BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0017.p (390 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DI58.1 B1DI58_9BACL Extracellular solute-binding protein family 1 551 e-155 A9U8D4.1 A9U8D4_PHYPA Predicted protein (Fragment) 469 e-130 A5CS84.1 A5CS84_CLAM3 Putative polyamine ABC transporter, substr... 211 9e-53 B0RI23.1 B0RI23_CLAMS Putative substrate-binding transport protein 204 8e-51 B9K5E5.1 B9K5E5_AGRVS Extracellular solute-binding protein 172 7e-41 >B1DI58.1 B1DI58_9BACL Extracellular solute-binding protein family 1 Length = 396 Score = 551 bits (1419), Expect = e-155, Method: Compositional matrix adjust. Identities = 255/347 (73%), Positives = 303/347 (87%) Query: 44 PAASSTEFTFYYTGSQNVDDLWKTLIPMFEAKNPDIKVNPVYVASGTAAQPTYDKIMAAK 103 P+A EF+FY+TGS+NV +LW T+IPMFE +P+IKV VY+ SGT AQPTYD+I+AAK Sbjct: 50 PSAQQVEFSFYFTGSENVKNLWDTIIPMFEKDHPNIKVKEVYIPSGTGAQPTYDRILAAK 109 Query: 104 QAGKGSGGVDLYESSIDDVTKGKNDDLWDSLSTGSIANLNNVDQQTMKDVSNLAVPYRSS 163 QAGKGSGG+DLYE + +VT+G+ DDLW++L I NL +VD TMKDVSNLA+PYRSS Sbjct: 110 QAGKGSGGIDLYEDGLSNVTQGQKDDLWETLDPAKIGNLASVDANTMKDVSNLAIPYRSS 169 Query: 164 AVVLAYNSDKVTAPPQTLDELYDWIRANPEKFAYNDPSTGGSGSSFVITSIYKFLPEEAI 223 AVVLAYNS+KV PP+TLDEL+ WI+ANPE+FAYNDPSTGG+GSSFV T++Y L E+AI Sbjct: 170 AVVLAYNSEKVQTPPKTLDELFAWIKANPERFAYNDPSTGGAGSSFVTTTLYDKLSEDAI 229 Query: 224 HNSDPSIESQWTQGFDLLKDLGKYVYGKGIYPKKNQGTLDLLASGEVDMIPAWSDMVLDQ 283 HNSDPSIE +W +GFD LK+LGKYVYGKGIYPKKNQGTLDLL SGEVDMIPAWSDM L+Q Sbjct: 230 HNSDPSIEKEWDKGFDTLKELGKYVYGKGIYPKKNQGTLDLLISGEVDMIPAWSDMALEQ 289 Query: 284 IAKGQLPASTKMQQVTPGFNGGPTYLMVPKLSDKKDAVYKFLDFTLSPEAQAEVVNKMQG 343 I GQLPA+TK+ Q+TPGFNGGPTYLMVPKLS+KKDAV +FL+F LSPEAQ+ VV KM G Sbjct: 290 IGNGQLPATTKIAQITPGFNGGPTYLMVPKLSEKKDAVNEFLNFVLSPEAQSVVVTKMHG 349 Query: 344 FPGIKLSNMPQDIQDSFKGVSEGYRTFSLGDLGKDINQRWQSEVAAQ 390 FPGI+LSNMPQDIQDSFKGV+EG+RTF++GDLG +IN+RWQS+VAAQ Sbjct: 350 FPGIQLSNMPQDIQDSFKGVAEGFRTFNIGDLGNEINKRWQSDVAAQ 396 >A9U8D4.1 A9U8D4_PHYPA Predicted protein (Fragment) Length = 285 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 223/285 (78%), Positives = 252/285 (88%) Query: 71 MFEAKNPDIKVNPVYVASGTAAQPTYDKIMAAKQAGKGSGGVDLYESSIDDVTKGKNDDL 130 MFE KNPDIKV VYV SGT AQPTYD+I+AAKQ GKGSG +DL+E + VTKG+ DDL Sbjct: 1 MFEEKNPDIKVKAVYVPSGTGAQPTYDRILAAKQTGKGSGDIDLFEDGLGVVTKGQKDDL 60 Query: 131 WDSLSTGSIANLNNVDQQTMKDVSNLAVPYRSSAVVLAYNSDKVTAPPQTLDELYDWIRA 190 WD+LST I NLNNVDQ T+ DVSNLA+PYRSSAVVLAYNS+ V P+TLD++Y+WIR+ Sbjct: 61 WDNLSTDHIPNLNNVDQNTLNDVSNLAIPYRSSAVVLAYNSETVKDVPKTLDDVYEWIRS 120 Query: 191 NPEKFAYNDPSTGGSGSSFVITSIYKFLPEEAIHNSDPSIESQWTQGFDLLKDLGKYVYG 250 +PE+FAYNDPSTGG+GSSFV TSIYKFLPE+AIHN+DPSIESQW QGF LLKDLGKY+YG Sbjct: 121 HPERFAYNDPSTGGAGSSFVTTSIYKFLPEDAIHNTDPSIESQWDQGFSLLKDLGKYMYG 180 Query: 251 KGIYPKKNQGTLDLLASGEVDMIPAWSDMVLDQIAKGQLPASTKMQQVTPGFNGGPTYLM 310 KGIYPKKNQGTLDLL SGEVDMIPAWSDMVLDQ+ KGQLP +TK+ Q+TPGFNGGPTYLM Sbjct: 181 KGIYPKKNQGTLDLLTSGEVDMIPAWSDMVLDQLDKGQLPETTKITQITPGFNGGPTYLM 240 Query: 311 VPKLSDKKDAVYKFLDFTLSPEAQAEVVNKMQGFPGIKLSNMPQD 355 VPKLS+KKDAVYKFLDF LSPEAQ VV+KM GFPGIKL+NM Q+ Sbjct: 241 VPKLSEKKDAVYKFLDFVLSPEAQNVVVDKMHGFPGIKLTNMSQE 285 >A5CS84.1 A5CS84_CLAM3 Putative polyamine ABC transporter, substrate binding protein Length = 388 Score = 211 bits (537), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 128/352 (36%), Positives = 177/352 (50%), Gaps = 11/352 (3%) Query: 46 ASSTEFTFYYTGSQNVDDLWK-TLIPMFEAKNPDIKVNPVYVASGTAAQPTYDKIMAAKQ 104 AS T F +G NV LW +IP FE NP V G T + ++ Q Sbjct: 41 ASGTARVFI-SGDTNVQALWDDGIIPAFEKANPGASVTTTLDLHGEHDAQTMATLTSSVQ 99 Query: 105 AGKGSGGVDLYESSIDDVTKGKNDDLWDSLSTGSIANLNNVDQQTMKDVSNLAVPYRSSA 164 G G DL ++ L +S +I NL V T++ +PYR+S+ Sbjct: 100 GGSDPG-YDLIDAGF--TAAAGTGGLLAPVSADTIPNLATVPDATVQSGGGFGIPYRASS 156 Query: 165 VVLAYNSDKVTAPPQTLDELYDWIRANPEKFAYNDPSTGGSGSSFVITSIYKFL----PE 220 V+LAY+S KVT PP+TL +L WIRANP +FAYN PSTGGSG +FV T + + E Sbjct: 157 VLLAYDSTKVTDPPKTLSDLLSWIRANPGQFAYNSPSTGGSGQAFVTTVLDTHVDDATRE 216 Query: 221 EAIHNSDPSIESQWTQGFDLLKDLGKYVYGKGIYPKKNQGTLDLLASGEVDMIPAWSDMV 280 + D S+E W GFD LK L +Y G+YP N LDLL +G ++M P WSD V Sbjct: 217 KMTTGYDQSLEGAWDAGFDELKGLDSSMYQGGVYPNGNNQVLDLLGTGAIEMAPVWSDQV 276 Query: 281 LDQIAKGQLPASTKMQQVT-PGFNGGPTYLMVPKLSDKKDAVYKFLDFTLSPEAQAEVVN 339 + G LPA+ K Q++ P F G +YL +PK ++ D K D+ LS E QA + + Sbjct: 277 ITAQKSGTLPATVKYAQISDPAFTGHASYLGIPKTAEHADVAQKLADYVLSAEGQAIIAS 336 Query: 340 KMQGFPGIKLSNMPQDIQDSFKGVSEG-YRTFSLGDLGKDINQRWQSEVAAQ 390 + G+P I L +P D++D F R + D++ W +V Q Sbjct: 337 TIAGYPVISLDQVPADLKDQFASADPSTLRPGYYSQMASDMSNLWDQKVPGQ 388 >B0RI23.1 B0RI23_CLAMS Putative substrate-binding transport protein Length = 388 Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 120/344 (34%), Positives = 173/344 (50%), Gaps = 10/344 (2%) Query: 54 YYTGSQNVDDLWK-TLIPMFEAKNPDIKVNPVYVASGTAAQPTYDKIMAAKQAGKGSGGV 112 + +G NV LW +IP FE NP V G T + ++ Q G G Sbjct: 48 FISGDTNVKALWDDGIIPAFEKANPGASVTTTLDLHGEHDAQTMATLTSSVQGGSDPG-Y 106 Query: 113 DLYESSIDDVTKGKNDDLWDSLSTGSIANLNNVDQQTMKDVSNLAVPYRSSAVVLAYNSD 172 DL ++ + L +S +I NL V T++ +PYR+S+V+LAY+S Sbjct: 107 DLIDAGF--TAAAGSGGLLAPVSADTIPNLATVPDSTVESGGGFGIPYRASSVLLAYDST 164 Query: 173 KVTAPPQTLDELYDWIRANPEKFAYNDPSTGGSGSSFVITSIYKFL----PEEAIHNSDP 228 KV PP+TL +L WIR NP +FAYN