BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0006.p (191 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3EP51.1 C3EP51_BACTK Methylphosphotriester-DNA alkyltransferase 156 1e-36 Q65GV8.1 Q65GV8_BACLD Methylphosphotriester-DNA alkyltransferase... 155 1e-36 A3I8T2.1 A3I8T2_9BACI Methylphosphotriester-DNA alkyltransferase 155 2e-36 B9IV38.1 B9IV38_BACCQ Transcriptional regulator, AraC family 154 5e-36 C2ZSV8.1 C2ZSV8_BACCE Methylphosphotriester-DNA alkyltransferase 153 6e-36 >C3EP51.1 C3EP51_BACTK Methylphosphotriester-DNA alkyltransferase Length = 198 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 69/180 (38%), Positives = 104/180 (57%), Gaps = 2/180 (1%) Query: 4 ALFEQIYESVVRREPTYDGVYYTAVLTTHIVCRPSCRARTPKAGNVVFYESLEQAVAAGF 63 L + +++++ + +YD ++ AV +T I CRPSC++R P NV + EQA++ F Sbjct: 7 TLTNEYWQAIIHNDSSYDSKFFYAVKSTGIFCRPSCKSRIPNRNNVRIFHHAEQALSENF 66 Query: 64 RPCKRCRPEEGGVLRPDAVLAAEADRLMEAQFGQKVTLEMLAGWLRVSPFHLQRTYKRVT 123 RPCKRC+P G+ P+ + +E + + +TL+MLAG SPFHLQRT+KR+ Sbjct: 67 RPCKRCKP--NGITLPNEEWVEQIKDYIEKHYDKSLTLDMLAGMCHGSPFHLQRTFKRII 124 Query: 124 GRSPAGRLDQLRIEKACALLADTELAVAEVGQAVSFRGPSHFTAWFTRKTGLPPTEYRAQ 183 G +P + Q RI KA L T ++ E+ AV P +F F +KTG PTEYR + Sbjct: 125 GLTPIEYIQQFRILKATKYLLHTNQSIKEISTAVGIENPEYFATLFKKKTGFTPTEYRKK 184 >Q65GV8.1 Q65GV8_BACLD Methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family) Length = 186 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 108/177 (61%), Gaps = 2/177 (1%) Query: 5 LFEQIYESVVRREPTYDGVYYTAVLTTHIVCRPSCRARTPKAGNVVFYESLEQAVAAGFR 64 L +++ ++ + YDGV+Y AV TT I CRPSC++R P+ NV + + + A++ G+R Sbjct: 7 LTPEMWRAITENDSAYDGVFYYAVKTTGIFCRPSCKSRVPQIDNVQIFFNAKDALSEGYR 66 Query: 65 PCKRCRPEEGGVLRPDAVLAAEADRLMEAQFGQKVTLEMLAGWLRVSPFHLQRTYKRVTG 124 PCKRC P G L PD LA ++E + ++L+ LA +SPFHLQRT+KR+ G Sbjct: 67 PCKRCNP--AGALLPDEELAQRVVEIIEESYRDPLSLQALADRCHISPFHLQRTFKRIKG 124 Query: 125 RSPAGRLDQLRIEKACALLADTELAVAEVGQAVSFRGPSHFTAWFTRKTGLPPTEYR 181 SPA + Q RIEKA LLA +E ++AE+ V +F + F +KTG PT YR Sbjct: 125 VSPAEYILQKRIEKAVDLLAHSERSIAEIASMVGIANAEYFASLFKKKTGQSPTSYR 181 >A3I8T2.1 A3I8T2_9BACI Methylphosphotriester-DNA alkyltransferase Length = 185 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/184 (41%), Positives = 113/184 (61%), Gaps = 5/184 (2%) Query: 1 MDQAL---FEQIYESVVRREPTYDGVYYTAVLTTHIVCRPSCRARTPKAGNVVFYESLEQ 57 MD A+ FE+ +E ++ + TYDG++YTAV TT I CRPSC++R PK NV FYES+++ Sbjct: 1 MDNAIHLSFEEKWEKIIACDQTYDGLFYTAVKTTKIYCRPSCKSRKPKKMNVDFYESIQE 60 Query: 58 AVAAGFRPCKRCRPEEGGVLRPDAVLAAEADRLMEAQFGQKVTLEMLAGWLRVSPFHLQR 117 AG+R CKRC+PE P L + + + + QKVTL+ +A + +SPFHL+R Sbjct: 