BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0563.0007.p
         (90 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0Z5J1.1 C0Z5J1_BREBN Putative ferrous iron transport protein A       108   1e-22
Q63FT2.1 Q63FT2_BACCZ Ferrous iron transport protein A                 97   5e-19
Q4MKZ7.1 Q4MKZ7_BACCE Ferrous iron transport protein B                 97   5e-19
B9J507.1 B9J507_BACCQ Ferrous iron transport protein A                 97   5e-19
Q73DD0.1 Q73DD0_BACC1 Ferrous iron transport protein A, putative       97   5e-19

>C0Z5J1.1 C0Z5J1_BREBN Putative ferrous iron transport protein A
          Length = 84

 Score =  108 bits (271), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 66/83 (79%)

Query: 7  MAGAVIPLSEAVNGSKLVISGIEVQGVLRRRLLDLGFVVGNAVEVLRRSPLGDPTAFRVS 66
          M    IPLS+A+ GS + +  I+VQG+LRRRLLDLGFV GN VEV+++SPLGDPTAFRV+
Sbjct: 1  MPSISIPLSDALIGSHICLDRIDVQGILRRRLLDLGFVPGNIVEVMQKSPLGDPTAFRVN 60

Query: 67 NTTIALRREESELIYGTLIGGGD 89
          NT IALR+EES LI+G  +G  +
Sbjct: 61 NTIIALRKEESSLIFGEYVGSDE 83


>Q63FT2.1 Q63FT2_BACCZ Ferrous iron transport protein A
          Length = 85

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 63/81 (77%)

Query: 6  VMAGAVIPLSEAVNGSKLVISGIEVQGVLRRRLLDLGFVVGNAVEVLRRSPLGDPTAFRV 65
          +++  + PLSE   G  + I  I+++G ++RRLLDLGF+ G  ++VL+RSPLGDP A++V
Sbjct: 1  MVSANIKPLSEFKTGEFVQIEKIQLEGTMKRRLLDLGFIPGATIKVLQRSPLGDPVAYQV 60

Query: 66 SNTTIALRREESELIYGTLIG 86
          SNTTIALR+EES LI+G LIG
Sbjct: 61 SNTTIALRKEESSLIFGVLIG 81


>Q4MKZ7.1 Q4MKZ7_BACCE Ferrous iron transport protein B
          Length = 85

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 63/81 (77%)

Query: 6  VMAGAVIPLSEAVNGSKLVISGIEVQGVLRRRLLDLGFVVGNAVEVLRRSPLGDPTAFRV 65
          +++  + PLSE   G  + I  I+++G ++RRLLDLGF+ G  ++VL+RSPLGDP A++V
Sbjct: 1  MVSANIKPLSEFKTGEFVQIEKIQLEGTMKRRLLDLGFIPGATIKVLQRSPLGDPVAYQV 60

Query: 66 SNTTIALRREESELIYGTLIG 86
          SNTTIALR+EES LI+G LIG
Sbjct: 61 SNTTIALRKEESSLIFGVLIG 81


>B9J507.1 B9J507_BACCQ Ferrous iron transport protein A
          Length = 95

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 59/74 (79%)

Query: 13 PLSEAVNGSKLVISGIEVQGVLRRRLLDLGFVVGNAVEVLRRSPLGDPTAFRVSNTTIAL 72
          PLSE   G  + I  I+++G ++RRLLDLGF+ G  ++VL+RSPLGDP A++VSNTTIAL
Sbjct: 18 PLSEFKTGEFVQIEKIQLEGTMKRRLLDLGFIPGATIKVLQRSPLGDPVAYQVSNTTIAL 77

Query: 73 RREESELIYGTLIG 86
          R+EES LI+G LIG
Sbjct: 78 RKEESSLIFGVLIG 91


>Q73DD0.1 Q73DD0_BACC1 Ferrous iron transport protein A, putative
          Length = 85

 Score = 96.7 bits (239), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 63/81 (77%)

Query: 6  VMAGAVIPLSEAVNGSKLVISGIEVQGVLRRRLLDLGFVVGNAVEVLRRSPLGDPTAFRV 65
          +++  + PLSE   G  + I  I+++G ++RRLLDLGF+ G  ++VL+RSPLGDP A++V
Sbjct: 1  MVSANIKPLSEFKTGEFVQIEKIQLEGTMKRRLLDLGFIPGATIKVLQRSPLGDPVAYQV 60

Query: 66 SNTTIALRREESELIYGTLIG 86
          SNTTIALR+EES LI+G LIG
Sbjct: 61 SNTTIALRKEESSLIFGILIG 81


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.140    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 498,976,836
Number of extensions: 16606961
Number of successful extensions: 47588
Number of sequences better than 1.0e-05: 166
Number of HSP's gapped: 47612
Number of HSP's successfully gapped: 166
Length of query: 90
Length of database: 3,060,696,203
Length adjustment: 60
Effective length of query: 30
Effective length of database: 2,495,435,303
Effective search space: 74863059090
Effective search space used: 74863059090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)