BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0563.0006.p (243 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z5J2.1 C0Z5J2_BREBN Putative truncated ferrous iron transport ... 320 1e-85 C5D2R1.1 C5D2R1_9BACI Small GTP-binding protein 288 2e-76 Q4MKZ8.1 Q4MKZ8_BACCE Ferrous iron transport protein B 282 1e-74 C3BXW0.1 C3BXW0_BACTU Ferrous iron transport protein B 282 1e-74 C3EX67.1 C3EX67_BACTU Ferrous iron transport protein B 281 3e-74 >C0Z5J2.1 C0Z5J2_BREBN Putative truncated ferrous iron transport protein B Length = 243 Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 152/243 (62%), Positives = 185/243 (76%) Query: 1 MSQFTVAFAGNPNTGKSTLFNLLTGLRQHTGNWAGKTVITAEGEFTHNNHKYRAVDLPGT 60 MS +T+A AGNPNTGKSTLFN LTGLRQHTGNWAGKTV+ AEGEF+ + +R +DLPGT Sbjct: 1 MSSYTIALAGNPNTGKSTLFNTLTGLRQHTGNWAGKTVVMAEGEFSRGDTTFRIIDLPGT 60 Query: 61 YSLYSNSADEEAARDYIIFEEPDVTLVVLDATSLERNLNLALQVLEITGRAVICINLIDE 120 YSLYSNSADEE ARDYIIFE+PDVT+VVLDATSLERNLNLALQVLE+T R V+C+NLIDE Sbjct: 61 YSLYSNSADEEVARDYIIFEQPDVTIVVLDATSLERNLNLALQVLEMTPRVVVCVNLIDE 120 Query: 121 ARRLGIDINLKAISKRLGVPVAAISARGKIGIEALLDQIERVATGAFTAQPLRINYSDEI 180 A++LGI I+L+ IS+RLGVP AISAR IGIE LLDQ+E+VA G P++I YSD+I Sbjct: 121 AKKLGIRIDLEKISQRLGVPCIAISARNHIGIENLLDQVEKVANGTTVPTPVQITYSDQI 180 Query: 181 EQGIAELIPMVEQTVGSRYPARWIAXXXXXXXXXXXXXXKAHMGRQNIPGTKEVIAHGVT 240 E +A+L ++E+T+GSR+P RWIA + M + +E + HG T Sbjct: 181 ESKLAQLELLIEKTLGSRFPTRWIALRLLDGDESLLNTLRERMQKPAESFGEERLTHGQT 240 Query: 241 ACH 243 CH Sbjct: 241 VCH 243 >C5D2R1.1 C5D2R1_9BACI Small GTP-binding protein Length = 244 Score = 288 bits (738), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 137/242 (56%), Positives = 177/242 (73%), Gaps = 7/242 (2%) Query: 2 SQFTVAFAGNPNTGKSTLFNLLTGLRQHTGNWAGKTVITAEGEFTHNNHKYRAVDLPGTY 61 +++T+A AGNPNTGKSTLFN+LTGLRQHTGNW GKTV+ AEG FT+NN++Y+ +DLPGTY Sbjct: 4 NEYTIALAGNPNTGKSTLFNVLTGLRQHTGNWPGKTVVHAEGFFTYNNNRYKMIDLPGTY 63 Query: 62 SLYSNSADEEAARDYIIFEEPDVTLVVLDATSLERNLNLALQVLEITGRAVICINLIDEA 121 SLYSNSADEE ARD+IIFE+PDVT+VVLDAT+LERNLNLALQVLE+T ++C+NL+DEA Sbjct: 64 SLYSNSADEEVARDFIIFEKPDVTIVVLDATALERNLNLALQVLEMTSSVIVCVNLMDEA 123 Query: 122 RRLGIDINLKAISKRLGVPVAAISARGKIGIEALLDQIERVATGAFTAQPLRINYSDEIE 181 ++ GI I+ + ++ LGVPV ISAR K GI+ LL I+ + G P+ + YS EIE Sbjct: 124 KKKGIRIDTEKLAATLGVPVVPISARNKEGIDTLLKTIDSMVRGKIKTNPIAVRYSPEIE 183 Query: 182 QGIAELIPMVEQTVGSRYPARWIAXXXXXXXXXXXXXXKAHMGRQNIPGTKEVIAHGVTA 241 Q I +LIP V++ +G YPARW+A + +Q +P KEV + A Sbjct: 184 QCIEKLIPRVKEVIGDAYPARWVALRLLDGDMSLLHA----LQQQPLPSVKEV---SIYA 236 Query: 242 CH 243 CH Sbjct: 237 CH 238 >Q4MKZ8.1 Q4MKZ8_BACCE Ferrous iron transport protein B Length = 240 Score = 282 bits (722), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 137/240 (57%), Positives = 172/240 (71%), Gaps = 3/240 (1%) Query: 1 MSQFTVAFAGNPNTGKSTLFNLLTGLRQHTGNWAGKTVITAEGEFTHNNHKYRAVDLPGT 60 MS+ +A AGNPNTGKSTLFN LTGL+QHTGNW GKTV+ AEGE+ HN KY +DLPGT Sbjct: 1 MSKHRIALAGNPNTGKSTLFNTLTGLKQHTGNWTGKTVLKAEGEYEHNGSKYTLIDLPGT 60 Query: 61 YSLYSNSADEEAARDYIIFEEPDVTLVVLDATSLERNLNLALQVLEITGRAVICINLIDE 120 YSLYSNSADEE