BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0005.p (342 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4LDM1.1 C4LDM1_TOLAT 2-keto-3-deoxygluconate transporter 364 5e-99 A7MPJ3.1 A7MPJ3_ENTS8 Putative uncharacterized protein 363 9e-99 C2BBW0.1 C2BBW0_9ENTR Putative uncharacterized protein 362 4e-98 B6F6U7.1 B6F6U7_9ENTR Putative uncharacterized protein 361 5e-98 C1MFN9.1 C1MFN9_9ENTR 2-keto-3-deoxygluconate permease 359 2e-97 >C4LDM1.1 C4LDM1_TOLAT 2-keto-3-deoxygluconate transporter Length = 335 Score = 364 bits (935), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 183/313 (58%), Positives = 219/313 (69%) Query: 9 MKIKQTLDKIPGGMMLVPLFLGAIIHTAFPNAGDYFGGFTKGLMTGTVPILAVWFFCMGA 68 MKIK T+D+IPGG+MLVPL LGAI+HTA P +YFG FTKG++TGT+PIL+VWFFC+GA Sbjct: 1 MKIKATIDRIPGGLMLVPLLLGAILHTAAPGTAEYFGSFTKGIITGTLPILSVWFFCIGA 60 Query: 69 AIDVRATGTVIRKSGTLVLTKXXXXXXXXXXXXQFLPEGGVQSGFFAGLSVLAIISAMDM 128 +ID+RATGTV+RKSGTLVLTK Q LPE G++ G AGLS LA++SAMDM Sbjct: 61 SIDLRATGTVLRKSGTLVLTKIAVAWVVALIAAQLLPEYGIEVGMLAGLSTLALVSAMDM 120 Query: 129 TNGGLYASIMQQYGTKEESGAFVLMSLESGPLVTMLILGSTGAAVFEPHLFVGAVLPFLI 188 TNGGLYAS+M QYG+KEESGAFVLMS+ESGPL+TM+ILGS G A F+PH FVGAVLPFLI Sbjct: 121 TNGGLYASLMNQYGSKEESGAFVLMSVESGPLMTMVILGSAGLASFQPHHFVGAVLPFLI 180 Query: 189 GFLLGNLDHDLRAYFGKATQTLIPFFGFALGSSIDLGVIADXXXXXXXXXXXXXXXXXXP 248 GF LGNLDHDLR +F +ATQTLIPFFGFALG++I+LGVI D P Sbjct: 181 GFALGNLDHDLREFFSRATQTLIPFFGFALGNTINLGVILDTGLLGIAMGLLVIVVTGIP 240 Query: 249 LILADKFIGKXXXXXXXXXXXXXXXXXXXPMLVANMKPEFLPXXXXXXXXXXXXXIVTSI 308 LI+AD+ IG P+++A M P F IVTSI Sbjct: 241 LIIADRLIGGGNGTAGLAASSTAGAAVANPVIIAQMNPAFAKIAPAATALVATCVIVTSI 300 Query: 309 LVPVVTAYYSDYM 321 LVP++TA Y+ M Sbjct: 301 LVPILTAMYAKRM 313 >A7MPJ3.1 A7MPJ3_ENTS8 Putative uncharacterized protein Length = 334 Score = 363 bits (933), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 183/313 (58%), Positives = 224/313 (71%) Query: 9 MKIKQTLDKIPGGMMLVPLFLGAIIHTAFPNAGDYFGGFTKGLMTGTVPILAVWFFCMGA 68 MKIK T+++IPGGMML+PL LGAI++T P G+YFG FTKG+++GTVP+LAVWFFC+GA Sbjct: 2 MKIKATMERIPGGMMLIPLLLGAILNTLAPETGNYFGSFTKGMISGTVPVLAVWFFCIGA 61 Query: 69 AIDVRATGTVIRKSGTLVLTKXXXXXXXXXXXXQFLPEGGVQSGFFAGLSVLAIISAMDM 128 +ID+RATGTV+RKSGTLVLTK F+P+ G+Q+GFFAGLSVLAI+SAMDM Sbjct: 62 SIDLRATGTVLRKSGTLVLTKIAVAWLVAMIAASFIPDTGIQTGFFAGLSVLAIVSAMDM 121 Query: 129 TNGGLYASIMQQYGTKEESGAFVLMSLESGPLVTMLILGSTGAAVFEPHLFVGAVLPFLI 188 TNGGLYAS+M QYGTKEESGAFVLMSLESGPL+TM+ILGS G A FEPH F+GAVLPFLI