BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0030.p (276 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0V1D1.1 C0V1D1_9BACT Carbohydrate ABC transporter membrane prot... 263 9e-69 A5KLU5.1 A5KLU5_9FIRM Putative uncharacterized protein 166 2e-39 C0Z7S7.1 C0Z7S7_BREBN Putative sugar ABC transporter permease 162 3e-38 Q5WCD7.1 Q5WCD7_BACSK Sugar ABC transporter permease 157 7e-37 A8RYQ8.1 A8RYQ8_9CLOT Putative uncharacterized protein 156 2e-36 >C0V1D1.1 C0V1D1_9BACT Carbohydrate ABC transporter membrane protein 2, CUT1 family Length = 282 Score = 263 bits (673), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 140/254 (55%), Positives = 197/254 (77%), Gaps = 1/254 (0%) Query: 24 DFYPIVYMGMNSMRTSVDFFKNPGGFPESFNFL-NFEALYLQFDVLRLFGNTLFCVAVAF 82 D YPI +M N+++T+ ++ NP G P + +L N+ ++ +FD+ RLF NTL + +A Sbjct: 29 DLYPIFFMAANTLKTNAEYLTNPLGMPRHWTYLDNYIGMFYRFDLPRLFFNTLLYILLAA 88 Query: 83 VLTMALSIPAAYAFSKMSFPYRSALYLLMIATMTIPSITFIVPNFLLMSQWGLVDHFLSV 142 L++A+SIP A+A +KM+FP R L + +I+T+ IP+ITFI+PN+LLMS+ GLVDH+LSV Sbjct: 89 ALSLAISIPGAFALAKMNFPARGFLRMAIISTLIIPTITFIIPNYLLMSKLGLVDHYLSV 148 Query: 143 ILMWAITSISSNVFLLTSQMRGIPNEILEASQIDGIGYFQTLWRLIIPLSVPGIMTLAIF 202 +L+W ITS+ +FLL++ MRGIPNE+LEA+++DG G+ QTL L++PLSVPGI+T+ IF Sbjct: 149 VLLWGITSVPGTIFLLSAIMRGIPNEVLEAAKVDGAGFLQTLLWLVMPLSVPGIITVLIF 208 Query: 203 NSTVWWNDLFTPLIFLQSDELKTMTVAVATILKRFDTDYPLLLAGLFMTSLPPMLIYIGL 262 N T WWNDL PLIFLQSD T+TVAVATI+ R+ +DYPLL+ GL + S+PPM IYI + Sbjct: 209 NCTGWWNDLLLPLIFLQSDNKMTITVAVATIVGRYSSDYPLLITGLLLASIPPMGIYILM 268 Query: 263 QKYIRKGLVTGSVK 276 Q+YIR+GLV GS+K Sbjct: 269 QRYIRQGLVIGSIK 282 >A5KLU5.1 A5KLU5_9FIRM Putative uncharacterized protein Length = 274 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 152/251 (60%) Query: 26 YPIVYMGMNSMRTSVDFFKNPGGFPESFNFLNFEALYLQFDVLRLFGNTLFCVAVAFVLT 85 +P+ +M NS +T ++ N G P++F NF + + F N+L A +T Sbjct: 23 FPLYFMTANSFKTHEEYVNNMAGLPQTFTVQNFVEAFRGKPFGQWFMNSLILTVAAVFIT 82 Query: 86 MALSIPAAYAFSKMSFPYRSALYLLMIATMTIPSITFIVPNFLLMSQWGLVDHFLSVILM 145 +++ A YAF+KM F + L+ +++ M++P + I+P F ++ GLV+ +SVIL+ Sbjct: 83 GIIALLAGYAFAKMRFKGKKVLFNMIVPLMSVPPVVMIIPQFRIIKILGLVNTRVSVILI 142 Query: 146 WAITSISSNVFLLTSQMRGIPNEILEASQIDGIGYFQTLWRLIIPLSVPGIMTLAIFNST 205 + + ++L+ + M+ +P+ +LEA++IDG + L +++IPLSVP ++T ++ N Sbjct: 143 YIGIMLPMTIYLMRNFMKTVPDSLLEAAEIDGCSKRKALTKIMIPLSVPALITSSLVNLV 202 Query: 206 VWWNDLFTPLIFLQSDELKTMTVAVATILKRFDTDYPLLLAGLFMTSLPPMLIYIGLQKY 265 WN+L L+FLQ +EL+T+ V + RF + P+++AGL + ++P +LIYI QKY Sbjct: 203 WVWNELLISLVFLQKEELRTLMVGITLFKGRFTLNIPVIMAGLVIATVPIVLIYIFAQKY 262 Query: 266 IRKGLVTGSVK 276 + +G++ GSVK Sbjct: 263 LVEGMLAGSVK 273 >C0Z7S7.1 C0Z7S7_BREBN Putative sugar ABC transporter permease Length = 274 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 147/250 (58%) Query: 27 PIVYMGMNSMRTSVDFFKNPGGFPESFNFLNFEALYLQFDVLRLFGNTLFCVAVAFVLTM 86 PIV M +S++T+ + F +P P++F+ ++ L+ N++F A++ +L Sbjct: 25 PIVLMISSSLKTNREIFASPLSLPKTFSLDTYKKLWEAVPFADFLWNSVFVSALSVLLIT 84 Query: 87 ALSIPAAYAFSKMSFPYRSALYLLMIATMTIPSITFIVPNFLLMSQWGLVDHFLSVILMW 146 S AA+ S+ SF + + LY I + IP IVP FLLM GL++ S+IL++ Sbjct: 85 VFSAMAAFYLSRFSFTWTAGLYFFFIIGLMIPIKLGIVPLFLLMKNLGLLNSLWSLILIY 