BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0029.p (290 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0V1D0.1 C0V1D0_9BACT Carbohydrate ABC transporter membrane prot... 293 2e-77 C5BV19.1 C5BV19_9MICO Binding-protein-dependent transport system... 158 5e-37 Q8G7Q8.1 Q8G7Q8_BIFLO Sugar permease of ABC transporter system 133 2e-29 C2GWF9.1 C2GWF9_BIFLO Sugar ABC superfamily ATP binding cassette... 133 2e-29 B3DPD5.1 B3DPD5_BIFLD MalF-type ABC sugar transport systems perm... 133 2e-29 >C0V1D0.1 C0V1D0_9BACT Carbohydrate ABC transporter membrane protein 1, CUT1 family Length = 296 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 146/285 (51%), Positives = 190/285 (66%), Gaps = 1/285 (0%) Query: 6 KQIWSGYLSLAPAFLALAVFIFYPMVNTFLHSFTKWDGNTARWIGLSNYKFIFTNGELWT 65 ++ + YL+L P+ ++ + ++YP +N+ HSFT+WDG + WIGL NY I +NG+LW Sbjct: 12 REAITAYLALLPSLASIGLLVWYPFINSIYHSFTRWDGYNSSWIGLHNYIDIISNGDLWM 71 Query: 66 LLRNNAIFXXXXXXXXXXXXXXXXXXFEQMPGWRFFRSLYYIPTILSSVVVGLLMKSMFS 125 LLR NA+F +EQ+PGW FRS+YY+PTILS+ VVG+LMK+MFS Sbjct: 72 LLRTNAVFLLSVPGILLISLVLSVLLYEQVPGWWLFRSVYYLPTILSAAVVGMLMKTMFS 131 Query: 126 PSGVVNQWIGALGLPGGDTEWLAYTPTAFMVLIFCFYWQTXXXXXXXXXXXXXXXXPEIF 185 P G VNQ + LGL TEWL+ TPTAFMVLI FYWQT E+F Sbjct: 132 PVGAVNQLLKDLGLAFLTTEWLSSTPTAFMVLILAFYWQTLGQGVLIFLSGLANVSTELF 191 Query: 186 ESASIDGAGWWQRLFHIVIPSLVPTIAYFTVTNVIYCFIGLFSLVYAVTRGGPGLETTPI 245 E+A IDGA WWQR + + +P LVPTIAYF + NVI+ F+GLF+LVY VT GGPG TTPI Sbjct: 192 EAARIDGASWWQRFWKVTLPLLVPTIAYFMIINVIWIFVGLFALVYTVTGGGPGYSTTPI 251 Query: 246 DYMIYIKAFQSPDQLGYASALSIVLFAIVLFVSWLQLRLSSRFEN 290 DYMIY+KAFQ D +GYASAL+++LF IV VS +QL++ + Sbjct: 252 DYMIYLKAFQVGD-MGYASALAVILFVIVAIVSGVQLKIFDKLTT 295 >C5BV19.1 C5BV19_9MICO Binding-protein-dependent transport systems inner membrane component Length = 311 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 90/290 (31%), Positives = 149/290 (51%), Gaps = 5/290 (1%) Query: 1 MHYRTKQIWSGYLSLAPAFLALAVFIFYPMVNTFLHSFTKWDGNTARWIGLSNYKFIFTN 60 + R + I G ++ PAFL + F+ YP++ SF +G W+GL+NY I + Sbjct: 26 LARRGRMI--GLAAVLPAFLVVVGFMIYPVLFALYISFNDSNGLRFDWVGLANYLDILAD 83 Query: 61 GELWTLLRNNAIFXXXXXXXXXXXXXXXXXXFEQMPGWRFFRSLYYIPTILSSVVVGLLM 120 ++ + N F FE++ GWR FR L+++P +LS+ V+G++ Sbjct: 84 PQVHQIFITNLKFLISVPLVIFAALVVSILLFERIRGWRAFRVLFFLPNVLSAAVIGIMF 