Sbjct: 122 TNGGLYASLMNQYGTKEESGAFVLMSLESGPLMTMVILGSAGLASFEPHHFIGAVLPFLI 181 Query: 189 GFLLGNLDHDLRAYFGKATQTLIPFFGFALGSSIDLGVIADXXXXXXXXXXXXXXXXXXP 248 GF LGNLDHDLRA+F KAT LIPFFGFALG++I+L VI + P Sbjct: 182 GFALGNLDHDLRAFFSKATPVLIPFFGFALGNTINLRVILETGLLGIVLGVAVIIITGIP 241 Query: 249 LILADKFIGKXXXXXXXXXXXXXXXXXXXPMLVANMKPEFLPXXXXXXXXXXXXXIVTSI 308 LI+ADKF+G P+++A + P F P IVT+I Sbjct: 242 LIMADKFLGGGNGTAGVAASSAAGAAVANPVIIAQINPAFEPVAAQATALVAASVIVTAI 301 Query: 309 LVPVVTAYYSDYM 321 LVP++TA Y+ ++ Sbjct: 302 LVPIITALYARHV 314 >C2BBW0.1 C2BBW0_9ENTR Putative uncharacterized protein Length = 336 Score = 362 bits (928), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 184/315 (58%), Positives = 222/315 (70%) Query: 5 MINHMKIKQTLDKIPGGMMLVPLFLGAIIHTAFPNAGDYFGGFTKGLMTGTVPILAVWFF 64 M MKIK T+++IPGGMML+PL LGA+++T P+ G YFG FTKG+++GTVPILAVWFF Sbjct: 1 MRTFMKIKATIERIPGGMMLIPLLLGAVLNTLAPDTGAYFGSFTKGMISGTVPILAVWFF 60 Query: 65 CMGAAIDVRATGTVIRKSGTLVLTKXXXXXXXXXXXXQFLPEGGVQSGFFAGLSVLAIIS 124 C+GA+ID+RATGTV+RKSGTLV+TK F+P+ G+Q+GFFAGLSVLAI+S Sbjct: 61 CIGASIDLRATGTVLRKSGTLVITKIAVAWVVAMIAASFIPDTGIQTGFFAGLSVLAIVS 120 Query: 125 AMDMTNGGLYASIMQQYGTKEESGAFVLMSLESGPLVTMLILGSTGAAVFEPHLFVGAVL 184 AMDMTNGGLYAS+M QYGTKEESGAFVLMSLESGPL+TM+ILGS G A FEPH FVGAVL Sbjct: 121 AMDMTNGGLYASLMNQYGTKEESGAFVLMSLESGPLMTMVILGSAGLASFEPHHFVGAVL 180 Query: 185 PFLIGFLLGNLDHDLRAYFGKATQTLIPFFGFALGSSIDLGVIADXXXXXXXXXXXXXXX 244 PFLIGF LGNLDHDLRA+F KAT LIPFFGFALG++I+L VI D Sbjct: 181 PFLIGFALGNLDHDLRAFFSKATPVLIPFFGFALGNTINLSVIVDTGLLGIVLGVAVIVI 240 Query: 245 XXXPLILADKFIGKXXXXXXXXXXXXXXXXXXXPMLVANMKPEFLPXXXXXXXXXXXXXI 304 PLI+AD+ IG P+++A + P F P I Sbjct: 241 TGIPLIIADRVIGGGNGTAGVAASSAAGAAVANPVIIAQINPAFEPVAASATALVAASVI 300 Query: 305 VTSILVPVVTAYYSD 319 VT+ILVP++TA Y+ Sbjct: 301 VTAILVPIITALYAK 315 >B6F6U7.1 B6F6U7_9ENTR Putative uncharacterized protein Length = 330 Score = 361 bits (927), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 187/311 (60%), Positives = 221/311 (71%) Query: 9 MKIKQTLDKIPGGMMLVPLFLGAIIHTAFPNAGDYFGGFTKGLMTGTVPILAVWFFCMGA 68 MKIK T+++IPGGMMLVPL LGAI++T P+ G YFGGFTKG++TGTVPILAVWFFC+GA Sbjct: 1 MKIKATIERIPGGMMLVPLVLGAILNTLAPDTGAYFGGFTKGMITGTVPILAVWFFCIGA 60 Query: 69 AIDVRATGTVIRKSGTLVLTKXXXXXXXXXXXXQFLPEGGVQSGFFAGLSVLAIISAMDM 128 +I++RATGTV+RKSGTLVLTK F+PE G+Q+GFFAGLSVLAI+SAMDM Sbjct: 61 SINLRATGTVLRKSGTLVLTKIAVAWVVAMVCALFIPENGIQTGFFAGLSVLAIVSAMDM 120 Query: 129 TNGGLYASIMQQYGTKEESGAFVLMSLESGPLVTMLILGSTGAAVFEPHLFVGAVLPFLI 