BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0023.p (341 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DCI6.1 B1DCI6_9BACL Helix-turn-helix type 11 domain protein 388 e-106 B3K9A7.1 B3K9A7_9BACI Helix-turn-helix type 11 domain protein 387 e-105 Q9KBN6.1 Q9KBN6_BACHD BH1889 protein 374 e-102 C0ZDF9.1 C0ZDF9_BREBN Putative transcriptional regulator 365 3e-99 Q65MX4.1 Q65MX4_BACLD Putative uncharacterized protein 330 2e-88 >B1DCI6.1 B1DCI6_9BACL Helix-turn-helix type 11 domain protein Length = 314 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 196/342 (57%), Positives = 239/342 (69%), Gaps = 29/342 (8%) Query: 1 MSKSKRLLDLMMTVNRKRKFTVKELAGEFGVSPRTILRDLQELGELGVPLYSEVGPHGGY 60 M KSKRL++LMMTVNRKR+F V+ELA EFGVS RTILRDLQEL ELGVPLYSEVGPHGGY Sbjct: 1 MPKSKRLMELMMTVNRKRRFKVQELADEFGVSKRTILRDLQELSELGVPLYSEVGPHGGY 60 Query: 61 QVLNERILPPIAFTEEEAVAIFFASHALRHYKYLPFKEESVAALQKFYHYMSGDVRDRID 120 QVL ER+LPPIAFTEEEAVA+FFA HALRHY LPF+ ESV+AL KFY +M GDVRDRID Sbjct: 61 QVLRERVLPPIAFTEEEAVAMFFAVHALRHYSSLPFETESVSALNKFYLHMPGDVRDRID 120 Query: 121 EMKHRIDFVTPARQAEFPYLAILLEAATGQKVLQIDYETKGKRMD-RAIQPIGIYASNGL 179 MKHR+DF+TP R+ + P LA+LL+AA QKVL I+YETKG R IQP+ IYA NGL Sbjct: 121 SMKHRVDFITPTRRGDAPCLAVLLDAAVHQKVLDIEYETKGSEAGCRKIQPVCIYAHNGL 180 Query: 180 WYCPAYCFLRGGIRVFRCDRIHTADYAVSGPAPLDLRHVLLGNKESCSNLEQAGNTGLQQ 239 WYC A+CFLR G RVFRCDRI TA SG +L + L KE+ + + Sbjct: 181 WYCTAFCFLREGFRVFRCDRIRTASEDTSGTEKRELGEIRLSRKEAV----------MPE 230 Query: 240 EPGLEISKQRERATSKKNERTRLYIGLTDEGVQACEAELWSSSLLHIREDGTGWLEGDIP 299 P RL + L+ GVQ CEAELW + +L +RE+G+G ++ D+ Sbjct: 231 NP------------------VRLQVELSRAGVQRCEAELWLAPMLQVREEGSGSIDADVS 272 Query: 300 HKDLPFFARFVIGLCNEAAVKEPQELVRAVKELLAGMLAKYK 341 D+ F+ F+IGL EA +K P+EL AV++ L G+L +Y+ Sbjct: 273 RGDMSFYTEFLIGLGYEATLKGPEELREAVRDRLTGLLDRYR 314 >B3K9A7.1 B3K9A7_9BACI Helix-turn-helix type 11 domain protein Length = 315 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 196/340 (57%), Positives = 241/340 (70%), Gaps = 26/340 (7%) Query: 1 MSKSKRLLDLMMTVNRKRKFTVKELAGEFGVSPRTILRDLQELGELGVPLYSEVGPHGGY 60 MSKSKRL++LMMTVNR RKFTV+ELA +FGVS RTILRDLQEL ELGVPLYSEVGPHGGY Sbjct: 1 MSKSKRLIELMMTVNRMRKFTVRELADQFGVSSRTILRDLQELSELGVPLYSEVGPHGGY 60 Query: 61 QVLNERILPPIAFTEEEAVAIFFASHALRHYKYLPFKEESVAALQKFYHYMSGDVRDRID 120 QVL ER+LPPIAF+EEEAVA+FFASHALRHY +LPF+ ES ALQKFY+YM GDVRDRID Sbjct: 61 QVLKERVLPPIAFSEEEAVAMFFASHALRHYLFLPFEAESSTALQKFYYYMPGDVRDRID 120 Query: 121 EMKHRIDFVTPARQAEFPYLAILLEAATGQKVLQIDYETKGKRMDRAIQPIGIYASNGLW 180 +MK+R+DF+T RQ + L LL+AA Q+V+ + YE++ R+IQP+GIYASNG W Sbjct: 121 