BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0002.p (392 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K401.1 B3K401_9BACI Zinc finger SWIM domain protein 198 7e-49 B1DET0.1 B1DET0_9BACL Zinc finger SWIM domain protein 137 2e-30 C2VE14.1 C2VE14_BACCE SWIM zinc finger containing protein 64 4e-08 C2TZU8.1 C2TZU8_BACCE SWIM zinc finger containing protein 64 4e-08 C2QVK3.1 C2QVK3_BACCE SWIM zinc finger containing protein 63 4e-08 >B3K401.1 B3K401_9BACI Zinc finger SWIM domain protein Length = 549 Score = 198 bits (504), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 189/355 (53%), Gaps = 15/355 (4%) Query: 1 MQPKTMINDAEWDKLISDVAYYFDDLTLKRGFQYYKQNRVR-SFRMISSRRVMAVVEGRE 59 M P ++D +W LI A YF DLT+KRGFQYYKQ RV S + +S + A V+G E Sbjct: 2 MNPNLTLDDLQWQTLIRQTAGYFSDLTIKRGFQYYKQGRVHASEKADASGVIEASVDGTE 61 Query: 60 DYAVSMELDSLTDSHCDCPVQGPCKHMAAVLMSVAESQERSVNMLANAKAVIDRKKXXXX 119 Y + ++L SL+DS C CPV G CKHM AVL+ A+ Q RS++ L NA + Sbjct: 62 TYRIRLQLHSLSDSECSCPVNGGCKHMVAVLLDYAQLQGRSIHALVNAHSTTYAATSSYD 121 Query: 120 XXXXXXXXXXXR----REQAKKLAGLIPGATVAEWRDYMALLTAPLAQTVRNPQYAERAL 175 R + + A +P ++ W + + TA L +N YA+ AL Sbjct: 122 RSEPGLSQGHERPPAGVSKWRVKADHLPELPISAWHELFEVCTASLGANTQNSFYAKNAL 181 Query: 176 SAIAQAKADLPPAAELLFQLNAHLFILESLITPGGLHNAGALSSPGYALGYYTAIAVSEL 235 +++ K LPP + L++L+AHLFILE L+ A A ++ G +GY+T +A + Sbjct: 182 ASLHHIKPPLPPDMDPLYELHAHLFILEKLVK----QPASAWNASGSYIGYHTQVAADHI 237 Query: 236 QEAIIRLMKRSLPLASEPEAW-PRLKDTLAYVQLEMLTESRDRLREQPYFSFCYDQLWQR 294 I R++ L + EA+ RL +T+++V+ ML+E R+R +++ Y QLW Sbjct: 238 LARIERILHEGLVDSEHEEAFGQRLTETISFVRRSMLSEPRNR----KFYAQVYMQLWMH 293 Query: 295 WIAPNA-SDPALYLEELEXXXXXXXXXXXXVNRSALLLAESRMYFYLSDDKAAWE 348 WI P A + L EELE ++R++ +A+S M FYL +D+++W+ Sbjct: 294 WIHPLAKKNDGLIKEELEQLQAAESELGSSLSRASWYMAQSFMSFYLGEDESSWD 348 >B1DET0.1 B1DET0_9BACL Zinc finger SWIM domain protein Length = 571 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 115/376 (30%), Positives = 166/376 (44%), Gaps = 38/376 (10%) Query: 1 MQPKTMINDAEWDKLISDVAYYFDDLTLKRGFQYYKQNRVRSFRMISSR-RVMAVVEGRE 59 M M+ D W +L+ VA FD+LT+ RGFQYYKQ RV + V A V+ Sbjct: 1 MDMDYMLEDGAWRRLLEGVAARFDELTIIRGFQYYKQGRVEELELRDDGVHVDARVKDNR 60 Query: 60 DYAVSMELDSLTDSHCDCPVQGPCKHMAAVLMSVAESQERSVNMLANAKAVIDRKKXXXX 119 Y V+++LD L S C C C HMAA LM AE R + LANA++ + Sbjct: 61 MYDVAVDLDDLDASECACSANRACTHMAATLMRYAELCGRPIQALANARSALKSASASGK 120 Query: 120 XXXXXXXXXXXRREQAKKLA-----------GLIPGAT----------------VAEWRD 152 R A+ + G+ P A VA+W + Sbjct: 121 PDGGRGGARHGERAAAEAPSRAGNGGDGVDRGVAPEAPRLIRPTLTEAELTELPVAKWHE 180 