BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0001.p (141 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DET0.1 B1DET0_9BACL Zinc finger SWIM domain protein 159 1e-37 B3K401.1 B3K401_9BACI Zinc finger SWIM domain protein 154 2e-36 B7JGG9.1 B7JGG9_BACC0 Putative uncharacterized protein 83 7e-15 C3GRM8.1 C3GRM8_BACTU Zinc finger SWIM domain protein 83 7e-15 C2W1Q6.1 C2W1Q6_BACCE Zinc finger SWIM domain protein 83 9e-15 >B1DET0.1 B1DET0_9BACL Zinc finger SWIM domain protein Length = 571 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/140 (55%), Positives = 93/140 (66%) Query: 1 VVRRLPEAEPRMWSTLSAMLPLSGGIYEDKLLDHGKWRDWMDYQLSSGKVPSDFRVSDLQ 60 +V +LPEAEP MW TL MLP S IYED L HG+W W+D Q+ G+ P FRV+ L+ Sbjct: 431 IVTQLPEAEPAMWRTLQEMLPFSRTIYEDALAAHGRWDRWIDLQMCMGQDPLSFRVTMLK 490 Query: 61 PVEKHAPELLLPFYHQAAERFVLEKNRHSYXXXXXXXXXXXXXXXXXXREERWGEFLDAF 120 PVEK APELLLPFYHQA ER+VL+KNR Y R ERW +F+ AF Sbjct: 491 PVEKEAPELLLPFYHQAVERYVLQKNRDGYKAAAKLLKRLAKLYVRLKRSERWEQFIAAF 550 Query: 121 TTRHSRLRALQEELRKGKLI 140 +R+SRLRALQEELRKG L+ Sbjct: 551 ASRNSRLRALQEELRKGGLL 570 >B3K401.1 B3K401_9BACI Zinc finger SWIM domain protein Length = 549 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 72/140 (51%), Positives = 96/140 (68%) Query: 1 VVRRLPEAEPRMWSTLSAMLPLSGGIYEDKLLDHGKWRDWMDYQLSSGKVPSDFRVSDLQ 60 V+ LP RMWS+L+ MLP S IY++ L+ HG+WR+W+DYQLS+G+ P + RVS+L Sbjct: 409 VIEHLPGETERMWSSLADMLPYSKDIYQNALITHGRWREWIDYQLSTGREPLELRVSELA 468 Query: 61 PVEKHAPELLLPFYHQAAERFVLEKNRHSYXXXXXXXXXXXXXXXXXXREERWGEFLDAF 120 P+EK+APELLLPFYHQA ER++L KNR Y ++ERW F+ + Sbjct: 469 PIEKNAPELLLPFYHQAVERYILHKNRAGYKAAVKLLKRLAKLYKKLKQQERWDLFIISL 528 Query: 121 TTRHSRLRALQEELRKGKLI 140 + R+SRLRA QEELR+GKLI Sbjct: 529 SVRNSRLRAFQEELRRGKLI 548 >B7JGG9.1 B7JGG9_BACC0 Putative uncharacterized protein Length = 539 Score = 83.2 bits (204), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 64/132 (48%) Query: 9 EPRMWSTLSAMLPLSGGIYEDKLLDHGKWRDWMDYQLSSGKVPSDFRVSDLQPVEKHAPE 68 +P + L +LP S YE +L ++R W + QL G + L+ +EK APE Sbjct: 403 QPGLEMILQELLPYSFANYEQYVLAKKQYRTWTELQLLHGFEAIELLKEPLKDIEKEAPE 462 Query: 69 LLLPFYHQAAERFVLEKNRHSYXXXXXXXXXXXXXXXXXXREERWGEFLDAFTTRHSRLR 128 LP YH AA + E+NR +Y R + W F+ HSRLR Sbjct: 463 AALPLYHLAATEAIEERNRKAYRRAVRYLKKLRTLYKRLKRTDEWDAFIIHIANLHSRLR 522 Query: 129 ALQEELRKGKLI 140 ALQEELRKGKLI Sbjct: 523 ALQEELRKGKLI 534 >C3GRM8.1 C3GRM8_BACTU Zinc finger SWIM domain protein Length = 539 Score = 83.2 bits (204), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 64/132 (48%) Query: 9 EPRMWSTLSAMLPLSGGIYEDKLLDHGKWRDWMDYQLSSGKVPSDFRVSDLQPVEKHAPE 68 +P + L +LP S YE +L ++R W + QL G + L+ +EK APE Sbjct: 403 QPGLEMILQELLPYSFANYEQYVLAKKQYRTWTELQLLHGFEAIELLKEPLKDIEKEAPE 462 Query: 69 LLLPFYHQAAERFVLEKNRHSYXXXXXXXXXXXXXXXXXXREERWGEFLDAFTTRHSRLR 128 LP YH AA + E+NR +Y R + W F+ HSRLR Sbjct: 463 AALPLYHLAATEAIEERNRKAYRRAVRYLKKLRTLYKRLKRTDEWDAFIIHIANLHSRLR 522 Query: 129 ALQEELRKGKLI 140 ALQEELRKGKLI Sbjct: 523 ALQEELRKGKLI 534 >C2W1Q6.1 C2W1Q6_BACCE Zinc finger SWIM domain protein Length = 539 Score = 82.8 bits (203), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 61/125 (48%) Query: 16 LSAMLPLSGGIYEDKLLDHGKWRDWMDYQLSSGKVPSDFRVSDLQPVEKHAPELLLPFYH 75 L +LP S YE +L ++R W + QL G + L+ +EK APE LP YH Sbjct: 410 LQELLPYSFANYEQYVLAKKQYRTWTELQLLHGFEAIELLKEPLKDIEKEAPEAALPLYH 469 Query: 76 QAAERFVLEKNRHSYXXXXXXXXXXXXXXXXXXREERWGEFLDAFTTRHSRLRALQEELR 135 AA + E+NR SY R + W F+ HSRLRALQEELR Sbjct: 470 LAATEAIEERNRKSYRRAVRYLKKLRTLYKRLKRTDEWDAFIIHIANLHSRLRALQEELR 529 Query: 136 KGKLI 140 KGKLI Sbjct: 530 KGKLI 534 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 791,265,586 Number of extensions: 26894446 Number of successful extensions: 51227 Number of sequences better than 1.0e-05: 97 Number of HSP's gapped: 51133 Number of HSP's successfully gapped: 97 Length of query: 141 Length of database: 3,060,696,203 Length adjustment: 104 Effective length of query: 37 Effective length of database: 2,080,910,643 Effective search space: 76993693791 Effective search space used: 76993693791 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)