PSTGGSG +FV T + + E+ D Sbjct: 165 KVQTPPKTLADLLSWIRDNPGQFAYNSPSTGGSGQAFVTTVLDTHVDDATREKMTTGYDQ 224 Query: 229 SIESQWTQGFDLLKDLGKYVYGKGIYPKKNQGTLDLLASGEVDMIPAWSDMVLDQIAKGQ 288 S+ES W GFD LKDL +Y G+YP N LDLL +G ++M P WSD V+ G Sbjct: 225 SLESAWDAGFDELKDLNASMYQGGVYPNGNNQVLDLLGTGAIEMAPVWSDQVITAQKSGT 284 Query: 289 LPASTKMQQVT-PGFNGGPTYLMVPKLSDKKDAVYKFLDFTLSPEAQAEVVNKMQGFPGI 347 LP + K Q++ P F G ++L +PK ++ D K D+ LS E Q + + + G+P I Sbjct: 285 LPPTVKYAQISDPAFTGSASFLGIPKTAEHADVAQKLADYVLSAEGQGIIASTIAGYPVI 344 Query: 348 KLSNMPQDIQDSFKGVSEG-YRTFSLGDLGKDINQRWQSEVAAQ 390 L +P+D++ F R + D++ W +V Q Sbjct: 345 SLDQVPEDLKAQFASADPSTLRPGYYSKMASDMSNLWDQKVPGQ 388 >B9K5E5.1 B9K5E5_AGRVS Extracellular solute-binding protein Length = 380 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 116/348 (33%), Positives = 179/348 (51%), Gaps = 19/348 (5%) Query: 54 YYTGSQNVDDLWKTLI-PMFEAKNPDIKVNPVYVASGTAAQPTYDKIMAAKQAGKGSGGV 112 ++ NV D W +I P FEA + + +N V G+A D+ MAA +A K V Sbjct: 36 FFNSDTNVIDFWTQVIKPGFEAAHSGVTLNLVPGGGGSAMNSLADRAMAAFKAKKDPQ-V 94 Query: 113 DLYESSIDDVTKGKND-DLWDSLSTGSIANLNNVDQQTMKDVSNLAVPYRSSAVVLAYNS 171 D+ E+ G + LW S ++N + V+ ++ + L PYR S VV+ YN+ Sbjct: 95 DMLEAVTPFYPTGSLEAGLWVDFSKAGLSNYDKVNPVVVQSPALL--PYRGSQVVMMYNA 152 Query: 172 DKVTAPPQTLDELYDWIRANPEKFAYNDPSTGGSGSSFVITSIYK--------FLPEEAI 223 DKV A P T EL WI+ANP +FAY P G SG+ F+ ++ + FLPE Sbjct: 153 DKVKAVPTTFKELVAWIKANPGQFAYARPDLGDSGACFIERALQEVTGLNPDLFLPE--- 209 Query: 224 HNSDPSI-ESQWTQGFDLLKDLGKYVYGKGIYPKKNQGTLDLLASGEVDMIPAWSDMVLD 282 N P+ E +++ + LLKD+ ++ G Y N ++ +LASG V M AWSDM L Sbjct: 210 -NYTPAYAEPLFSKLWPLLKDIQPSLFNGGEYTSGNTASIQMLASGAVSMTVAWSDMALQ 268 Query: 283 QIAKGQLPASTKMQQVT-PGFNGGPTYLMVPKLSDKKDAVYKFLDFTLSPEAQAEVVNKM 341 +++G +P +T + Q+ F GG + ++VP ++ KD V K D+ ++ + Q VV + Sbjct: 269 AMSQGVVPETTSVAQLQDLAFTGGFSGIVVPTVAANKDMVLKLADYLITADIQNHVVTDL 328 Query: 342 QGFPGIKLSNMPQDIQDSFKGVSEGYRTFSLGDLGKDINQRWQSEVAA 389 GFPGIK M +++QD F V+ G + + W VA+ Sbjct: 329 GGFPGIKWEFMSKELQDKFAKVAPKSIPLFPGTWEPALFEGWYRNVAS 376 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.130 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,364,746,622 Number of extensions: 103039477 Number of successful extensions: 196474 Number of sequences better than 1.0e-05: 159 Number of HSP's gapped: 196368 Number of HSP's successfully gapped: 159 Length of query: 390 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 252 Effective length of database: 1,760,596,133 Effective search space: 443670225516 Effective search space used: 443670225516 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 132 (55.5 bits)