BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0015.p (274 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DI60.1 B1DI60_9BACL Binding-protein-dependent transport system... 402 e-110 B0RI21.1 B0RI21_CLAMS Putative inner membrane transport protein 213 2e-53 A5CS86.1 A5CS86_CLAM3 Putative polyamine ABC transporter, permea... 212 3e-53 B9K1F8.1 B9K1F8_AGRVS ABC transporter membrane spanning protein ... 183 1e-44 Q1M955.1 Q1M955_RHIL3 Putative transmembrane permease component ... 181 7e-44 >B1DI60.1 B1DI60_9BACL Binding-protein-dependent transport systems inner membrane component Length = 274 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/274 (70%), Positives = 227/274 (82%) Query: 1 MRWYLKAVGPKKIIEFLLLAAFVIFFMGPLLNLAILAFTGNWSYPDPLPREWSLKWWSFV 60 MRWY KA+G +KI+EF++L FVIFF+GPLLNLAILAFTG W+YPD LP +WS+KWW+FV Sbjct: 1 MRWYFKALGTRKIVEFIVLVIFVIFFLGPLLNLAILAFTGKWNYPDVLPTQWSMKWWAFV 60 Query: 61 LSRDGIAESIGLSFGIAAIVTAVSILLCVPAAYAFARIXXXXXXXXXXXXXXTHAFPKMG 120 ++ I +SIGLSF IAAIVT +SI+LC+PAAYAFARI THAFPKMG Sbjct: 61 FKQEDIPQSIGLSFMIAAIVTGLSIVLCIPAAYAFARIRFPFSRFFLFSFLLTHAFPKMG 120 Query: 121 LYVSIAVLFYKIGLMNTLLGVVLIHIINVLMYMTWIPTASFRNVHMAQEESARDVGASPF 180 LYVSIAVLFYK+GLMNTLLGVVLIH+INVLM+MTWIPTA+FRNVH AQE+SARDVGA PF Sbjct: 121 LYVSIAVLFYKLGLMNTLLGVVLIHMINVLMFMTWIPTAAFRNVHQAQEDSARDVGAGPF 180 Query: 181 RVFRSITLPLAMPGIIVASIFTFLSSLDEAQGTYLVGVPNFRTMPVVMYGIITDYPAYAG 240 RVF ITLP+A+PGIIVASIFTFL+SLDEAQGT+LVG+PN++TMP+VMY II+DYPA+AG Sbjct: 181 RVFLKITLPMALPGIIVASIFTFLNSLDEAQGTFLVGIPNYKTMPIVMYSIISDYPAFAG 240 Query: 241 AVFSXXXXXXXXXXXXXXQKFVSADVLSSGFQMK 274 AVFS ++FVSADV+SSGF +K Sbjct: 241 AVFSIILTAPTIILLLAAKRFVSADVMSSGFTLK 274 >B0RI21.1 B0RI21_CLAMS Putative inner membrane transport protein Length = 271 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 109/261 (41%), Positives = 156/261 (59%) Query: 14 IEFLLLAAFVIFFMGPLLNLAILAFTGNWSYPDPLPREWSLKWWSFVLSRDGIAESIGLS 73 I+ L A +F +GPLL LA+ AF +W YP +P +L WW V +A ++ S Sbjct: 11 IQAALFAVVAVFILGPLLWLAVHAFATSWDYPSLVPAGLTLDWWRVVFEDAELAAAVRNS 70 Query: 74 FGIAAIVTAVSILLCVPAAYAFARIXXXXXXXXXXXXXXTHAFPKMGLYVSIAVLFYKIG 133 A I VS L+C+PAAYAF+R T+AFPKMGL+VS+A LFY + Sbjct: 71 LYFAPITVLVSALVCLPAAYAFSRFQFPGRRILLVGLFATNAFPKMGLFVSMASLFYGLH 130 Query: 134 LMNTLLGVVLIHIINVLMYMTWIPTASFRNVHMAQEESARDVGASPFRVFRSITLPLAMP 193 LMNT+ G+V++ +I +++MTWIP A+F V + EE+ARD GA R F +TLPLA+P Sbjct: 131 LMNTITGIVIVQLIGTVVFMTWIPAAAFSAVPRSLEEAARDAGAGRVRTFLHVTLPLALP 190 Query: 194 GIIVASIFTFLSSLDEAQGTYLVGVPNFRTMPVVMYGIITDYPAYAGAVFSXXXXXXXXX 253 GI+VA + +FL++ DEAQGTYLVG P + TMP MY ++ ++P AVF+ Sbjct: 191 GILVAVLMSFLAAFDEAQGTYLVGAPVYMTMPTEMYSLVLNHPKQVAAVFAILLSVPSVA 250 Query: 254 XXXXXQKFVSADVLSSGFQMK 274 ++ + L+ GFQ++ Sbjct: 251 LLLLARRHIMGGRLAEGFQIR 271 >A5CS86.1 A5CS86_CLAM3 Putative polyamine ABC transporter, permease component Length = 271 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 114/274 (41%), Positives = 160/274 (58%), Gaps = 3/274 (1%) Query: 1 MRWYLKAVGPKKIIEFLLLAAFVIFFMGPLLNLAILAFTGNWSYPDPLPREWSLKWWSFV 60 MR L A G I+ L A +F +GPLL LA AF +W YP +P +L WW V Sbjct: 1 MRALLSARG---WIQAALFAVVAVFILGPLLWLAAHAFATSWDYPSLVPAGLTLDWWRVV 57 Query: 61 LSRDGIAESIGLSFGIAAIVTAVSILLCVPAAYAFARIXXXXXXXXXXXXXXTHAFPKMG 120 +A ++ S A I VS L+C+PAAYAF+R T+AFPKMG Sbjct: 58 FEDAELAAAVRNSLYFAPITVLVSALVCLPAAYAFSRFQFPGRRILLVGLFATNAFPKMG 