BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0011.p (388 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1HMS9.1 B1HMS9_LYSSC Putative uncharacterized protein 124 1e-26 B3K601.1 B3K601_9BACI Putative uncharacterized protein 117 3e-24 C0ZI66.1 C0ZI66_BREBN Putative uncharacterized protein 109 5e-22 Q2BC58.1 Q2BC58_9BACI Putative uncharacterized protein 60 4e-07 >B1HMS9.1 B1HMS9_LYSSC Putative uncharacterized protein Length = 365 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 98/332 (29%), Positives = 163/332 (49%), Gaps = 49/332 (14%) Query: 67 VMLTAIYPPALANALKQLPWVGGIFERADDLGLQAAQSLGLISRPNSSDTHEGITLSAEE 126 +++T + P +A A+K++P + +F+ DLGL AA GL ++ N+S THEG TL+ E Sbjct: 63 IIVTGLISPTMAAAMKEVPLLSSVFKFTRDLGLHAADEKGLSTKLNTSVTHEGFTLNVTE 122 Query: 127 AVFDGNRLAFSVK---REGE--KEGLGDKLTGVTVGPDGKLFQEKGTISSAKVLIDGVPL 181 V+DG R+A ++ +EGE KE L D+++ + ++G PL Sbjct: 123 VVYDGTRVAIGIEGHHKEGENSKESLSDQMSNIEFS------------------LNGEPL 164 Query: 182 EEFAVGHWEAIPYLSWIGGKEDNTAIFELVD--SSNLGISTKPFPDQFVLTLTIGLEGID 239 P K++N+A+ E D + N GI F +F LTL+ + GI Sbjct: 165 NHTNYSGVYMQP------SKDNNSAVLEFADLENKNGGI----FQKKFNLTLSTTITGIS 214 Query: 240 EPFILQIPARRVTENIIDTPGIRVQADGWSLTLQRLEYSP----LTTRLSLTLEQDADGN 295 EPF + IP R + I P I + T++++ +P +TTR++L + + Sbjct: 215 EPFKMDIPVRDIGNYINLQPNISRKYKNNQFTIEQIILTPITTSITTRIALLDKSTSVDF 274 Query: 296 RRAFELTDFEVMDEQGQILESTHQSGILSSDRSRN---VDLLTEPFGKHPNMLTIRAYYN 352 R + EV DEQG+ L+ + +G +++ + +DL PF P +TI+ Y + Sbjct: 275 REGIRI---EVYDEQGRELKLINGNGGRETNKGNSDFIMDLRVHPFETLPKAITIKPYIH 331 Query: 353 ELKDPKKKYGLYKTDSSGNAVKHYIKGLEINV 384 L D + G Y+ D +G+ YI LEI + Sbjct: 332 -LYDFE---GSYQLDENGDPKIQYIPELEITI 359 >B3K601.1 B3K601_9BACI Putative uncharacterized protein Length = 397 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 97/346 (28%), Positives = 168/346 (48%), Gaps = 44/346 (12%) Query: 66 SVMLTAIYPPALANALKQLPWVGGIFERADDLGLQAAQSLGLISRPNSSDTHEGITLSAE 125 +V+ + P +A LKQ+P +G ++E + ++AA G++S PN S TH+G+TL Sbjct: 71 TVIGSGFVSPVMAATLKQIPVLGVLYEGTSEDAVKAAIEQGILSEPNLSLTHDGVTLKVA 130 Query: 126 EAVFDGNRLAFSVKREG-------------EKEGLGDKLTG-VTVGPDGKLFQEKGTISS 171 + ++DG RL+F ++REG + +G++ + V K QEKG I Sbjct: 131 DLLYDGTRLSFILEREGVDLPGTASPYISEDATLIGNQDSEYVKSRKVAKEDQEKGYIEM 190 Query: 172 AKVLIDGVPLEEFAVGHWEAIPYLSWIGGKEDNTAIFELVDSSNLGISTKPFPDQFVLTL 231 ++L+DG +E A+G Y ++DN I EL L PDQF LT+ Sbjct: 191 PRILVDG---QEVAMGEGTFGDY-----PQQDNAYIVELAKGLKL-------PDQFELTI 235 Query: 232 TIGLEGIDEPFILQIPARRVTENIIDTPGIRVQADG-WSLTLQRLEYSPLTTRLSL---- 286 + ++E F +IP +I+ P ++DG +S T+++L+ SP++TRL L Sbjct: 236 QANVTQVNETFEFKIPVNVANPSIVVKPDQATKSDGPFSYTVKQLDISPVSTRLVLDSKG 295 Query: 287 ----TLEQDADGNRRAFELTDFEVMDEQGQILESTHQSGILSSDRSR-NVDLLTEPFGKH 341 ++EQ D + + +E++D+QG +L S ++ ++D L P Sbjct: 296 EVPASVEQTGD---YSASMVYYELVDDQGNVLSPRKFEYFHSEPQTEYHIDQLYSPLNGT 352 Query: 342 PNMLTIRAYYNELKDPKKKYGLYKTDSSGNAVKHYIKGLEINVLVQ 387 P +TI+ + L K + + D K Y+K LE+ + V+ Sbjct: 353 PKSITIKPF--TLTVNPKDWSVIGQDQDSVGDKTYLKDLEMTIPVK 396 >C0ZI66.1 C0ZI66_BREBN Putative