188 TNGGLYAS+M QYGTKEESGAFVLMSLESGPL+TMLILGS G A FEPH FVGA+LPFLI Sbjct: 121 TNGGLYASLMNQYGTKEESGAFVLMSLESGPLMTMLILGSAGLASFEPHHFVGAILPFLI 180 Query: 189 GFLLGNLDHDLRAYFGKATQTLIPFFGFALGSSIDLGVIADXXXXXXXXXXXXXXXXXXP 248 GF LGNLDHDLR +F KAT LIPFFGFALG++I+L VI D P Sbjct: 181 GFALGNLDHDLRDFFSKATPVLIPFFGFALGNTINLNVILDTGLLGIVLGVAVIVITGIP 240 Query: 249 LILADKFIGKXXXXXXXXXXXXXXXXXXXPMLVANMKPEFLPXXXXXXXXXXXXXIVTSI 308 LI+AD+ IG P+++A + P F P IVT+I Sbjct: 241 LIIADRVIGGGNGTAGVAASSAAGAAVANPVIIAQINPAFEPVAASATALVAASVIVTAI 300 Query: 309 LVPVVTAYYSD 319 LVP++TA Y+ Sbjct: 301 LVPIITALYAK 311 >C1MFN9.1 C1MFN9_9ENTR 2-keto-3-deoxygluconate permease Length = 332 Score = 359 bits (922), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 181/311 (58%), Positives = 221/311 (71%) Query: 9 MKIKQTLDKIPGGMMLVPLFLGAIIHTAFPNAGDYFGGFTKGLMTGTVPILAVWFFCMGA 68 MKIK T+++IPGGMML+PL LGA+++T P+ G YFG FTKG+++GTVPILAVWFFC+GA Sbjct: 1 MKIKATIERIPGGMMLIPLLLGAVLNTLAPDTGAYFGSFTKGMISGTVPILAVWFFCIGA 60 Query: 69 AIDVRATGTVIRKSGTLVLTKXXXXXXXXXXXXQFLPEGGVQSGFFAGLSVLAIISAMDM 128 +ID+RATGTV+RKSGTLV+TK F+P+ G+Q+GFFAGLSVLAI+SAMDM Sbjct: 61 SIDLRATGTVLRKSGTLVITKIAVAWVVAMIAASFIPDTGIQTGFFAGLSVLAIVSAMDM 120 Query: 129 TNGGLYASIMQQYGTKEESGAFVLMSLESGPLVTMLILGSTGAAVFEPHLFVGAVLPFLI 188 TNGGLYAS+M QYGTKEESGAFVLMSLESGPL+TM+ILGS G A FEPH F+GAVLPFLI Sbjct: 121 TNGGLYASLMNQYGTKEESGAFVLMSLESGPLMTMVILGSAGLASFEPHHFIGAVLPFLI 180 Query: 189 GFLLGNLDHDLRAYFGKATQTLIPFFGFALGSSIDLGVIADXXXXXXXXXXXXXXXXXXP 248 GF LGNLDHDLR++F KAT LIPFFGFALG++I+L VI D P Sbjct: 181 GFTLGNLDHDLRSFFSKATPVLIPFFGFALGNTINLSVIVDTGLLGILLGVAVIVITGIP 240 Query: 249 LILADKFIGKXXXXXXXXXXXXXXXXXXXPMLVANMKPEFLPXXXXXXXXXXXXXIVTSI 308 LI+AD+ IG P+++A + P F P IVT+I Sbjct: 241 LIIADRVIGGGNGTAGVAASSAAGAAVANPVIIAQINPAFEPVAASATALVAASVIVTAI 300 Query: 309 LVPVVTAYYSD 319 LVP++TA Y+ Sbjct: 301 LVPIITALYAK 311 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.143 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,576,552,162 Number of extensions: 58949567 Number of successful extensions: 141014 Number of sequences better than 1.0e-05: 218 Number of HSP's gapped: 140646 Number of HSP's successfully gapped: 219 Length of query: 342 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 206 Effective length of database: 1,779,438,163 Effective search space: 366564261578 Effective search space used: 366564261578 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)