BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0008.p (299 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5WD74.1 Q5WD74_BACSK DNA-3-methyladenine glycosylase II EC=3.2.... 264 6e-69 C3BUS4.1 C3BUS4_9BACI DNA-3-methyladenine glycosylase II 262 2e-68 C3B6F9.1 C3B6F9_BACMY DNA-3-methyladenine glycosylase II 261 5e-68 C3AP01.1 C3AP01_BACMY DNA-3-methyladenine glycosylase II 261 7e-68 B1HNF2.1 B1HNF2_LYSSC DNA-3-methyladenine glycosylase EC=3.2.2.21 260 8e-68 >Q5WD74.1 Q5WD74_BACSK DNA-3-methyladenine glycosylase II EC=3.2.2.21 Length = 303 Score = 264 bits (675), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 132/284 (46%), Positives = 173/284 (60%), Gaps = 8/284 (2%) Query: 20 LEYLNRSPLECLYRTDQEGVTRYFNLDNQPLLIKLTVPPGNRMHVTLLHGDIPGPGAAEW 79 L YL R EC+Y T+ + +TR + LI+++V +M V L+ P + EW Sbjct: 24 LGYLKREKNECMYETENDHITRMIAIGEIRSLIQISVIDNKQMVVQFLNDSRP---SEEW 80 Query: 80 ----LARYIREWFDLDRDLAPFYHXXXXXXXXXXXXEQHKGLRIVGIPDLFEALCWAILG 135 + +YI EWFDL+ DL PFY E GLR+VGIPDLFEALCW +LG Sbjct: 81 QREKIVKYIHEWFDLNTDLTPFYEMAKADPLLKKTVETFYGLRVVGIPDLFEALCWGVLG 140 Query: 136 QQVNLAFAYRLKQQLTAAFGGSLEWEGDVYYTFPGPEVFADVQLEELCALQLTRSKARTV 195 QQ+NLAFAY LK+Q FG S+EW G Y+ FP E A + +L +++T K+ + Sbjct: 141 QQINLAFAYSLKKQFVEGFGDSIEWNGKKYWVFPPYERIAQLTPTDLAGIKMTVKKSEYI 200 Query: 196 LDVAALIASGGLSREALLALPSPDAAEQRLLQICGIGPWTSQYVRMRCLDDTTAFPVGDV 255 + +A L+ASG LS+E L+ + D AE+ L+QI GIGPWT+ YV MRCL AFP+ DV Sbjct: 201 IGIAKLMASGELSKEKLIKMDFKD-AEKNLIQIRGIGPWTANYVLMRCLRFPAAFPIDDV 259 Query: 256 GLQNAVKFLTGMDRKPTPAELLKLAEPWRGWEAYATFYLWRALY 299 GL N +K LTG + KPT E+ + A W WEAYATFYLWR LY Sbjct: 260 GLHNVIKLLTGSETKPTKKEIKQYAAAWTNWEAYATFYLWRTLY 303 >C3BUS4.1 C3BUS4_9BACI DNA-3-methyladenine glycosylase II Length = 367 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 128/283 (45%), Positives = 174/283 (61%), Gaps = 8/283 (2%) Query: 21 EYLNRSPLECLYRTDQEGVTRYFNLDNQPLLIKLTVPPGNRMHVTLLHGDIPGPGAAEWL 80 YL+RS EC++ + + R ++ + LI+ +V +HV L G+ P +W+ Sbjct: 89 HYLSRSKNECMFHIENNKIYRVIPIEGENPLIETSVNDEGNIHVRFLGGETP---PEKWV 145 Query: 81 ----ARYIREWFDLDRDLAPFYHXXXXXXXXXXXXEQHKGLRIVGIPDLFEALCWAILGQ 136 ARY+REWFDLD DL PFY ++ GLR +GIPDLFEALCW ILGQ Sbjct: 146 RATVARYVREWFDLDTDLTPFYDLAKDDVLLSTPINEYYGLRNMGIPDLFEALCWGILGQ 205 Query: 137 QVNLAFAYRLKQQLTAAFGGSLEWEGDVYYTFPGPEVFADVQLEELCALQLTRSKARTVL 