BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0042.p (885 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B5UHR0.1 B5UHR0_BACCE ATP-dependent Clp protease, ATP-binding su... 1172 0.0 B7HGS9.1 B7HGS9_BACC4 ATP-dependent Clp protease, ATP-binding su... 1171 0.0 C3EHL3.1 C3EHL3_BACTK Chaperone protein clpB 1 1171 0.0 C3E0B8.1 C3E0B8_BACTU Chaperone protein clpB 1 1171 0.0 C2Y7H4.1 C2Y7H4_BACCE Chaperone protein clpB 1 1171 0.0 >B5UHR0.1 B5UHR0_BACCE ATP-dependent Clp protease, ATP-binding subunit ClpB Length = 866 Score = 1172 bits (3031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 585/869 (67%), Positives = 707/869 (81%), Gaps = 5/869 (0%) Query: 5 MDFNKLTQKLQEXXXXXXXXXXXXGHQEIDNLHLLKALLQQHEGLLPRLLQKINIPVPEL 64 MD N++T K QE HQE+D +HLL ALL++ +GL R+ QK+N+ + L Sbjct: 1 MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLEEQDGLAVRIFQKMNVDIEAL 60 Query: 65 LQGTEALLQRKPSISGSGAGTMRRYASPSLIAVLEQAEKEAAQMQDEFVAVEHAVLAMVS 124 QG E+L+++KPS++GSGA + Y + +L +L +A KEA ++QD++++VEH +LA Sbjct: 61 KQGAESLIKKKPSVTGSGAEVGKLYVTSALQQLLVRAGKEAEKLQDDYISVEHVLLAFSE 120 Query: 125 DSSSGNRELRGLFTSRGVTRDKLLEVLAEIRGHQRVTSREPEATYEVLEKYGRDLVAEVR 184 + N+ LFT +T+D LL+ L +RG+QRVTS+ PEATYE LEKYGRDLVAEVR Sbjct: 121 EKGDINQ----LFTRLHITKDNLLQSLMTVRGNQRVTSQNPEATYEALEKYGRDLVAEVR 176 Query: 185 AGKIDPVIGRDGEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAHRIVRKDVPEGLK 244 AGKIDPVIGRD EIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLA RIV+KDVPEGLK Sbjct: 177 AGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLK 236 Query: 245 DKTIFSLDMSALIAGAKYRGEFEERLQAVLKEIRESDGRIILFIDELHTIVGAGKTEGAM 304 D+TIF+LDMSAL+AGAK+RGEFEERLQAVL EI++S+GRI+LFIDELHTIVGAGKTEGAM Sbjct: 237 DRTIFALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAM 296 Query: 305 DAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVLVSEPDVEDTISILRGL 364 DAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVL EP VEDTISILRGL Sbjct: 297 DAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGL 356 Query: 365 KERFEVHHGVKIHDSALVAAGVLSNRYITDRFLPDKAIDLVDEACAMIRTEIDSMPGEMD 424 KERFE++HGV IHD A+VAA VLS+RYI+DRFLPDKAIDLVDEACA IRTEIDSMP E+D Sbjct: 357 KERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEACATIRTEIDSMPTELD 416 Query: 425 EVTRRLMQMEIEEAALKKETDDASKRRLETLQRELADLKEKHLGMTARWEKEKSAIQGLR 484 EVTRR+MQ+EIEEAAL KETD S+ RL+TLQREL+DLKE GM A+WEKEK I +R Sbjct: 417 EVTRRIMQLEIEEAALGKETDRGSQERLKTLQRELSDLKEVASGMRAKWEKEKEEIHKVR 476 Query: 485 ELKKKLEQARKDLVDAQEVYDLNKSAELSYGIIPDLERQLKXXXXXXSQD-QESRLLREA 543 +L++ LE+ R++L +A+ YDLNK+AEL +G IP +E++LK + + QE+RLLRE Sbjct: 477 DLREHLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREE 536 Query: 544 VTAEEIADIVSRWTGVPVSRLVEGERDKLLRLEDTLHERVVGQEEXXXXXXXXXXXXXXG 603 V+ EEIADIVSRWTG+PV++LVEGER+KLLRLE L ERV+GQEE G Sbjct: 537 VSEEEIADIVSRWTGIPVAKLVEGEREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAG 596 Query: 604 IKDPNRPIGSFLFLGPTGVGKTELAKALAVSLFDREDGMIRIDMSEYMEKHSVSRLVGAP 663 IKDPNRPIGSF+FLGPTGVGKTELAK LA SLFD E+ MIRIDMSEYMEKH+VSRL+GAP Sbjct: 597 IKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAP 656 Query: 664 PGYVGYEEGGQLTEAVRRQPYTVVLLDEVEKAHPDVFNILLQLLDDGRLTDSQGRMVDFK 723 PGYVGYEEGGQLTEAVRR+PY+VVLLDE+EKAHP+VFNILLQ+LDDGR+TDSQGR VDFK Sbjct: 657 PGYVGYEEGGQLTEAVRRKPYSVVLLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFK 716 Query: 724 NTIIIMTSNIGSPHLIQGTDDNGELTNAVKDRVMKELSGHFRPEFLNRVDDIVMFKPLQL 783 NT+IIMTSNIGS HL+ G +++G + +D VM +L GHFRPEFLNRVD+I++FKPL Sbjct: 717 NTVIIMTSNIGSAHLLDGLEEDGSIKEESRDLVMGQLRGHFRPEFLNRVDEIILFKPLTT 776 Query: 784 DEIEQIVVKLVDGLRVRLAERGVGLALSEAAVRFIAREGFDPVYGARPLKRFIQRSLETR 843 +EI+ IV K+V L+ RLA+R + + L++AA F+ GFDP+YGARPLKR++QR +ET+ Sbjct: 777 NEIKSIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETK 836 Query: 844 VARALIAGEAEEGSVMEVNEAGGELSVSI 872 +AR LIAG + S + V+ EL V + Sbjct: 837 LARELIAGTITDNSHVVVDVENNELVVHV 865 >B7HGS9.1 B7HGS9_BACC4 ATP-dependent Clp protease, ATP-binding subunit ClpB Length = 866 Score = 1171 bits (3029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 585/869 (67%), Positives = 707/869 (81%), Gaps = 5/869 (0%) Query: 5 MDFNKLTQKLQEXXXXXXXXXXXXGHQEIDNLHLLKALLQQHEGLLPRLLQKINIPVPEL 64 MD N++T K QE HQE+D +HLL ALL++ +GL R+ QK+N+ + L Sbjct: 1 MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLEEQDGLAVRIFQKMNVDIEAL 60 Query: 65 LQGTEALLQRKPSISGSGAGTMRRYASPSLIAVLEQAEKEAAQMQDEFVAVEHAVLAMVS 124 QG E+L+++KPS++GSGA + Y + +L +L +A KEA ++QD++++VEH +LA Sbjct: 61 KQGAESLIKKKPSVTGSGAEVGKLYVTSALQQLLVRAGKEAEKLQDDYISVEHVLLAFSE 120 Query: 125 DSSSGNRELRGLFTSRGVTRDKLLEVLAEIRGHQRVTSREPEATYEVLEKYGRDLVAEVR 184 + N+ LFT +T+D LL+ L +RG+QRVTS+ PEATYE LEKYGRDLVAEVR Sbjct: 121 EKGDINQ----LFTRLHITKDNLLQSLMTVRGNQRVTSQNPEATYEALEKYGRDLVAEVR 176 Query: 185 AGKIDPVIGRDGEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAHRIVRKDVPEGLK 244 AGKIDPVIGRD EIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLA RIV+KDVPEGLK Sbjct: 177 AGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLK 236 Query: 245 DKTIFSLDMSALIAGAKYRGEFEERLQAVLKEIRESDGRIILFIDELHTIVGAGKTEGAM 304 D+TIF+LDMSAL+AGAK+RGEFEERLQAVL EI++S+GRI+LFIDELHTIVGAGKTEGAM Sbjct: 237 DRTIFALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAM 296 Query: 305 DAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVLVSEPDVEDTISILRGL 364 DAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVL EP VEDTISILRGL Sbjct: 297 DAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGL 356 Query: 365 KERFEVHHGVKIHDSALVAAGVLSNRYITDRFLPDKAIDLVDEACAMIRTEIDSMPGEMD 424 KERFE++HGV IHD A+VAA VLS+RYI+DRFLPDKAIDLVDEACA IRTEIDSMP E+D Sbjct: 357 KERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEACATIRTEIDSMPTELD 416 Query: 425 EVTRRLMQMEIEEAALKKETDDASKRRLETLQRELADLKEKHLGMTARWEKEKSAIQGLR 484 EVTRR+MQ+EIEEAAL KETD S+ RL+TLQREL+DLKE GM A+WEKEK I +R Sbjct: 417 EVTRRIMQLEIEEAALGKETDRGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVR 476 Query: 485 ELKKKLEQARKDLVDAQEVYDLNKSAELSYGIIPDLERQLKXXXXXXSQD-QESRLLREA 543 +L++ LE+ R++L +A+ YDLNK+AEL +G IP +E++LK + + QE+RLLRE Sbjct: 477 DLREHLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREE 536 Query: 544 VTAEEIADIVSRWTGVPVSRLVEGERDKLLRLEDTLHERVVGQEEXXXXXXXXXXXXXXG 603 V+ EEIADIVSRWTG+PV++LVEGER+KLLRLE L ERV+GQEE G Sbjct: 537 VSEEEIADIVSRWTGIPVAKLVEGEREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAG 596 Query: 604 IKDPNRPIGSFLFLGPTGVGKTELAKALAVSLFDREDGMIRIDMSEYMEKHSVSRLVGAP 663 IKDPNRPIGSF+FLGPTGVGKTELAK LA SLFD E+ MIRIDMSEYMEKH+VSRL+GAP Sbjct: 597 IKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAP 656 Query: 664 PGYVGYEEGGQLTEAVRRQPYTVVLLDEVEKAHPDVFNILLQLLDDGRLTDSQGRMVDFK 723 PGYVGYEEGGQLTEAVRR+PY+VVLLDE+EKAHP+VFNILLQ+LDDGR+TDSQGR VDFK Sbjct: 657 PGYVGYEEGGQLTEAVRRKPYSVVLLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFK 716 Query: 724 NTIIIMTSNIGSPHLIQGTDDNGELTNAVKDRVMKELSGHFRPEFLNRVDDIVMFKPLQL 783 NT+IIMTSNIGS HL+ G +++G + +D VM +L GHFRPEFLNRVD+I++FKPL Sbjct: 717 NTVIIMTSNIGSAHLLDGLEEDGSIKEESRDLVMGQLRGHFRPEFLNRVDEIILFKPLTT 776 Query: 784 DEIEQIVVKLVDGLRVRLAERGVGLALSEAAVRFIAREGFDPVYGARPLKRFIQRSLETR 843 +EI+ IV K+V L+ RLA+R + + L++AA F+ GFDP+YGARPLKR++QR +ET+ Sbjct: 777 NEIKGIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETK 836 Query: 844 VARALIAGEAEEGSVMEVNEAGGELSVSI 872 +AR LIAG + S + V+ EL V + Sbjct: 837 LARELIAGTITDNSHVVVDVENNELVVHV 865 >C3EHL3.1 C3EHL3_BACTK Chaperone protein clpB 1 Length = 866 Score = 1171 bits (3029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 585/869 (67%), Positives = 707/869 (81%), Gaps = 5/869 (0%) Query: 5 MDFNKLTQKLQEXXXXXXXXXXXXGHQEIDNLHLLKALLQQHEGLLPRLLQKINIPVPEL 64 MD N++T K QE HQE+D +HLL ALL++ +GL R+ QK+N+ + L Sbjct: 1 MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLEEQDGLAVRIFQKMNVDIEAL 60 Query: 65 LQGTEALLQRKPSISGSGAGTMRRYASPSLIAVLEQAEKEAAQMQDEFVAVEHAVLAMVS 