143 Query: 121 KSMFSPSGVVNQWIGALGLPGGDTEWLAYTPTAFMVLIFCFYWQTXXXXXXXXXXXXXXX 180 KS+F +G + ALG G + A V++ W Sbjct: 144 KSVFGYNGPFMAALEALG--GERIDPFVDGNLAIAVIVLALVWSGFGYQSLLLLSGLTAI 201 Query: 181 XPEIFESASIDGAGWWQRLFHIVIPSLVPTIAYFTVTNVIYCFIGLFSLVYAVTRGGPGL 240 P +FE+A++DGAGWW RL+HI +P++ + + + NV+Y F LF V+ +T GGPG Sbjct: 202 DPAVFEAAALDGAGWWTRLWHITLPNIRRVLGFVFIINVLYTFSSLFGFVFVMTAGGPGF 261 Query: 241 ETTPIDYMIYIKAFQSPDQLGYASALSIVLFAIVLFVSWLQLRLSSRFEN 290 ETT +DY++Y++AF S LG +AL+++LF + ++ +Q R E+ Sbjct: 262 ETTTLDYLVYLRAF-STSNLGSGAALAVLLFMFIGLLTLVQARFFKLSED 310 >Q8G7Q8.1 Q8G7Q8_BIFLO Sugar permease of ABC transporter system Length = 317 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 146/295 (49%), Gaps = 11/295 (3%) Query: 4 RTKQIWSGYLSLAPAFLALAVFIFYPMVNTFLHSFTKWDGNT-----ARWIGLSNYKFIF 58 + + + +G L APA + LA+F+FYP + TF+ S T N+ A++IG NY +F Sbjct: 22 QARNLRTGVLFTAPALIVLAIFVFYPAIQTFITSLTNGRINSNARRPAKFIGFQNYITLF 81 Query: 59 TNGELWTLLRNNAIFXXXXXXXXXXXXXXXXXXF--EQMPGWRFFRSLYYIPTILSSVVV 116 + + WT ++N ++ + + FFR+ ++P ++S V Sbjct: 82 QSQDFWTDVKNTLVYAVLYAPIVVIIALAFALLLNRKDLKFVGFFRTCMFLPFVISLTVA 141 Query: 117 GLLMKSMFSPS-GVVNQWIGALGLPGGDTEWLAYTPTAFMVLIFCFYWQTXXXXXXXXXX 175 + + + SPS G++ W+ LG P + L T+ ++F W+ Sbjct: 142 AIAWQFILSPSLGLIPYWVSLLGGPS-HLDLLGTRETSMATIVFITVWKNFGYFMVIFLA 200 Query: 176 XXXXXXPEIFESASIDGAGWWQRLFHIVIPSLVPTIAYFTVTNVIYCFIGLFSLVYAVTR 235 E++E+AS+DGA WQ+ +I +P+L PT Y + +I F +F V+ +T Sbjct: 201 GLQGISAELYEAASLDGASAWQKFRYITLPALRPTFNYVVIFGLIGSF-QVFDQVFILTS 259 Query: 236 GGPGLETTPIDYMIYIKAFQSPDQLGYASALSIVLFAIVLFVSWLQLRLSSRFEN 290 GGP T I Y IY +AF + +LGYASALS VL + L V +QL +++ E Sbjct: 260 GGPARSTETIVYRIYTEAFGN-GKLGYASALSYVLLIMTLIVGLIQLYTNNKHEK 313 >C2GWF9.1 C2GWF9_BIFLO Sugar ABC superfamily ATP binding cassette transporter, membrane protein Length = 317 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 146/295 (49%), Gaps = 11/295 (3%) Query: 4 RTKQIWSGYLSLAPAFLALAVFIFYPMVNTFLHSFTKWDGNT-----ARWIGLSNYKFIF 58 + + + +G L APA + LA+F+FYP + TF+ S T N+ A++IG NY +F Sbjct: 22 QARNLRTGVLFTAPALIVLAIFVFYPAIQTFITSLTNGRINSNARRPAKFIGFQNYISLF 81 Query: 59 TNGELWTLLRNNAIFXXXXXXXXXXXXXXXXXXF--EQMPGWRFFRSLYYIPTILSSVVV 116 + + WT ++N ++ + + FFR+ ++P ++S V Sbjct: 82 QSQDFWTDVKNTLVYAVLYAPIVVIIALAFALLLNRKDLKFVGFFRTCMFLPFVISLTVA 141 Query: 117 