 98 QLTWTLKLKDNLKWHDGKKITSDDIAFTFQSILDEKQNSSSRENFIFKGKPLEVKKVDEL 157 Query: 152 TVEFKLPQVSPAFEATLVQVTPIPKHIFENEADIEKSTKNAAPVGSGPFKFKEYKAGEYL 211 T +F LPQVS +FE + PIPKH+FE EAD+ KS KN PVGSGPFKFKEYK+ EY+ Sbjct: 158 TTQFVLPQVSASFEGVMNDFFPIPKHVFEGEADLAKSKKNLQPVGSGPFKFKEYKSDEYV 217 Query: 212 TLERFDNYFGGKPHLDSVTYRIAKDTNAANLALQNGEINVQYLDPKDVSTIQATNNFEIL 271 L+RFD+Y GGK LDS+ YR+ KD N AN++LQNG+IN++ ++P+D + +T NF ++ Sbjct: 218 ALDRFDDYVGGKAKLDSIVYRVVKDRNTANVSLQNGQINMKMIEPQDFKKLDSTGNFSMV 277 Query: 272 PYAEGRLSYLMFNANSDTGALAKKEVRQALSLALSRDEIIQTAYTSGEYADPAKSFLTPD 331 + EGRL YL +N N+D + KKEVRQA++ AL + E+I +A+ SGE+A+PA S LTPD Sbjct: 278 TFPEGRLFYLSYNMNTDL--MKKKEVRQAIAHALDKKEMINSAFVSGEFAEPANSILTPD 335 Query: 332 ALYFTNDVPTYDNDPAKAKELLQSAGVSNL-KLRFIVQSGNKAQEAISLYVQQKLKAIGV 390 A+Y+ D+ Y D +AK+LL AGV + K+R + + NK E+++LY QQKLK +G+ Sbjct: 336 AMYYAKDIKDYKYDKKEAKDLLAKAGVKDKEKVRVMYVTNNKIMESLALYTQQKLKEVGL 395 Query: 391 DVELQSMDSSAWVQKFIDLKSTDYELALTGYIMGYDPDAYRILFTSGASSNYSHYANPEV 450 +VEL ++D+SA +K +D ++ +Y++ GYIMG +PD+Y+ LF S A NY+ Y N + Sbjct: 396 EVELNALDASAASEKGLDKENKEYDITFGGYIMGPEPDSYKSLFLSNAEYNYARYKNADF 455 Query: 451 DKLLNEGAGEADTAKRAEIYKKAQELVAQDAPIYPIAYTKTVVAVSKNYGGLEEAVLKPV 510 DKL E A E D KRAE+Y K QE +D P PIAY K V+AV K + GL+EA PV Sbjct: 456 DKLWEEAAVETDKTKRAELYHKIQETAREDVPYLPIAYPKAVIAVDKKFDGLKEAKAIPV 515 Query: 511 VIFEDLSKIYQ 521 +FEDLSKIY+ Sbjct: 516 TMFEDLSKIYE 526 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,982,212,547 Number of extensions: 127685772 Number of successful extensions: 277655 Number of sequences better than 1.0e-05: 7231 Number of HSP's gapped: 262799 Number of HSP's successfully gapped: 7270 Length of query: 522 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 382 Effective length of database: 1,741,754,103 Effective search space: 665350067346 Effective search space used: 665350067346 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 134 (56.2 bits)