BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0018.p (281 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DI57.1 B1DI57_9BACL Binding-protein-dependent transport system... 375 e-102 B6A4K3.1 B6A4K3_RHILW Binding-protein-dependent transport system... 148 5e-34 Q1M956.1 Q1M956_RHIL3 Putative permease component of ABC transpo... 145 3e-33 B9K1F9.1 B9K1F9_AGRVS Spermidine/putrescine ABC transporter perm... 143 2e-32 B9K5E6.1 B9K5E6_AGRVS ABC transporter membrane spanning protein 139 2e-31 >B1DI57.1 B1DI57_9BACL Binding-protein-dependent transport systems inner membrane component Length = 281 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 191/279 (68%), Positives = 216/279 (77%) Query: 1 MSRQAKRGLLGXXXXXXXXXXXXXXXXXXXXGSLKESLTNDGGGYDLSNYKFLFTDKLMR 60 M +Q K G+LG S KESLTN GG DLSNYKFLFTDKLMR Sbjct: 2 MKKQVKMGILGLLLVIPSFLLLFLTVVIPIAVSFKESLTNKEGGMDLSNYKFLFTDKLMR 61 Query: 61 SNIIFTLEITVISSLLVLAISYVLAVYMRFNNGFAVRWIRRMYMIPIFIPTVIATYGLMQ 120 SNIIF+LE+T+IS ++VL +SY LA YMRFN G V WIR MYMIP+FIP+VIATYGL+Q Sbjct: 62 SNIIFSLEVTIISVVIVLIVSYALAAYMRFNKGKLVGWIRNMYMIPMFIPSVIATYGLIQ 121 Query: 121 LLGNHGWAARILYHLGQDSFPRIIYDMKGIIIANLWFNIPFTTMLLGSALSSVPDSVIES 180 LLGNHGW AR + G PRII+DMKGIIIANLWFNIPFTTMLLGSAL+ +PDSV+ES Sbjct: 122 LLGNHGWVARWVLLFGGSGIPRIIFDMKGIIIANLWFNIPFTTMLLGSALAGIPDSVMES 181 Query: 181 AKDVGAGRLRIFWRLILPLTYKTLLVAVTFVFMGVIGSFTAPYLVGPNAPQMLGVSMEQV 240 AKDVGAGRLRIF R I+PLTYKTLLVAVTFVFMGVIGSFTAP+L+GPNAPQMLGVSMEQ+ Sbjct: 182 AKDVGAGRLRIFTRFIVPLTYKTLLVAVTFVFMGVIGSFTAPFLLGPNAPQMLGVSMEQI 241 Query: 241 FGVFQDRQXXXXXXXXXXXXCSFIGYFYVLSMIKEEGVR 279 FGVFQ+++ CSF+GYFY+ SMIKEEG R Sbjct: 242 FGVFQEKEQASALAFFTFLLCSFMGYFYIRSMIKEEGAR 280 >B6A4K3.1 B6A4K3_RHILW Binding-protein-dependent transport systems inner membrane component Length = 296 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 133/240 (55%), Gaps = 1/240 (0%) Query: 41 DGG-GYDLSNYKFLFTDKLMRSNIIFTLEITVISSLLVLAISYVLAVYMRFNNGFAVRWI 99 DG + L++Y+F FTD N+ TL T + +L+LAI + +A+Y+RF+ G ++ Sbjct: 56 DGATAFSLASYRFFFTDGYSLGNLWLTLWTTAVCGVLLLAIGFPIALYLRFSQGRLAAYV 115 Query: 100 RRMYMIPIFIPTVIATYGLMQLLGNHGWAARILYHLGQDSFPRIIYDMKGIIIANLWFNI 159 + + + P+F+P++I Y L++ +G +G +L +G G +I +W N+ Sbjct: 116 QGLAIFPMFVPSIILAYALIRTVGPNGTVDLLLNSVGLPKLRTPYLTPWGPVIGLVWDNL 175 Query: 160 PFTTMLLGSALSSVPDSVIESAKDVGAGRLRIFWRLILPLTYKTLLVAVTFVFMGVIGSF 219 P T ++L + LSSV +S +E+A+DVGA LR+F +ILP +LLV +F +G+ +F Sbjct: 176 PLTVLMLTAGLSSVSNSAVEAARDVGARPLRVFISIILPRMGNSLLVTASFAVLGIFSAF 235 Query: 220 TAPYLVGPNAPQMLGVSMEQVFGVFQDRQXXXXXXXXXXXXCSFIGYFYVLSMIKEEGVR 279 T PY++GP +P+M+G M++ F D C G FY+ S+ + R Sbjct: 236 TLPYVLGPASPEMMGPFMQRTFADMNDPLNAMTQAVITFGFCLVFGIFYIRSIARNREAR 295 >Q1M956.1 Q1M956_RHIL3 Putative permease component of ABC transporter Length = 296 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 129/232 (55%) Query: 45 YDLSNYKFLFTDKLMRSNIIFTLEITVISSLLVLAISYVLAVYMRFNNGFAVRWIRRMYM 104 + L++Y+F FTD N+ TL T + +L+LAI +A+Y+RF+ G +++ + + Sbjct: 61 FSLASYRFFFTDSYSLGNLWLTLWTTAVCGILLLAIGLPIALYLRFSQGRLAAYVQALAI 120 Query: 105 