144 Query: 147 AITSISSNVFLLTSQMRGIPNEILEASQIDGIGYFQTLWRLIIPLSVPGIMTLAIFNSTV 206 + I +VF+LT R +P E+ EA++IDG +FQ WR+++PL P + T+ I N Sbjct: 145 TASGIPISVFILTGFFRTLPIELEEAARIDGCSHFQVFWRILLPLIRPALATVVIINFIH 204 Query: 207 WWNDLFTPLIFLQSDELKTMTVAVATILKRFDTDYPLLLAGLFMTSLPPMLIYIGLQKYI 266 WND F PLIF+Q + LKT+ V + + ++TD+ LL AGL +++LP +++++ + Sbjct: 205 AWNDFFFPLIFIQEESLKTIPVGMMVLFGEYETDWSLLFAGLTLSALPMIIVFLLASRQF 264 Query: 267 RKGLVTGSVK 276 +GL G+VK Sbjct: 265 MEGLTAGAVK 274 >Q5WCD7.1 Q5WCD7_BACSK Sugar ABC transporter permease Length = 269 Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 152/251 (60%), Gaps = 3/251 (1%) Query: 27 PIVYMGMNSMRTSVDFFKNPGG-FPESFNFLNFEALYLQFDVLRLFGNTLFCVAVAFVLT 85 P ++M S++T ++ + P +PE++ F NF ++ D LR + NT+F + Sbjct: 20 PFLWMVTTSLKTYLESMQIPPTIWPETWRFDNFARVFESADFLRYYANTIFITVLRTGAQ 79 Query: 86 MALSIPAAYAFSKMSFPYRSALYLLMIATMTIPSITFIVPNFLLMSQWGLVDHFLSVILM 145 + L AAYAF++++FP+++ L+LLM++ + +P ++PN+ L++Q G +D F ++I+ Sbjct: 80 LFLCSMAAYAFARLNFPFKNTLFLLMLSVLMVPMQVILIPNYALLAQLGWIDTFYALIVP 139 Query: 146 WAITSISSNVFLLTSQMRGIPNEILEASQIDGIGYFQTLWRLIIPLSVPGIMTLAIFNST 205 ++ VFLL GIP E+ EA+ +DG ++ WR+I+P + P ++ LAIF Sbjct: 140 GMFSAF--GVFLLRQFFMGIPKELDEAAIMDGCTHWGIYWRIILPNAKPALVALAIFTVL 197 Query: 206 VWWNDLFTPLIFLQSDELKTMTVAVATILKRFDTDYPLLLAGLFMTSLPPMLIYIGLQKY 265 WND PL+ S +++ ++V +A ++ T+YPLL+A M+++P +L+++ LQK+ Sbjct: 198 AAWNDFLWPLVMTNSADMRVLSVGIANFEGQYSTEYPLLMAAALMSTVPMLLMFLFLQKH 257 Query: 266 IRKGLVTGSVK 276 + G+ G V+ Sbjct: 258 LIAGIALGGVR 268 >A8RYQ8.1 A8RYQ8_9CLOT Putative uncharacterized protein Length = 275 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 87/251 (34%), Positives = 144/251 (57%), Gaps = 3/251 (1%) Query: 27 PIVYMGMNSMRTSVDFFKNPGG-FPESFNFLNFEALYLQFDVLRLFGNTLFCVAVAFVLT 85 P +M + S++TS + F P FP+ F ++N++ ++ + +L F NT +L Sbjct: 26 PFGWMLLASVKTSNEVFSIPMKLFPKEFQWVNYQTIWDKIPLLVFFKNTFKIAVCTTLLQ 85 Query: 86 MALSIPAAYAFSKMSFPYRSALYLLMIATMTIPSITFIVPNFLLMSQWGLVDHFLSVILM 145 + S AAY FSK+ F R L+L+ + T +P ++VP F L+S+ GL D L +ILM Sbjct: 86 VLTSCFAAYGFSKVEFKGRDFLFLVSVTTFAVPWQAYMVPQFALISRMGLTDSHLGLILM 145 Query: 146 WAITSISSNVFLLTSQMRGIPNEILEASQIDGIGYFQTLWRLIIPLSVPGIMTLAIFNST 205 A + VFL+ M G+PNE+LEA++IDG+ + ++ +PL PGI TL IF Sbjct: 146 QAFSGF--GVFLIRQFMIGVPNELLEAARIDGLSEYGIFAKIALPLVKPGIATLVIFTFV 203 Query: 206 VWWNDLFTPLIFLQSDELKTMTVAVATILKRFDTDYPLLLAGLFMTSLPPMLIYIGLQKY 265 WND PLI+L S +LKT+ + + + ++ DY L++A + +P +++++ QK+ Sbjct: 204 NIWNDFMGPLIYLNSTKLKTIQLGIRMFISQYGADYALIMAASVCSLVPVLIVFMVCQKW 263 Query: 266 IRKGLVTGSVK 276 +G+ G VK Sbjct: 264 FVEGITAGGVK 274 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.142 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,473,585,800 Number of extensions: 56763494 Number of successful extensions: 209988 Number of sequences better than 1.0e-05: 6181 Number of HSP's gapped: 204665 Number of HSP's successfully gapped: 6181 Length of query: 276 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 142 Effective length of database: 1,798,280,193 Effective search space: 255355787406 Effective search space used: 255355787406 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)