ARDYIIFE+P+VT+VV+DAT++ERNLNLALQV+E+T VICINLIDE Sbjct: 61 YSLYSNSADEEVARDYIIFEKPEVTVVVIDATAMERNLNLALQVMEMTSNVVICINLIDE 120 Query: 121 ARRLGIDINLKAISKRLGVPVAAISARGKIGIEALLDQIERVATGAFTAQPLRINYSDEI 180 A + GI I+ K ++K LGVPV ISAR ++GI LL+ I +VA P++I+YS++I Sbjct: 121 AEKKGIVIDEKKLAKSLGVPVVKISARNRVGIGHLLNVIAKVANKKLIPTPIKISYSEKI 180 Query: 181 EQGIAELIPMVEQTVGSRYPARWIAXXXXXXXXXXXXXXKAHMGRQNIPGTKEVIAHGVT 240 E I EL P + + G YPARWIA + H N P +EV+ +G++ Sbjct: 181 ENMIQELEPQIYKVFGDTYPARWIALRILDGDKNFLTTLQKH---HNEPLVREVVMNGIS 237 >C3BXW0.1 C3BXW0_BACTU Ferrous iron transport protein B Length = 240 Score = 282 bits (722), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 137/240 (57%), Positives = 172/240 (71%), Gaps = 3/240 (1%) Query: 1 MSQFTVAFAGNPNTGKSTLFNLLTGLRQHTGNWAGKTVITAEGEFTHNNHKYRAVDLPGT 60 MS+ +A AGNPNTGKSTLFN LTGL+QHTGNW GKTV+ AEGE+ HN KY +DLPGT Sbjct: 1 MSKHRIALAGNPNTGKSTLFNTLTGLKQHTGNWTGKTVLKAEGEYEHNGSKYTLIDLPGT 60 Query: 61 YSLYSNSADEEAARDYIIFEEPDVTLVVLDATSLERNLNLALQVLEITGRAVICINLIDE 120 YSLYSNSADEE ARDYIIFE+P+VT+VV+DAT++ERNLNLALQV+E+T VICINLIDE Sbjct: 61 YSLYSNSADEEVARDYIIFEKPEVTVVVIDATAMERNLNLALQVMEMTSNVVICINLIDE 120 Query: 121 ARRLGIDINLKAISKRLGVPVAAISARGKIGIEALLDQIERVATGAFTAQPLRINYSDEI 180 A + GI I+ K ++K LGVPV ISAR ++GI LL+ I +VA P++I+YS++I Sbjct: 121 AEKKGIVIDEKKLAKSLGVPVVKISARNRVGIGHLLNVIAKVANKKLIPTPIKISYSEKI 180 Query: 181 EQGIAELIPMVEQTVGSRYPARWIAXXXXXXXXXXXXXXKAHMGRQNIPGTKEVIAHGVT 240 E I EL P + + G YPARWIA + H N P +EV+ +G++ Sbjct: 181 ENMIQELEPQIYKVFGDTYPARWIALRILDGDKNFLTTLQKH---HNEPLVREVVMNGIS 237 >C3EX67.1 C3EX67_BACTU Ferrous iron transport protein B Length = 240 Score = 281 bits (720), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 136/240 (56%), Positives = 172/240 (71%), Gaps = 3/240 (1%) Query: 1 MSQFTVAFAGNPNTGKSTLFNLLTGLRQHTGNWAGKTVITAEGEFTHNNHKYRAVDLPGT 60 MS+ +A AGNPNTGKSTLFN LTGL+QHTGNW GKTV+ AEGE+ HN +KY +DLPGT Sbjct: 1 MSKHRIALAGNPNTGKSTLFNTLTGLKQHTGNWTGKTVLKAEGEYEHNGNKYTLIDLPGT 60 Query: 61 YSLYSNSADEEAARDYIIFEEPDVTLVVLDATSLERNLNLALQVLEITGRAVICINLIDE 120 YSLYSNSADEE ARDYIIFE+P+VT+VV+DAT++ERNLNLALQV+E+T VICINLIDE Sbjct: 61 YSLYSNSADEEVARDYIIFEKPEVTVVVIDATAMERNLNLALQVMEMTNNVVICINLIDE 120 Query: 121 ARRLGIDINLKAISKRLGVPVAAISARGKIGIEALLDQIERVATGAFTAQPLRINYSDEI 180 A + GI I+ K ++K LGVPV ISAR ++GI LL+ I +VA P+++ YS++I Sbjct: 121 AEKKGIVIDEKKLAKSLGVPVVKISARNRVGIGHLLNVIAKVANKKLIPTPIKVTYSEKI 180 Query: 181 EQGIAELIPMVEQTVGSRYPARWIAXXXXXXXXXXXXXXKAHMGRQNIPGTKEVIAHGVT 240 E I EL P + + G YPARWIA + H N P +EV+ +G++ Sbjct: 181 ENMIRELEPQIYKVFGDTYPARWIALRILDEDKNFLTALQKH---HNEPLVREVVINGIS 237 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,304,758,050 Number of extensions: 49076308 Number of successful extensions: 200229 Number of sequences better than 1.0e-05: 1278 Number of HSP's gapped: 199686 Number of HSP's successfully gapped: 1279 Length of query: 243 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 111 Effective length of database: 1,817,122,223 Effective search space: 201700566753 Effective search space used: 201700566753 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)