BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0564.0019.p
         (146 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DI56.1 B1DI56_9BACL Putative uncharacterized protein                147   2e-34

>B1DI56.1 B1DI56_9BACL Putative uncharacterized protein
          Length = 154

 Score =  147 bits (372), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/142 (50%), Positives = 92/142 (64%)

Query: 1   VTPASSKSHIIHRFFLTSAGGRLGIDFRYGPKQLEDLEKARALIEHSIDLYFEEETIAQA 60
           VTP  SK+HI + F L   G +L IDF Y PK L+D E+A  LI   I+ Y E     + 
Sbjct: 12  VTPVCSKTHIAYSFHLDRQGDKLWIDFAYEPKNLDDREQAHQLIAAGINKYTEPAQRGRM 71

Query: 61  KAHFKSYLPLNNLITVSVDSPNGHLGAAHRHDPEQVLHVSRYEASPGLVCGDIVAGMWEV 120
              ++S+LPL NLITVSVD P  H GA HRHDPEQ+L +   +ASPG V G+++ G+W +
Sbjct: 72  LEKWESFLPLKNLITVSVDDPKRHRGAGHRHDPEQLLFIGGEDASPGFVSGELIGGLWRI 131

Query: 121 TLSLHAIVTDYCEYSLQIWQEE 142
           T+SLH I+TD C Y L+I  EE
Sbjct: 132 TISLHEIITDNCRYRLRIHHEE 153


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 919,399,473
Number of extensions: 34609721
Number of successful extensions: 75443
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 75443
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 3,060,696,203
Length adjustment: 109
Effective length of query: 37
Effective length of database: 2,033,805,568
Effective search space: 75250806016
Effective search space used: 75250806016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)