BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0038.p (155 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3L8.1 B3K3L8_9BACI Heat shock protein Hsp20 160 4e-38 C1PB40.1 C1PB40_BACCO Heat shock protein Hsp20 112 1e-23 C1PB33.1 C1PB33_BACCO Heat shock protein Hsp20 108 2e-22 C3L2B5.1 C3L2B5_CLOB6 Heat shock protein 94 4e-18 B1QNI1.1 B1QNI1_CLOBO Heat shock protein 94 4e-18 >B3K3L8.1 B3K3L8_9BACI Heat shock protein Hsp20 Length = 153 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 80/151 (52%), Positives = 107/151 (70%), Gaps = 4/151 (2%) Query: 1 MFDLVPFGKRRDDAFGVLAKSLNEVFND----DFFAPIKSSTMSFRTDIRESEQAYLIEA 56 MF+L+PFGKRR+DAFG L KS ++ FND D FAP K S MSF+TD++E+E AYL+EA Sbjct: 2 MFELMPFGKRREDAFGQLMKSFHDAFNDAFPDDVFAPFKGSMMSFKTDVKETEHAYLVEA 61 Query: 57 ELPGFKKEEIDIDYASPYLTIKAVRKEENSEENKDHQXXXXXXXXXXXXXXXXXQDVAED 116 ELPGF+K++I+I YA PYLTIKAVRKE+ S E+ + Q++AED Sbjct: 62 ELPGFRKDDIEISYADPYLTIKAVRKEDQSVEDTNQHIVRKERRYGEYVRRFYVQNIAED 121 Query: 117 EIRASLKDGLLTLSVPKQQKSLGKRIEIQDN 147 +I ASLKDG+L L +PK+ + KRI+I+D+ Sbjct: 122 QIDASLKDGVLKLEIPKKPEPGKKRIQIRDD 152 >C1PB40.1 C1PB40_BACCO Heat shock protein Hsp20 Length = 146 Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 61/147 (41%), Positives = 90/147 (61%), Gaps = 3/147 (2%) Query: 1 MFDLVPFGKRRDDAFGVLAKSLNEVFNDDFFAPIKSSTMSFRTDIRESEQAYLIEAELPG 60 MFDL+PF +R +D F + K+ N++F+ + P + SFRTDI E E AYL+EAELPG Sbjct: 1 MFDLMPF-RRNEDVFERMLKTFNDMFDTNALTPFNGNANSFRTDITEKEDAYLVEAELPG 59 Query: 61 FKKEEIDIDYASPYLTIKAVRKEENSEENKDHQXXXXXXXXXXXXXXXXXQDVAEDEIRA 120 F KE+I ID + YLTI+A R + +++ ++ ++ EDEI A Sbjct: 60 FSKEDITIDVNNNYLTIRAKRDQMEESKDEKNKVIRQERRYGEFVRQFYVDNIKEDEISA 119 Query: 121 SLKDGLLTLSVPKQQK--SLGKRIEIQ 145 +L +G+L +++PK+ K S GKRIEIQ Sbjct: 120 TLDNGVLKINIPKKTKEGSSGKRIEIQ 146 >C1PB33.1 C1PB33_BACCO Heat shock protein Hsp20 Length = 145 Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/147 (42%), Positives = 89/147 (60%), Gaps = 4/147 (2%) Query: 1 MFDLVPFGKRRDDAFGVLAKSLNEVFNDDFFAPIKSSTMSFRTDIRESEQAYLIEAELPG 60 MFDL+PF +R DD F + K+ NE+F+ + AP ++ SFRTDI E E AYL+EAELPG Sbjct: 1 MFDLMPF-RRNDDVFERMMKTFNEMFDANALAPFANAN-SFRTDITEKEDAYLVEAELPG 58 Query: 61 FKKEEIDIDYASPYLTIKAVRKEENSEENKDHQXXXXXXXXXXXXXXXXXQDVAEDEIRA 120 F KE+I ID + LTI+A R + +++ H+ ++ EDEI A Sbjct: 59 FSKEDITIDVRNNELTIRAKRDQMEESKDEKHKVIRQERRYGEFVRKFYVDNINEDEISA 118 Query: 121 SLKDGLLTLSVPKQQKS--LGKRIEIQ 145 +L +G+L + +PK+ K GKRI+IQ Sbjct: 119 TLDNGVLKIHIPKKTKEGPSGKRIQIQ 145 >C3L2B5.1 C3L2B5_CLOB6 Heat shock protein Length = 146 Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 9/149 (6%) Query: 1 MFDLVPFGK----RRDDAFGVLAKSLNEVFNDDFFAPIKSSTMSFRTDIRESEQAYLIEA 56 MF+++PF K R DD F ++ FNDDFF + ++ +F D++E+++ YLIEA Sbjct: 1 MFEMMPFRKNDLARHDDFFSPFLRNF---FNDDFFTEMSNAHKNFNVDLKETDENYLIEA 57 Query: 57 ELPGFKKEEIDIDYASPYLTIKAVRKEENSEENKDHQXXXXXXXXXXXXXXXXXQDVAED 116 +LPG KKE+I ID+ + YL I A R+E S ENK D E+ Sbjct: 58 DLPGTKKEDISIDFHNNYLVINAKRQE--SVENKKENYVRRERHYGEFKRSFYIDDADEN 115 Query: 117 EIRASLKDGLLTLSVPKQQKSLGKRIEIQ 145 +I AS +G+L +++PK + KR +I+ Sbjct: 116 KIDASFNNGVLKITIPKTNQDNNKRKKIE 144 >B1QNI1.1 B1QNI1_CLOBO Heat shock protein Length = 146 Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 9/149 (6%) Query: 1 MFDLVPFGK----RRDDAFGVLAKSLNEVFNDDFFAPIKSSTMSFRTDIRESEQAYLIEA 56 MF+++PF K R DD F ++ FNDDFF + ++ +F D++E+++ YLIEA Sbjct: 1 MFEMMPFRKNDLARHDDFFSPFLRNF---FNDDFFTEMSNAHKNFNVDLKETDENYLIEA 57 Query: 57 ELPGFKKEEIDIDYASPYLTIKAVRKEENSEENKDHQXXXXXXXXXXXXXXXXXQDVAED 116 +LPG KKE+I ID+ + YL I A R+E S ENK D E+ Sbjct: 58 DLPGTKKEDISIDFHNNYLVINAKRQE--SVENKKENYVRRERHYGEFKRSFYIDDADEN 115 Query: 117 EIRASLKDGLLTLSVPKQQKSLGKRIEIQ 145 +I AS +G+L +++PK + KR +I+ Sbjct: 116 KIDASFNNGVLKITIPKTNQDNNKRKKIE 144 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.132 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 774,096,139 Number of extensions: 25632342 Number of successful extensions: 47352 Number of sequences better than 1.0e-05: 518 Number of HSP's gapped: 47742 Number of HSP's successfully gapped: 518 Length of query: 155 Length of database: 3,060,696,203 Length adjustment: 116 Effective length of query: 39 Effective length of database: 1,967,858,463 Effective search space: 76746480057 Effective search space used: 76746480057 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 126 (53.1 bits)