196 Q+NL FAY LK++ +FG +EW G Y+ FP PEV A++ +++L L++T K ++ Sbjct: 206 QINLTFAYTLKRRFVESFGEHIEWNGQKYWIFPSPEVIANLTVKDLTELKMTTRKCEYLI 265 Query: 197 DVAALIASGGLSREALLALPSPDAAEQRLLQICGIGPWTSQYVRMRCLDDTTAFPVGDVG 256 VA LI G LS+E+ + D AE+ L I GIGPWT+ Y+ MRCL +AFP+ DVG Sbjct: 266 GVAKLITQGNLSKESFIKSNLKD-AEKTLTDIRGIGPWTANYILMRCLRFPSAFPIDDVG 324 Query: 257 LQNAVKFLTGMDRKPTPAELLKLAEPWRGWEAYATFYLWRALY 299 L N +K LTG D KPT E+ + A W+ WE+YATFYLWR LY Sbjct: 325 LHNVIKLLTGSDHKPTKKEIREYASAWKNWESYATFYLWRVLY 367 >C3B6F9.1 C3B6F9_BACMY DNA-3-methyladenine glycosylase II Length = 367 Score = 261 bits (668), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 128/283 (45%), Positives = 173/283 (61%), Gaps = 8/283 (2%) Query: 21 EYLNRSPLECLYRTDQEGVTRYFNLDNQPLLIKLTVPPGNRMHVTLLHGDIPGPGAAEWL 80 YL+RS EC++ + + R ++ + LI+ +V +HV L G+ P +W+ Sbjct: 89 HYLSRSKNECMFHIENNKIYRVIPIEGENPLIETSVNDEGNIHVRFLGGETP---PEKWV 145 Query: 81 ----ARYIREWFDLDRDLAPFYHXXXXXXXXXXXXEQHKGLRIVGIPDLFEALCWAILGQ 136 ARY+REWFDLD DL PFY ++ GLR +GIPDLFEALCW ILGQ Sbjct: 146 RATVARYVREWFDLDTDLNPFYDLAKDDVLLSTPINEYYGLRNMGIPDLFEALCWGILGQ 205 Query: 137 QVNLAFAYRLKQQLTAAFGGSLEWEGDVYYTFPGPEVFADVQLEELCALQLTRSKARTVL 196 Q+NL FAY LK++ +FG +EW G Y+ FP PE A++ +++L L++T K ++ Sbjct: 206 QINLTFAYTLKRRFVESFGEHIEWNGQKYWIFPSPEFIANLTVKDLTKLKMTTRKCEYLI 265 Query: 197 DVAALIASGGLSREALLALPSPDAAEQRLLQICGIGPWTSQYVRMRCLDDTTAFPVGDVG 256 VA LI G LS+E+ + D AE+ L I GIGPWT+ YV MRCL +AFP+ DVG Sbjct: 266 GVAKLITQGNLSKESFIKSDLKD-AEKTLTDIRGIGPWTANYVLMRCLKFPSAFPIDDVG 324 Query: 257 LQNAVKFLTGMDRKPTPAELLKLAEPWRGWEAYATFYLWRALY 299 L N +K LTG D KPT E+ + A W+ WE+YATFYLWR LY Sbjct: 325 LHNVIKLLTGSDHKPTKKEIREYASAWKNWESYATFYLWRVLY 367 >C3AP01.1 C3AP01_BACMY DNA-3-methyladenine glycosylase II Length = 367 Score = 261 bits (666), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 128/283 (45%), Positives = 173/283 (61%), Gaps = 8/283 (2%) Query: 21 EYLNRSPLECLYRTDQEGVTRYFNLDNQPLLIKLTVPPGNRMHVTLLHGDIPGPGAAEWL 80 YL+RS EC++ + + R ++ + LI+ +V +HV L G+ P +W+ Sbjct: 89 HYLSRSKNECMFHIENNKIYRVIPIEGENPLIETSVNDEGNIHVRFLGGETP---PEKWV 145 Query: 81 ----ARYIREWFDLDRDLAPFYHXXXXXXXXXXXXEQHKGLRIVGIPDLFEALCWAILGQ 136 ARY+REWFDLD DL PFY ++ GLR +GIPDLFEALCW ILGQ Sbjct: 146 RATVARYVREWFDLDTDLNPFYDLAKDDVLLSTPINEYYGLRNMGIPDLFEALCWGILGQ 205 Query: 137 