117 Query: 121 LYVSIAVLFYKIGLMNTLLGVVLIHIINVLMYMTWIPTASFRNVHMAQEESARDVGASPF 180 L+VS+A LFY + LMNT+ G+V++ +I +++MTWIP A+F V + EE+ARD GA Sbjct: 118 LFVSMASLFYGLHLMNTVTGIVIVQLIGTVVFMTWIPAAAFSAVPRSLEEAARDAGAGRV 177 Query: 181 RVFRSITLPLAMPGIIVASIFTFLSSLDEAQGTYLVGVPNFRTMPVVMYGIITDYPAYAG 240 R F +TLPLA+PGI+VA + +FL++ DEAQGTYLVG P + TMP MY ++ ++P Sbjct: 178 RTFLHVTLPLALPGILVAVLMSFLAAFDEAQGTYLVGAPVYMTMPTEMYSLVLNHPKQVA 237 Query: 241 AVFSXXXXXXXXXXXXXXQKFVSADVLSSGFQMK 274 AVF+ ++ + L+ GFQ++ Sbjct: 238 AVFAILLSVPSVALLLLARRHIMGGRLAEGFQIR 271 >B9K1F8.1 B9K1F8_AGRVS ABC transporter membrane spanning protein (Sugar) Length = 269 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/249 (40%), Positives = 140/249 (56%), Gaps = 1/249 (0%) Query: 24 IFFMGPLLNLAILAFTGNWSYPDPLPREWSLKWWSFVLSRDGIAESIGLSFGIAAIVTAV 83 +F PLL + AFT W YP +P+++ L++W L R + E++ LS + A VT + Sbjct: 19 LFIALPLLVVGTWAFTEVWRYPSVIPQQFGLRFWFLTLGRADVWEALFLSLRLTATVTLL 78 Query: 84 SILLCVPAAYAFARIXXXXXXXXXXXXXXTHAFPKMGLYVSIAVLFYKIGLMNTLLGVVL 143 S ++C+PAAYAFAR+ +HAFPK GL V+IA +F K+ L++T GV L Sbjct: 79 SAVICLPAAYAFARMKFPGRNLLFLSFLASHAFPKFGLLVAIAAIFLKLHLISTFWGVAL 138 Query: 144 IHIINVLMYMTWIPTASFRNVHMAQEESARDVGASPFRVFRSITLPLAMPGIIVASIFTF 203 I ++ LM M WIP A+F+NV EE+ARD GA P RVF SITLP A P I A + TF Sbjct: 139 IQLVGTLMLMIWIPVAAFQNVDRRMEEAARDAGARPLRVFWSITLPQAAPTIFAALLLTF 198 Query: 204 LSSLDEAQGTYLVGVPNFRTMPVVMYGIITDYPAYA-GAVFSXXXXXXXXXXXXXXQKFV 262 +S+ E +G +L+G P RTMPV+M I + GAV S ++ + Sbjct: 199 VSTFYETEGAWLIGAPQVRTMPVLMVSFINNQMVVQYGAVLSVMLWVPSFLALIFARRAI 258 Query: 263 SADVLSSGF 271 + GF Sbjct: 259 GTGAFAKGF 267 >Q1M955.1 Q1M955_RHIL3 Putative transmembrane permease component of ABC transporter Length = 275 Score = 181 bits (459), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 100/257 (38%), Positives = 146/257 (56%), Gaps = 2/257 (0%) Query: 17 LLLAAFVIFFMG-PLLNLAILAFTGNWSYPDPLPREWSLKWWSFVLSRDGIAESIGLSFG 75 +L A + F+ PL+ + AFT W YP +P+++ L++W L+R + +++ LS Sbjct: 17 MLFACLLTLFIALPLIVVGTWAFTEVWRYPSVIPQQFGLRFWGQTLARPDVWDALFLSLR 76 Query: 76 IAAIVTAVSILLCVPAAYAFARIXXXXXXXXXXXXXXTHAFPKMGLYVSIAVLFYKIGLM 135 + VT +S ++C+PAAYAFAR+ +HAFPK GL V+IA +F ++GL+ Sbjct: 77 LTTTVTILSAVICLPAAYAFARMRFPGRNILFLSFLASHAFPKFGLLVAIAGIFLQLGLI 136 Query: 136 NTLLGVVLIHIINVLMYMTWIPTASFRNVHMAQEESARDVGASPFRVFRSITLPLAMPGI 195 +T GVVLI ++ LM M WIP A+F+NV EE+ARD GA+P RVF SITLP A P I Sbjct: 137 STFWGVVLIQLVGTLMLMIWIPVAAFQNVDRRMEEAARDAGATPLRVFWSITLPQAGPTI 196 Query: 196 IVASIFTFLSSLDEAQGTYLVGVPNFRTMPVVMYGIITDYPAYA-GAVFSXXXXXXXXXX 254 A + TF+ + E +G +LVG P RTMPV+M I + GAV S Sbjct: 197 AAALLLTFVGTFYETEGAWLVGAPQVRTMPVLMISFINNQIVVQYGAVLSVMLWVPSFIA 256 Query: 255 XXXXQKFVSADVLSSGF 271 ++ + + GF Sbjct: 257 LMFARRVIGTGAFARGF 273 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.141 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,413,476,246 Number of extensions: 53046114 Number of successful extensions: 186015 Number of sequences better than 1.0e-05: 4264 Number of HSP's gapped: 185352 Number of HSP's successfully gapped: 4277 Length of query: 274 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 140 Effective length of database: 1,798,280,193 Effective search space: 251759227020 Effective search space used: 251759227020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)