Query: 153 YMALLTAPLAQTVRNPQYAERALSAIAQAKADLPPAAELLFQLNAHLFILESLITPGGLH 212 P+ Q +R Q A L+ + + LP A E LF LNA LF+LE ++ P Sbjct: 181 RFQERWGPVHQHIRTAQEAGELLADLQAMRPMLPWALEQLFTLNALLFLLEQMVKPSQAD 240 Query: 213 NAGALSSPGYALGYYTAIAVSELQEAIIRLMKRSLPLASEPEA-WPRLKDTLAYVQLEML 271 A G +GY+T +A+ L L++ L LA++ A W RL +T +++ ML Sbjct: 241 GRQA----GLFMGYHTKLALEGLLGQAQNLLEDKLALANDNSAYWDRLMETADFLRERML 296 Query: 272 TESRDRLREQPYFSFCYDQLWQRWIAP-NASDPALYLEELEXXXXXXXXXXXXVNRSALL 330 TE + F+ Y +WQRW++P +A ALY EEL ++R + Sbjct: 297 TEDKT----LACFAALYAWMWQRWLSPGSAGSAALYEEELRQLQASEAELGSSISRLSWT 352 Query: 331 LAESRMYFYLSDDKAA 346 LA+ + YL+ D A Sbjct: 353 LAQCLLLIYLARDAEA 368 >C2VE14.1 C2VE14_BACCE SWIM zinc finger containing protein Length = 129 Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 2/88 (2%) Query: 15 LISDVAYYFDDLTLKRGFQYYKQNRVRSFRMISSRRVMAVVEGRE-DYAVSMELDSLTDS 73 L+ D+ + + +G++YY+ V I ++V+A V G +Y V ++L+ T+S Sbjct: 5 LLKDITKWIPKYIIDKGYEYYEDGHVEDVE-IQDKKVIAFVTGNAGNYEVIIDLEDFTES 63 Query: 74 HCDCPVQGPCKHMAAVLMSVAESQERSV 101 C+CP + CKHMAAV+ + + ER+V Sbjct: 64 SCECPYENLCKHMAAVVYDIQGAGERTV 91 >C2TZU8.1 C2TZU8_BACCE SWIM zinc finger containing protein Length = 129 Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 2/88 (2%) Query: 15 LISDVAYYFDDLTLKRGFQYYKQNRVRSFRMISSRRVMAVVEGRE-DYAVSMELDSLTDS 73 L+ D+ + + +G++YY+ V I ++V+A V G +Y V ++L+ T+S Sbjct: 5 LLKDITKWIPKYIIDKGYEYYEDGHVEDVE-IQDKKVIAFVTGNAGNYEVIIDLEDFTES 63 Query: 74 HCDCPVQGPCKHMAAVLMSVAESQERSV 101 C+CP + CKHMAAV+ + + ER+V Sbjct: 64 SCECPYENLCKHMAAVVYDIQGAGERTV 91 >C2QVK3.1 C2QVK3_BACCE SWIM zinc finger containing protein Length = 145 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Query: 15 LISDVAYYFDDLTLKRGFQYYKQNRVRSFRMISSRRVMAVVEGRE-DYAVSMELDSLTDS 73 L+ D+ + + +G++YY++ V I +++ A V G DY V ++L+ T+S Sbjct: 21 LLHDITKWIPKYIMDKGYEYYEEGHVEDVE-IQDKKIFAFVTGNAGDYEVIIDLEDFTES 79 Query: 74 HCDCPVQGPCKHMAAVLMSVAESQERSV 101 C+CP + CKHMAAV+ + + E +V Sbjct: 80 SCECPYENLCKHMAAVVYEIQSAGESTV 107 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.132 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,051,493,409 Number of extensions: 70368822 Number of successful extensions: 160584 Number of sequences better than 1.0e-05: 68 Number of HSP's gapped: 160638 Number of HSP's successfully gapped: 69 Length of query: 392 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 254 Effective length of database: 1,760,596,133 Effective search space: 447191417782 Effective search space used: 447191417782 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)