GLLMKSMFSPS-GVVNQWIGALGLPGGDTEWLAYTPTAFMVLIFCFYWQTXXXXXXXXXX 175 + + + SPS G++ W+ LG P + L T+ ++F W+ Sbjct: 142 AIAWQFILSPSLGLIPYWVSLLGGPS-HLDLLGTRETSMATIVFITVWKNFGYFMVIFLA 200 Query: 176 XXXXXXPEIFESASIDGAGWWQRLFHIVIPSLVPTIAYFTVTNVIYCFIGLFSLVYAVTR 235 E++E+AS+DGA WQ+ +I +P+L PT Y + +I F +F V+ +T Sbjct: 201 GLQGISAELYEAASLDGASAWQKFRYITLPALRPTFNYVVIFGLIGSF-QVFDQVFILTS 259 Query: 236 GGPGLETTPIDYMIYIKAFQSPDQLGYASALSIVLFAIVLFVSWLQLRLSSRFEN 290 GGP T I Y IY +AF + +LGYASALS VL + L V +QL +++ E Sbjct: 260 GGPARSTETIVYRIYTEAFGN-GKLGYASALSYVLLIMTLIVGLIQLYTNNKHEK 313 >B3DPD5.1 B3DPD5_BIFLD MalF-type ABC sugar transport systems permease component Length = 317 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 146/295 (49%), Gaps = 11/295 (3%) Query: 4 RTKQIWSGYLSLAPAFLALAVFIFYPMVNTFLHSFTKWDGNT-----ARWIGLSNYKFIF 58 + + + +G L APA + LA+F+FYP + TF+ S T N+ A++IG NY +F Sbjct: 22 QARNLRTGVLFTAPALIILAIFVFYPAIQTFITSLTNGRINSNARRPAKFIGFQNYITLF 81 Query: 59 TNGELWTLLRNNAIFXXXXXXXXXXXXXXXXXXF--EQMPGWRFFRSLYYIPTILSSVVV 116 + + WT ++N ++ + + FFR+ ++P ++S V Sbjct: 82 QSQDFWTDVKNTLVYAVLYAPIVVIIALAFALLLNRKDLKFVGFFRTCMFLPFVISLTVA 141 Query: 117 GLLMKSMFSPS-GVVNQWIGALGLPGGDTEWLAYTPTAFMVLIFCFYWQTXXXXXXXXXX 175 + + + SPS G++ W+ LG P + L T+ ++F W+ Sbjct: 142 AIAWQFILSPSLGLIPYWVSLLGGPS-HLDLLGTRETSMATIVFITVWKNFGYFMVIFLA 200 Query: 176 XXXXXXPEIFESASIDGAGWWQRLFHIVIPSLVPTIAYFTVTNVIYCFIGLFSLVYAVTR 235 E++E+AS+DGA WQ+ +I +P+L PT Y + +I F +F V+ +T Sbjct: 201 GLQGISAELYEAASLDGASAWQKFRYITLPALRPTFNYVVIFGLIGSF-QVFDQVFILTS 259 Query: 236 GGPGLETTPIDYMIYIKAFQSPDQLGYASALSIVLFAIVLFVSWLQLRLSSRFEN 290 GGP T I Y IY +AF + +LGYASALS VL + L V +QL +++ E Sbjct: 260 GGPARSTETIVYRIYTEAFGN-GKLGYASALSYVLLIMTLIVGLIQLYTNNKHEK 313 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.474 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,665,216,552 Number of extensions: 62001868 Number of successful extensions: 199746 Number of sequences better than 1.0e-05: 4871 Number of HSP's gapped: 190044 Number of HSP's successfully gapped: 4900 Length of query: 290 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 156 Effective length of database: 1,798,280,193 Effective search space: 280531710108 Effective search space used: 280531710108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)