QMKNRVDFLTHTRQQKAESLGALLDAAVDQRVVTVLYESREGYAARSIQPVGIYASNGFW 180 Query: 181 YCPAYCFLRGGIRVFRCDRIHTADYAVSGPAPLDLRHVLLGNKESCSNLEQAGNTGLQQE 240 YCPAYCFLR R+FRCDR+ + +G P D RH+ LGN Sbjct: 181 YCPAYCFLRDDFRLFRCDRMQSVAEDATGIEPRDHRHIHLGN------------------ 222 Query: 241 PGLEISKQRERATSKKNERTRLYIGLTDEGVQACEAELWSSSLLHIREDGTGWLEGDIPH 300 RE T +K+ R+ + L+ EGVQ CE+EL + R DG+G L+ ++P Sbjct: 223 -------WREYGT-EKSVYVRMVVDLSREGVQRCESELCPVPHIAKRPDGSGRLDQNVPA 274 Query: 301 KDLPFFARFVIGLCNEAAVKEPQELVRAVKELLAGMLAKY 340 +L +FA+F IGL NEA VK PQELV +K +LA M+AKY Sbjct: 275 SELLYFAKFFIGLGNEATVKAPQELVVRIKGMLAEMMAKY 314 >Q9KBN6.1 Q9KBN6_BACHD BH1889 protein Length = 325 Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust. Identities = 185/343 (53%), Positives = 231/343 (67%), Gaps = 31/343 (9%) Query: 1 MSKSKRLLDLMMTVNRKRKFTVKELAGEFGVSPRTILRDLQELGELGVPLYSEVGPHGGY 60 MSK+KRL++LMM +NRKR+FTVKELA EF VS RTILRDLQEL ELGVPLYSEVGPHGGY Sbjct: 1 MSKAKRLMELMMVINRKRRFTVKELAEEFSVSSRTILRDLQELSELGVPLYSEVGPHGGY 60 Query: 61 QVLNERILPPIAFTEEEAVAIFFASHALRHYKYLPFKEESVAALQKFYHYMSGDVRDRID 120 +VLNER+LPPIAFTEEEAVAIFF HALRH+ LPF+ ES + KFY YM DV++RID Sbjct: 61 EVLNERVLPPIAFTEEEAVAIFFTVHALRHFSALPFQAESSSVNHKFYSYMPEDVKERID 120 Query: 121 EMKHRIDFVTPARQAEFPYLAILLEAATGQKVLQIDYETKGKRMDRAIQPIGIYASNGLW 180 ++K+R DF TP R PYL LL+AA Q V+ I+YET ++ R IQPIG+YA +G W Sbjct: 121 QLKNRFDFETPMRPLATPYLPTLLDAAIKQNVVSIEYETSQEKTKREIQPIGVYARDGFW 180 Query: 181 YCPAYCFLRGGIRVFRCDRIHTADYAVSGPAPLDLRHVLLGNKESCSNLEQAGNTGLQQE 240 YCP+YCFLR +R+FRCDRI + PL+ RHV LGN +S Sbjct: 181 YCPSYCFLREDMRLFRCDRITYVTEQTTN-NPLNFRHVHLGNWQSY-------------- 225 Query: 241 PGLEISKQRERATSKKNERTRL--YIGLTDEGVQACEAELWSSSLLHIREDGTGWLEGDI 298 K ER L Y+ L+ +GVQ C AE W LHIR+DG+GWLEG Sbjct: 226 --------------MKQERNVLDFYVELSQDGVQRCVAEQWLKPHLHIRQDGSGWLEGPF 271 Query: 299 PHKDLPFFARFVIGLCNEAAVKEPQELVRAVKELLAGMLAKYK 341 P ++P+F+ + IG ++A VK+P +LV +K+ L +L+KY Sbjct: 272 PESEVPYFSYYFIGFGHDATVKQPVQLVTLIKKSLRELLSKYN 314 >C0ZDF9.1 C0ZDF9_BREBN Putative transcriptional regulator Length = 315 Score = 365 bits (937), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 178/343 (51%), Positives = 233/343 (67%), Gaps = 30/343 (8%) Query: 1 MSKSKRLLDLMMTVNRKRKFTVKELAGEFGVSPRTILRDLQELGELGVPLYSEVGPHGGY 60 M+KSKRL+++MM VN+K+ F K+LA EFGVS RTI+RD+QEL LGVP YSEVGP+GGY Sbjct: 1 MAKSKRLIEIMMAVNKKKSFNAKQLASEFGVSTRTIMRDMQELSALGVPFYSEVGPNGGY 60 Query: 61 QVLNERILPPIAFTEEEAVAIFFASHALRHYKYLPFKEESVAALQKFYHYMSGDVRDRID 120 ++LNER+LPP+AFTE EA+A+FFASHALRHY LPF+ E+ + L+KFY YMS D+RDRID Sbjct: 61 KMLNERMLPPVAFTEGEALAVFFASHALRHYANLPFEAETDSVLRKFYSYMSEDIRDRID 120 Query: 121 