124 QG E+L+++KPS++GSGA + Y + +L +L +A KEA ++QD++++VEH +LA Sbjct: 61 KQGAESLIKKKPSVTGSGAEVGKLYVTSALQQLLVRAGKEAEKLQDDYISVEHVLLAFSE 120 Query: 125 DSSSGNRELRGLFTSRGVTRDKLLEVLAEIRGHQRVTSREPEATYEVLEKYGRDLVAEVR 184 + N+ LFT +T+D LL+ L +RG+QRVTS+ PEATYE LEKYGRDLVAEVR Sbjct: 121 EKGDINQ----LFTRLHITKDNLLQSLMTVRGNQRVTSQNPEATYEALEKYGRDLVAEVR 176 Query: 185 AGKIDPVIGRDGEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAHRIVRKDVPEGLK 244 AGKIDPVIGRD EIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLA RIV+KDVPEGLK Sbjct: 177 AGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLK 236 Query: 245 DKTIFSLDMSALIAGAKYRGEFEERLQAVLKEIRESDGRIILFIDELHTIVGAGKTEGAM 304 D+TIF+LDMSAL+AGAK+RGEFEERLQAVL EI++S+GRI+LFIDELHTIVGAGKTEGAM Sbjct: 237 DRTIFALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAM 296 Query: 305 DAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVLVSEPDVEDTISILRGL 364 DAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVL EP VEDTISILRGL Sbjct: 297 DAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGL 356 Query: 365 KERFEVHHGVKIHDSALVAAGVLSNRYITDRFLPDKAIDLVDEACAMIRTEIDSMPGEMD 424 KERFE++HGV IHD A+VAA VLS+RYI+DRFLPDKAIDLVDEACA IRTEIDSMP E+D Sbjct: 357 KERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEACATIRTEIDSMPTELD 416 Query: 425 EVTRRLMQMEIEEAALKKETDDASKRRLETLQRELADLKEKHLGMTARWEKEKSAIQGLR 484 EVTRR+MQ+EIEEAAL KETD S+ RL+TLQREL+DLKE GM A+WEKEK I +R Sbjct: 417 EVTRRIMQLEIEEAALGKETDRGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVR 476 Query: 485 ELKKKLEQARKDLVDAQEVYDLNKSAELSYGIIPDLERQLKXXXXXXSQD-QESRLLREA 543 +L++ LE+ R++L +A+ YDLNK+AEL +G IP +E++LK + + QE+RLLRE Sbjct: 477 DLREHLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREE 536 Query: 544 VTAEEIADIVSRWTGVPVSRLVEGERDKLLRLEDTLHERVVGQEEXXXXXXXXXXXXXXG 603 V+ EEIADIVSRWTG+PV++LVEGER+KLLRLE L ERV+GQEE G Sbjct: 537 VSEEEIADIVSRWTGIPVAKLVEGEREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAG 596 Query: 604 IKDPNRPIGSFLFLGPTGVGKTELAKALAVSLFDREDGMIRIDMSEYMEKHSVSRLVGAP 663 IKDPNRPIGSF+FLGPTGVGKTELAK LA SLFD E+ MIRIDMSEYMEKH+VSRL+GAP Sbjct: 597 IKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAP 656 Query: 664 PGYVGYEEGGQLTEAVRRQPYTVVLLDEVEKAHPDVFNILLQLLDDGRLTDSQGRMVDFK 723 PGYVGYEEGGQLTEAVRR+PY+VVLLDE+EKAHP+VFNILLQ+LDDGR+TDSQGR VDFK Sbjct: 657 PGYVGYEEGGQLTEAVRRKPYSVVLLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFK 716 Query: 724 NTIIIMTSNIGSPHLIQGTDDNGELTNAVKDRVMKELSGHFRPEFLNRVDDIVMFKPLQL 783 NT+IIMTSNIGS HL+ G +++G + +D VM +L GHFRPEFLNRVD+I++FKPL Sbjct: 717 