QVNLAFAYRLKQQLTAAFGGSLEWEGDVYYTFPGPEVFADVQLEELCALQLTRSKARTVL 196 Q+NL FAY LK++ +FG +EW G Y+ FP PE A++ +++L L++T K ++ Sbjct: 206 QINLTFAYTLKRRFVESFGEHIEWNGQKYWIFPSPEFIANLTVKDLTKLKMTTRKCEYLI 265 Query: 197 DVAALIASGGLSREALLALPSPDAAEQRLLQICGIGPWTSQYVRMRCLDDTTAFPVGDVG 256 VA LI G LS+E+ + D AE+ L I GIGPWT+ YV MRCL +AFP+ DVG Sbjct: 266 GVAKLITQGNLSKESFIKSDLKD-AEKTLTDIRGIGPWTANYVLMRCLRFPSAFPIDDVG 324 Query: 257 LQNAVKFLTGMDRKPTPAELLKLAEPWRGWEAYATFYLWRALY 299 L N +K LTG D KPT E+ + A W+ WE+YATFYLWR LY Sbjct: 325 LHNVIKLLTGSDHKPTKKEIREYASAWKNWESYATFYLWRVLY 367 >B1HNF2.1 B1HNF2_LYSSC DNA-3-methyladenine glycosylase EC=3.2.2.21 Length = 312 Score = 260 bits (665), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 126/281 (44%), Positives = 173/281 (61%), Gaps = 2/281 (0%) Query: 20 LEYLNRSPLECLYRTDQEGVTRYFNLDNQPLLIKLTVPPGNRMHVTLLHGDIPGPG-AAE 78 L YL R EC+Y + + +T+ + L+++ V +M V L+ P E Sbjct: 33 LGYLTREKNECMYEIENDSITKVIAIGEIRSLVQVNVMKNKQMIVQFLNESRPIESWQRE 92 Query: 79 WLARYIREWFDLDRDLAPFYHXXXXXXXXXXXXEQHKGLRIVGIPDLFEALCWAILGQQV 138 + +YI EWFDL DL PFY E GLR++GIPDLFEALCW +LGQQ+ Sbjct: 93 QVVKYIHEWFDLHNDLTPFYEMAKADPLLKIPAESFYGLRVIGIPDLFEALCWGVLGQQI 152 Query: 139 NLAFAYRLKQQLTAAFGGSLEWEGDVYYTFPGPEVFADVQLEELCALQLTRSKARTVLDV 198 NLAFAY LK+Q FG +EW G ++ FP E A + +L +++T K+ ++ + Sbjct: 153 NLAFAYTLKRQFVEKFGDFIEWNGKQFWVFPSYERIAQLTPSDLADIKMTVRKSEYIIGI 212 Query: 199 AALIASGGLSREALLALPSPDAAEQRLLQICGIGPWTSQYVRMRCLDDTTAFPVGDVGLQ 258 A L+ASG LSRE L+ + D AE+ L++I GIGPWT+ YV MRCL TAFP+ DVGL Sbjct: 213 AKLMASGELSREKLMKMNFKD-AEKSLIKIRGIGPWTANYVLMRCLRFRTAFPIDDVGLI 271 Query: 259 NAVKFLTGMDRKPTPAELLKLAEPWRGWEAYATFYLWRALY 299 N++K L M++KPT E+L+L+ PW+ WE+YATFYLWR LY Sbjct: 272 NSIKILLNMNQKPTKDEILELSIPWKNWESYATFYLWRVLY 312 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.141 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,745,909,439 Number of extensions: 69341935 Number of successful extensions: 129236 Number of sequences better than 1.0e-05: 907 Number of HSP's gapped: 128196 Number of HSP's successfully gapped: 907 Length of query: 299 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 164 Effective length of database: 1,788,859,178 Effective search space: 293372905192 Effective search space used: 293372905192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)