EMKHRIDFVTPARQAEFPYLAILLEAATGQKVLQIDYETKGKRMDRAIQPIGIYASNGLW 180 M+ R D VTP R PYL++LL+AA QKV++I+YE+K + R +QPIGIYASNG W Sbjct: 121 RMRERFDLVTPMRHTSTPYLSLLLDAAIDQKVVRIEYESKQDKRLRDVQPIGIYASNGFW 180 Query: 181 YCPAYCFLRGGIRVFRCDRIHTADYAVSGPAPLDLRHVLLGNKESCSNLEQAGNTGLQQE 240 YCPAYCF R R+FRCDR+ + + + +DL V GN +S ++ Sbjct: 181 YCPAYCFHRRDFRLFRCDRVRSVE--LIERKAVDLTQVHTGNWDSYIE---------EES 229 Query: 241 PGLEISKQRERATSKKNERTRLYIGLTDEGVQACEAELWSSSLL--HIREDGTGWLEGDI 298 P +E LY+ LT GVQ CE+ELW + + H+REDGTGWL I Sbjct: 230 PAME-----------------LYVELTATGVQRCESELWPAHKMQIHVREDGTGWLGHRI 272 Query: 299 PHKDLPFFARFVIGLCNEAAVKEPQELVRAVKELLAGMLAKYK 341 P LPFF F IGL +A VK P EL+ ++E+L ++A+Y+ Sbjct: 273 PTSSLPFFGHFFIGLGTDAKVKAPDELIHVMREMLDKLMAQYQ 315 >Q65MX4.1 Q65MX4_BACLD Putative uncharacterized protein Length = 315 Score = 330 bits (845), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 173/341 (50%), Positives = 219/341 (64%), Gaps = 28/341 (8%) Query: 1 MSKSKRLLDLMMTVNRKRKFTVKELAGEFGVSPRTILRDLQELGELGVPLYSEVGPHGGY 60 MSK+KRL +++M VNRK++FTV ELA EFGVS RT+LRDLQEL E+GVPLYSE GPHGGY Sbjct: 1 MSKAKRLNEMIMMVNRKKRFTVGELAREFGVSKRTVLRDLQELSEMGVPLYSETGPHGGY 60 Query: 61 QVLNERILPPIAFTEEEAVAIFFASHALRHYKYLPFKEESVAALQKFYHYMSGDVRDRID 120 QVLNERILPPIAF+E EA++IFFA AL+HY LPF + + +KFY +SGD+RD ID Sbjct: 61 QVLNERILPPIAFSENEAISIFFAIDALKHYISLPFDAQYASIKKKFYLNLSGDIRDAID 120 Query: 121 EMKHRIDFVTPARQA-EFPYLAILLEAATGQKVLQIDYETKGKRMDRAIQPIGIYASNGL 179 MK R+ F TP Q + P L +LLEAA QKVL I+YE G R+IQPIGIYA+ G Sbjct: 121 SMKDRVAFYTPYEQTDDIPVLKVLLEAAVQQKVLIIEYEANGASSKRSIQPIGIYANQGK 180 Query: 180 WYCPAYCFLRGGIRVFRCDRIHTADYAVSGPAPLDLRHVLLGNKESCSNLEQAGNTGLQQ 239 WYCPAYCFLR R+FRCDRI A+ AP+DL + L N+ S Sbjct: 181 WYCPAYCFLRKDYRIFRCDRIKRAELD-EHKAPIDLSGLNLKNRFS-------------- 225 Query: 240 EPGLEISKQRERATSKKNERTRLYIGLTDEGVQACEAELWSSSLLHIREDGTGWLEGDIP 299 A S+ E L LT +GV+ + W LH+REDG+G L+G+I Sbjct: 226 ------------ALSRPRETLELSAELTKKGVERHGSLKWPHLELHVREDGSGVLKGEIA 273 Query: 300 HKDLPFFARFVIGLCNEAAVKEPQELVRAVKELLAGMLAKY 340 KD+ FFA + I EA +++P +L+ +K L+ ML +Y Sbjct: 274 PKDIDFFADYFISFGREAVIQKPSKLIERMKRTLSDMLKQY 314 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,022,072,789 Number of extensions: 84486698 Number of successful extensions: 198386 Number of sequences better than 1.0e-05: 1069 Number of HSP's gapped: 197437 Number of HSP's successfully gapped: 1070 Length of query: 341 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 205 Effective length of database: 1,779,438,163 Effective search space: 364784823415 Effective search space used: 364784823415 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)