61 VETAGYRACKRCQPEIE--CSPHTQLIQQVTAFIISAYKQKVTLQDMAEHVGISPFHLER 118 Query: 118 TYKRVTGRSPAGRLDQLRIEKACALLADTELAVAEVGQAVSFRGPSHFTAWFTRKTGLPP 177 +K+VT +P L+++RI+KA LL T+ E+ F+ PS+F F R P Sbjct: 119 LFKQVTAETPRAYLEKIRIDKAAHLLKHTDYTNLEICYEAGFQSPSNFYKVFRRLKNCSP 178 Query: 178 TEYR 181 T+YR Sbjct: 179 TQYR 182 >B9IV38.1 B9IV38_BACCQ Transcriptional regulator, AraC family Length = 198 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 73/190 (38%), Positives = 108/190 (56%), Gaps = 4/190 (2%) Query: 4 ALFEQIYESVVRREPTYDGVYYTAVLTTHIVCRPSCRARTPKAGNVVFYESLEQAVAAGF 63 L + +++++ +P+YD ++ AV +T I CRPSC++R P NV + EQA+ F Sbjct: 7 TLTNEHWQAIIHNDPSYDSKFFYAVKSTGIFCRPSCKSRIPNKNNVRIFHHAEQALNENF 66 Query: 64 RPCKRCRPEEGGVLRPDAVLAAEADRLMEAQFGQKVTLEMLAGWLRVSPFHLQRTYKRVT 123 RPCKRC+P G+ P+ + +E F + +TL++LA SPFHLQRT+K++T Sbjct: 67 RPCKRCKP--NGLTLPNEEWVEQIKEYIEKHFDELLTLDILAEMCHGSPFHLQRTFKKMT 124 Query: 124 GRSPAGRLDQLRIEKACALLADTELAVAEVGQAVSFRGPSHFTAWFTRKTGLPPTEYRA- 182 G SP + Q RI KA L T + E+ AV P +F F +KTG PTEYR Sbjct: 125 GISPIEYIQQFRIVKAAEHLLHTNQPIKEISTAVGIENPEYFATLFKKKTGFTPTEYRKK 184 Query: 183 -QFKGGIHHE 191 + K G ++E Sbjct: 185 NEMKEGYNNE 194 >C2ZSV8.1 C2ZSV8_BACCE Methylphosphotriester-DNA alkyltransferase Length = 201 Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 73/189 (38%), Positives = 111/189 (58%), Gaps = 4/189 (2%) Query: 5 LFEQIYESVVRREPTYDGVYYTAVLTTHIVCRPSCRARTPKAGNVVFYESLEQAVAAGFR 64 L ++ +++++ + +YD ++ AV +T I CRPSC++R P NV + EQA+ A FR Sbjct: 11 LTDEYWQAIIHNDSSYDDKFFYAVKSTRIFCRPSCKSRIPNQNNVRIFLHAEQALQANFR 70 Query: 65 PCKRCRPEEGGVLRPDAVLAAEADRLMEAQFGQKVTLEMLAGWLRVSPFHLQRTYKRVTG 124 PCKRC+P G+ P+ + +E F + +TL++LA SPFHLQRT+KR+TG Sbjct: 71 PCKRCKP--NGITLPNEEWVEQIKEYIEKHFDEVLTLDILAEMCHGSPFHLQRTFKRITG 128 Query: 125 RSPAGRLDQLRIEKACALLADTELAVAEVGQAVSFRGPSHFTAWFTRKTGLPPTEYRAQ- 183 SP + Q RI KA L+ T+ +V E+ AV +F + +KTG PTEYR + Sbjct: 129 ISPIEYIQQFRIVKATEYLSHTKRSVKEISTAVGIENQEYFATLYKKKTGFTPTEYRKKN 188 Query: 184 -FKGGIHHE 191 K G ++E Sbjct: 189 VMKEGDNNE 197 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.136 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,121,201,620 Number of extensions: 40913488 Number of successful extensions: 98419 Number of sequences better than 1.0e-05: 1946 Number of HSP's gapped: 98636 Number of HSP's successfully gapped: 1946 Length of query: 191 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 63 Effective length of database: 1,854,806,283 Effective search space: 116852795829 Effective search space used: 116852795829 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 127 (53.5 bits)