NTVIIMTSNIGSAHLLDGLEEDGSIKEESRDLVMGQLRGHFRPEFLNRVDEIILFKPLTT 776 Query: 784 DEIEQIVVKLVDGLRVRLAERGVGLALSEAAVRFIAREGFDPVYGARPLKRFIQRSLETR 843 +EI+ IV K+V L+ RLA+R + + L++AA F+ GFDP+YGARPLKR++QR +ET+ Sbjct: 777 NEIKGIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETK 836 Query: 844 VARALIAGEAEEGSVMEVNEAGGELSVSI 872 +AR LIAG + S + V+ EL V + Sbjct: 837 LARELIAGTITDNSHVVVDVENNELVVHV 865 >C3E0B8.1 C3E0B8_BACTU Chaperone protein clpB 1 Length = 866 Score = 1171 bits (3029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 585/869 (67%), Positives = 707/869 (81%), Gaps = 5/869 (0%) Query: 5 MDFNKLTQKLQEXXXXXXXXXXXXGHQEIDNLHLLKALLQQHEGLLPRLLQKINIPVPEL 64 MD N++T K QE HQE+D +HLL ALL++ +GL R+ QK+N+ + L Sbjct: 1 MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLEEQDGLAVRIFQKMNVDIEAL 60 Query: 65 LQGTEALLQRKPSISGSGAGTMRRYASPSLIAVLEQAEKEAAQMQDEFVAVEHAVLAMVS 124 QG E+L+++KPS++GSGA + Y + +L +L +A KEA ++QD++++VEH +LA Sbjct: 61 KQGAESLIKKKPSVTGSGAEVGKLYVTSALQQLLVRAGKEAEKLQDDYISVEHVLLAFSE 120 Query: 125 DSSSGNRELRGLFTSRGVTRDKLLEVLAEIRGHQRVTSREPEATYEVLEKYGRDLVAEVR 184 + N+ LFT +T+D LL+ L +RG+QRVTS+ PEATYE LEKYGRDLVAEVR Sbjct: 121 EKGDINQ----LFTRLHITKDNLLQSLMTVRGNQRVTSQNPEATYEALEKYGRDLVAEVR 176 Query: 185 AGKIDPVIGRDGEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAHRIVRKDVPEGLK 244 AGKIDPVIGRD EIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLA RIV+KDVPEGLK Sbjct: 177 AGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLK 236 Query: 245 DKTIFSLDMSALIAGAKYRGEFEERLQAVLKEIRESDGRIILFIDELHTIVGAGKTEGAM 304 D+TIF+LDMSAL+AGAK+RGEFEERLQAVL EI++S+GRI+LFIDELHTIVGAGKTEGAM Sbjct: 237 DRTIFALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAM 296 Query: 305 DAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVLVSEPDVEDTISILRGL 364 DAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVL EP VEDTISILRGL Sbjct: 297 DAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGL 356 Query: 365 KERFEVHHGVKIHDSALVAAGVLSNRYITDRFLPDKAIDLVDEACAMIRTEIDSMPGEMD 424 KERFE++HGV IHD A+VAA VLS+RYI+DRFLPDKAIDLVDEACA IRTEIDSMP E+D Sbjct: 357 KERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEACATIRTEIDSMPTELD 416 Query: 425 EVTRRLMQMEIEEAALKKETDDASKRRLETLQRELADLKEKHLGMTARWEKEKSAIQGLR 484 EVTRR+MQ+EIEEAAL KETD S+ RL+TLQREL+DLKE GM A+WEKEK I +R Sbjct: 417 EVTRRIMQLEIEEAALGKETDRGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVR 476 Query: 485 ELKKKLEQARKDLVDAQEVYDLNKSAELSYGIIPDLERQLKXXXXXXSQD-QESRLLREA 543 +L++ LE+ R++L +A+ YDLNK+AEL +G IP +E++LK + + QE+RLLRE Sbjct: 477 DLREHLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREE 536 Query: 544 