uncharacterized protein Length = 368 Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 104/398 (26%), Positives = 163/398 (40%), Gaps = 51/398 (12%) Query: 1 MNNENLEKQLRELRKANTQELPPLLRTRQDSIYASLATIVQDSGVXXXXXXXXXXXXXXX 60 M+ + +L+E ++ + PL+R R D+ YA+L + ++ V Sbjct: 1 MDQSKFDVELQEYKRTKDSTMSPLVRARLDATYAALPEMSRERKVQRLRKAPYVAAAAVI 60 Query: 61 XXXLLSVMLTAIYPPALANALKQLPWVGGIFERAD-DLGLQAAQSLGLISRPNSSDTHEG 119 +V + P +A ++KQ+P VG +F + DLGL+AA GL S+ N S +H Sbjct: 61 LGA--TVFTSGFISPVMAQSIKQIPLVGSLFSFIEADLGLRAAGEQGLSSKVNRSISHHD 118 Query: 120 ITLSAEEAVFDGNRLAF--SVKREGEKEG----------LGDKLTGVTVGPDGKLFQEKG 167 + L E VFDG R + +V K+G L D + VT DGK G Sbjct: 119 MKLEVTETVFDGTRAVYLLNVTAPNLKDGMFDTGAEVVKLSDAIENVTFSIDGK-----G 173 Query: 168 TISSAKVLIDGVPLEEFAVGHWEAIPYLSWIGGKEDNTAIFELVDSSNLGISTKPFPDQF 227 ++ G + G N +FE + + ST PD F Sbjct: 174 QDDPDSLVTGG---------------FFYSAGESHPNFLVFEEILKTPDHNSTGKIPDSF 218 Query: 228 VLTLTIGLEGIDEPFILQIPARRVTENIIDTPGIRVQA-DGWSLTLQRLEYSPLTTRLSL 286 + + L GID+ F L IP ++ T N I +Q+ DG S + + +P+TTRL Sbjct: 219 HAEVVVKLAGIDQAFKLDIPFQKATNNTIQLKPNAIQSNDGISFEVSEVNVTPVTTRLLY 278 Query: 287 TLEQDADGNRRAFELTDFEVMDEQGQILESTHQSGILSSDRSRNVDLLTEPFGKHPNMLT 346 +++ D + ++ F D+QG+ L S H G D + D P Sbjct: 279 SVKLDGATSDKSIRAALF---DDQGRQLTSLHGEG-ERKDNTLTFDARYASAQGQPKYFI 334 Query: 347 IRAYYNELKDPKKKYGLYKTDSSGNAVKHYIKGLEINV 384 I+ + K + TD +IKGLEI V Sbjct: 335 IKPFV-----VKDHFAETVTDD------QFIKGLEIKV 361 >Q2BC58.1 Q2BC58_9BACI Putative uncharacterized protein Length = 436 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 65/286 (22%), Positives = 111/286 (38%), Gaps = 39/286 (13%) Query: 70 TAIYPPALANALKQLPWVGGIFERADDLGLQAAQSLGLISRPNSSDTHEGITLSAEEAVF 129 +AIY PA+A ++P VG F + D GL+ A + GL S T +GITL+ E + Sbjct: 60 SAIYSPAIAKIASEIPVVGTFFSGSGDEGLEIAGAKGLTQVVGKSATDKGITLTINEVFY 119 Query: 130 DGNRLAFSVKREGEKEGLGDKLTGVTVGPDGKLFQEKGTISSAKVLIDGVPLEEFAVGHW 189 DG RLAF E L + G + + +DG Sbjct: 120 DGTRLAFGFTHE--------SLLAI------------GEMERPAIYVDG----------- 148 Query: 190 EAIPYLSWIGGKEDNTAIFELVDSSNLGISTKPFPDQFVLTLTIGLEGI-DEPFILQIPA 248 I + S G+ A ++ + N T+ P++F + + G+ + + P Sbjct: 149 NEINFSSGSSGEFVTPAKYQGILDIN---PTEELPEEFTMKFRVDAVGLMPGKWEFEFPV 205 Query: 249 RRVTENIIDTPGIRVQADGWSLTLQRLEYSPLTTRLSLTLEQDADGNR-RAFELTDFEVM 307 ++ E + P G + + ++ P T LS++L D + + + F ++ Sbjct: 206 KQSGEVTVIRPKETKNIQGMEVNVNSVKIGPAGTDLSVSLTADLEQTKLDPYTDLHFNIV 265 Query: 308 DEQGQILESTHQSG---ILSSDRSRNVDLLTEPFGKHPNMLTIRAY 350 D QG L SG + + +L P + L+I Y Sbjct: 266 DNQGLALRQMSGSGHGDTVDGKEEATLSMLYSPVKEGTKSLSIIPY 311 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,174,232,658 Number of extensions: 89308692 Number of successful extensions: 162191 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 162187 Number of HSP's successfully gapped: 5 Length of query: 388 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 250 Effective length of database: 1,760,596,133 Effective search space: 440149033250 Effective search space used: 440149033250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)