IPIFIPTVIATYGLMQLLGNHGWAARILYHLGQDSFPRIIYDMKGIIIANLWFNIPFTTM 164 P+F+P++I Y L++ +G +G +L + G +I +W N+P T + Sbjct: 121 FPMFVPSIILAYALIRTIGPNGTVDLLLNAVSLPKLRTPYLTPWGPVIGLVWDNLPLTVL 180 Query: 165 LLGSALSSVPDSVIESAKDVGAGRLRIFWRLILPLTYKTLLVAVTFVFMGVIGSFTAPYL 224 +L + LSSV +S IE+A+DVGAG LR+F +ILP +LLV +F +G+ +FT PY+ Sbjct: 181 MLTAGLSSVSNSAIEAARDVGAGPLRVFLSIILPRMGNSLLVTASFAVLGIFSAFTLPYV 240 Query: 225 VGPNAPQMLGVSMEQVFGVFQDRQXXXXXXXXXXXXCSFIGYFYVLSMIKEE 276 +G +P+M+G M++ F D C G FY+ S+++ Sbjct: 241 LGSASPEMMGPFMQRTFADMNDPLNAMTQAVITFGFCLVFGIFYIRSIVRNR 292 >B9K1F9.1 B9K1F9_AGRVS Spermidine/putrescine ABC transporter permease protein Length = 296 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 135/240 (56%), Gaps = 2/240 (0%) Query: 43 GGYDLS--NYKFLFTDKLMRSNIIFTLEITVISSLLVLAISYVLAVYMRFNNGFAVRWIR 100 GG+ +S +Y+F F+D N+ TL T + +++L I +A+Y+RF++ +++ Sbjct: 57 GGWHVSTASYRFFFSDTYSLRNLGITLWTTAVCGVVLLLIGVPIALYLRFSSSRLAAYVQ 116 Query: 101 RMYMIPIFIPTVIATYGLMQLLGNHGWAARILYHLGQDSFPRIIYDMKGIIIANLWFNIP 160 + + P+F+P++I +Y L++ +G +G +L+ +G P G +I +W N+P Sbjct: 117 ALAIFPMFVPSIILSYALIRTIGPNGTVDILLHAVGLPKLPTPYLTPWGPVIGLVWDNLP 176 Query: 161 FTTMLLGSALSSVPDSVIESAKDVGAGRLRIFWRLILPLTYKTLLVAVTFVFMGVIGSFT 220 T ++L + LS++ ++ +E+A+D GA +++F +ILP + LVA +F +G+ +FT Sbjct: 177 LTVLMLTAGLSAISNNAVEAARDAGARPVQVFLHIILPRMANSFLVASSFAILGIFSAFT 236 Query: 221 APYLVGPNAPQMLGVSMEQVFGVFQDRQXXXXXXXXXXXXCSFIGYFYVLSMIKEEGVRR 280 PYL+GP +P+M+G M++ F D C F G FYV S+ + + R Sbjct: 237 LPYLLGPASPEMMGPFMQRTFADLNDPLNATTQAVISFGFCLFFGAFYVYSIARNQERTR 296 >B9K5E6.1 B9K5E6_AGRVS ABC transporter membrane spanning protein Length = 289 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 124/231 (53%) Query: 46 DLSNYKFLFTDKLMRSNIIFTLEITVISSLLVLAISYVLAVYMRFNNGFAVRWIRRMYMI 105 + +Y F FTD +N+ TL T +S L++AI+ +A+YMRF G I+ + + Sbjct: 55 NFDSYVFFFTDAYSLANLGRTLWTTFVSLALLIAINLPIALYMRFTRGPLASLIQGLALF 114 Query: 106 PIFIPTVIATYGLMQLLGNHGWAARILYHLGQDSFPRIIYDMKGIIIANLWFNIPFTTML 165 P+F+P +I Y L++ LG +GW +L +G + G +I LW +P T ++ Sbjct: 115 PMFVPGIIICYALIRYLGPNGWLQSLLSLIGFHHYASPYLTPWGPVIGLLWDGMPLTLLI 174 Query: 166 LGSALSSVPDSVIESAKDVGAGRLRIFWRLILPLTYKTLLVAVTFVFMGVIGSFTAPYLV 225 L S LS + D+ IE+A+DVGAGRLRI R+I+P +LL+ F+G G P+++ Sbjct: 175 LISGLSGISDASIEAARDVGAGRLRILVRIIIPQIMHSLLIVSALNFLGFFGQALMPFML 234 Query: 226 GPNAPQMLGVSMEQVFGVFQDRQXXXXXXXXXXXXCSFIGYFYVLSMIKEE 276 GP +P+M+G M + F +D CS G YV S+ ++ Sbjct: 235 GPTSPEMMGPFMLRTFASVRDPLQASTQATITFLICSLAGIAYVRSIARKP 285 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.144 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,409,733,788 Number of extensions: 53555760 Number of successful extensions: 207619 Number of sequences better than 1.0e-05: 4701 Number of HSP's gapped: 207416 Number of HSP's successfully gapped: 4701 Length of query: 281 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 147 Effective length of database: 1,798,280,193 Effective search space: 264347188371 Effective search space used: 264347188371 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)