VTAEEIADIVSRWTGVPVSRLVEGERDKLLRLEDTLHERVVGQEEXXXXXXXXXXXXXXG 603 V+ EEIADIVSRWTG+PV++LVEGER+KLLRLE L ERV+GQEE G Sbjct: 537 VSEEEIADIVSRWTGIPVAKLVEGEREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAG 596 Query: 604 IKDPNRPIGSFLFLGPTGVGKTELAKALAVSLFDREDGMIRIDMSEYMEKHSVSRLVGAP 663 IKDPNRPIGSF+FLGPTGVGKTELAK LA SLFD E+ MIRIDMSEYMEKH+VSRL+GAP Sbjct: 597 IKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAP 656 Query: 664 PGYVGYEEGGQLTEAVRRQPYTVVLLDEVEKAHPDVFNILLQLLDDGRLTDSQGRMVDFK 723 PGYVGYEEGGQLTEAVRR+PY+VVLLDE+EKAHP+VFNILLQ+LDDGR+TDSQGR VDFK Sbjct: 657 PGYVGYEEGGQLTEAVRRKPYSVVLLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFK 716 Query: 724 NTIIIMTSNIGSPHLIQGTDDNGELTNAVKDRVMKELSGHFRPEFLNRVDDIVMFKPLQL 783 NT+IIMTSNIGS HL+ G +++G + +D VM +L GHFRPEFLNRVD+I++FKPL Sbjct: 717 NTVIIMTSNIGSAHLLDGLEEDGSIKEESRDLVMGQLRGHFRPEFLNRVDEIILFKPLTT 776 Query: 784 DEIEQIVVKLVDGLRVRLAERGVGLALSEAAVRFIAREGFDPVYGARPLKRFIQRSLETR 843 +EI+ IV K+V L+ RLA+R + + L++AA F+ GFDP+YGARPLKR++QR +ET+ Sbjct: 777 NEIKGIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETK 836 Query: 844 VARALIAGEAEEGSVMEVNEAGGELSVSI 872 +AR LIAG + S + V+ EL V + Sbjct: 837 LARELIAGTITDNSHVVVDVENNELVVHV 865 >C2Y7H4.1 C2Y7H4_BACCE Chaperone protein clpB 1 Length = 866 Score = 1171 bits (3029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 585/869 (67%), Positives = 707/869 (81%), Gaps = 5/869 (0%) Query: 5 MDFNKLTQKLQEXXXXXXXXXXXXGHQEIDNLHLLKALLQQHEGLLPRLLQKINIPVPEL 64 MD N++T K QE HQE+D +HLL ALL++ +GL R+ QK+N+ + L Sbjct: 1 MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLEEQDGLAVRIFQKMNVDIEAL 60 Query: 65 LQGTEALLQRKPSISGSGAGTMRRYASPSLIAVLEQAEKEAAQMQDEFVAVEHAVLAMVS 124 QG E+L+++KPS++GSGA + Y + +L +L +A KEA ++QD++++VEH +LA Sbjct: 61 KQGAESLIKKKPSVTGSGAEVGKLYVTSALQQLLVRAGKEAEKLQDDYISVEHVLLAFSE 120 Query: 125 DSSSGNRELRGLFTSRGVTRDKLLEVLAEIRGHQRVTSREPEATYEVLEKYGRDLVAEVR 184 + N+ LFT +T+D LL+ L +RG+QRVTS+ PEATYE LEKYGRDLVAEVR Sbjct: 121 EKGDINQ----LFTRLHITKDNLLQSLMTVRGNQRVTSQNPEATYEALEKYGRDLVAEVR 176 Query: 185 AGKIDPVIGRDGEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAHRIVRKDVPEGLK 244 AGKIDPVIGRD EIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLA RIV+KDVPEGLK Sbjct: 177 AGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLK 236 Query: 245 DKTIFSLDMSALIAGAKYRGEFEERLQAVLKEIRESDGRIILFIDELHTIVGAGKTEGAM 304 D+TIF+LDMSAL+AGAK+RGEFEERLQAVL EI++S+GRI+LFIDELHTIVGAGKTEGAM Sbjct: 237 DRTIFALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAM 296 Query: 305 DAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVLVSEPDVEDTISILRGL 364 DAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVL EP VEDTISILRGL Sbjct: 297 DAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGL 356 Query: 365 KERFEVHHGVKIHDSALVAAGVLSNRYITDRFLPDKAIDLVDEACAMIRTEIDSMPGEMD 424 KERFE++HGV IHD A+VAA VLS+RYI+DRFLPDKAIDLVDEACA IRTEIDSMP E+D Sbjct: 357 KERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEACATIRTEIDSMPTELD 416 Query: 425 EVTRRLMQMEIEEAALKKETDDASKRRLETLQRELADLKEKHLGMTARWEKEKSAIQGLR 484 EVTRR+MQ+EIEEAAL KETD S+ RL+TLQREL+DLKE GM A+WEKEK I +R Sbjct: 417 EVTRRIMQLEIEEAALGKETDRGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVR 476 Query: 485 ELKKKLEQARKDLVDAQEVYDLNKSAELSYGIIPDLERQLKXXXXXXSQD-QESRLLREA 543 +L++ LE+ R++L +A+ YDLNK+AEL +G IP +E++LK + + QE+RLLRE Sbjct: 477 DLREHLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREE 536 Query: 544 VTAEEIADIVSRWTGVPVSRLVEGERDKLLRLEDTLHERVVGQEEXXXXXXXXXXXXXXG 603 V+ EEIADIVSRWTG+PV++LVEGER+KLLRLE L ERV+GQEE G Sbjct: 537 VSEEEIADIVSRWTGIPVAKLVEGEREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAG 596 Query: 604 IKDPNRPIGSFLFLGPTGVGKTELAKALAVSLFDREDGMIRIDMSEYMEKHSVSRLVGAP 663 IKDPNRPIGSF+FLGPTGVGKTELAK LA SLFD E+ MIRIDMSEYMEKH+VSRL+GAP Sbjct: 597 IKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAP 656 Query: 664 PGYVGYEEGGQLTEAVRRQPYTVVLLDEVEKAHPDVFNILLQLLDDGRLTDSQGRMVDFK 723 PGYVGYEEGGQLTEAVRR+PY+VVLLDE+EKAHP+VFNILLQ+LDDGR+TDSQGR VDFK Sbjct: 657 PGYVGYEEGGQLTEAVRRKPYSVVLLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFK 716 Query: 724 NTIIIMTSNIGSPHLIQGTDDNGELTNAVKDRVMKELSGHFRPEFLNRVDDIVMFKPLQL 783 NT+IIMTSNIGS HL+ G +++G + +D VM +L GHFRPEFLNRVD+I++FKPL Sbjct: 717 NTVIIMTSNIGSAHLLDGLEEDGSIKEESRDLVMGQLRGHFRPEFLNRVDEIILFKPLTT 776 Query: 784 DEIEQIVVKLVDGLRVRLAERGVGLALSEAAVRFIAREGFDPVYGARPLKRFIQRSLETR 843 +EI+ IV K+V L+ RLA+R + + L++AA F+ GFDP+YGARPLKR++QR +ET+ Sbjct: 777 NEIKGIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETK 836 Query: 844 VARALIAGEAEEGSVMEVNEAGGELSVSI 872 +AR LIAG + S + V+ EL V + Sbjct: 837 LARELIAGTITDNSHVVVDVENNELVVHV 865 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,737,936,544 Number of extensions: 197440752 Number of successful extensions: 904195 Number of sequences better than 1.0e-05: 4809 Number of HSP's gapped: 885992 Number of HSP's successfully gapped: 6893 Length of query: 885 Length of database: 3,060,696,203 Length adjustment: 145 Effective length of query: 740 Effective length of database: 1,694,649,028 Effective search space: 1254040280720 Effective search space used: 1254040280720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 136 (57.0 bits)