BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0563.0005.p (457 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z5J3.1 C0Z5J3_BREBN Putative truncated ferrous iron transport ... 696 0.0 C5D2R2.1 C5D2R2_9BACI Ferrous iron transport B domain protein 620 e-175 B3KA24.1 B3KA24_9BACI Ferrous iron transport B domain protein 599 e-169 A9VEZ3.1 A9VEZ3_BACWK Ferrous iron transport B domain protein 579 e-163 A7GLE0.1 A7GLE0_BACCN Ferrous iron transport B domain protein 577 e-162 >C0Z5J3.1 C0Z5J3_BREBN Putative truncated ferrous iron transport protein B Length = 468 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/457 (74%), Positives = 379/457 (82%), Gaps = 1/457 (0%) Query: 1 MDSLLSAAKKLADKGAIRDEIVSGIYGVSAGICREAVTYKDQKKLASTYKLDSIVTSKIW 60 +D+LLS A+ IRD IVS IY S IC+EAVTY++++KL+ YKLD IVTSKIW Sbjct: 13 LDALLSVARASVAGSEIRDTIVSDIYRTSRSICKEAVTYENKEKLSRVYKLDKIVTSKIW 72 Query: 61 GFPIMLAGLGLVFWITIAGANYPSGWLASFFGWIEGYLTAGFEAVNAPAWLHGVLVLGLY 120 G+PIMLA LG VFWITIAGAN PSG LA FG +EGYLTAGF+A +AP WLHG+LVLG + Sbjct: 73 GYPIMLAILGAVFWITIAGANVPSGMLADMFGVVEGYLTAGFQAAHAPEWLHGILVLGFF 132 Query: 121 RGTSWVISVMLPPMMIFFPVFALLENFGYLPRVAFNMDRLFKKSGGHGKQALTMSMGFGC 180 RGTSWV+SVMLPPM IFFPVFALLENFGYLPRVAFNMDRLFK +GGHGKQALTMSMGFGC Sbjct: 133 RGTSWVVSVMLPPMAIFFPVFALLENFGYLPRVAFNMDRLFKNAGGHGKQALTMSMGFGC 192 Query: 181 NAAAILSTRIIESPRERMLAILTNNFVPCNGRWPTLILLSSLFMVGGAAAGALRTLSTAX 240 NAAAILSTRIIESPRERMLAILTNNFVPCNGRWPTLILLSSLFM A +G ++L+TA Sbjct: 193 NAAAILSTRIIESPRERMLAILTNNFVPCNGRWPTLILLSSLFMATSATSG-WQSLTTAL 251 Query: 241 XXXXXXXXXXXXXXXXSWVMSKTALRGVPTHYTLELPPYRRPQIWKTILITSKEKSLNVL 300 SW +SKTALRGVPTHYTLELPPYRRPQIWKTILI+SK+KS +VL Sbjct: 252 IVMGMVIFGIAITLMVSWTLSKTALRGVPTHYTLELPPYRRPQIWKTILISSKDKSWSVL 311 Query: 301 TRAIVVAAPAGILTWILGNVMVGGDSVLNHMAAFFDPFANLLGLDGFIIMAFILGLPANE 360 RA++VAAPAGI+TW+LGN+ VGGDS+L HMAAFFDPFA L+GLDG+I+MAFILGLPANE Sbjct: 312 KRAVIVAAPAGIITWVLGNIYVGGDSILAHMAAFFDPFAQLIGLDGYILMAFILGLPANE 371 Query: 361 IVLPILLMGYMSSGAMVDIDGLGGIKDIFLNHGWTWLTALNMMLFSLLHYPCGTTLINIY 420 IVLPILLMGYMSSGAMVD++GL IKD+FL HGWTWLTALNMMLFSLLHYPCGTTL NIY Sbjct: 372 IVLPILLMGYMSSGAMVDVEGLDNIKDVFLQHGWTWLTALNMMLFSLLHYPCGTTLFNIY 431 Query: 421 KETRSMKWAVLSAVIPLGXXXXXXXXXXXXXRLLGWV 457 KET+S+KW VLSA+IPL R LGWV Sbjct: 432 KETKSVKWTVLSALIPLAIAVGVTFLTAQVARALGWV 468 >C5D2R2.1 C5D2R2_9BACI Ferrous iron transport B domain protein Length = 464 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 298/435 (68%), Positives = 353/435 (81%), Gaps = 2/435 (0%) Query: 2 DSLLSAAKKLADKGAIRDEIVSGIYGVSAGICREAVTYKDQKKLASTYKLDSIVTSKIWG 61 + L++ A+ LA R++IVS I+ S IC E VTY +Q K T KLD I TSK+WG Sbjct: 11 EELMNEARALAPADT-REQIVSAIFRTSQAICNETVTYTNQAKQYETEKLDRIFTSKLWG 69 Query: 62 FPIMLAGLGLVFWITIAGANYPSGWLASFFGWIEGYLTAGFEAVNAPAWLHGVLVLGLYR 121 FPIMLA L +V +ITIAGAN PS LASFFGW+EGYLT F+A++AP WLHG+LVLGLYR Sbjct: 70 FPIMLAMLAVVIYITIAGANIPSDMLASFFGWLEGYLTLFFQALHAPDWLHGLLVLGLYR 129 Query: 122 GTSWVISVMLPPMMIFFPVFALLENFGYLPRVAFNMDRLFKKSGGHGKQALTMSMGFGCN 181 GT+WV+SVMLPPM IFFP+FALLEN+GYLPRVAFNMDRLFKK+G HGKQ+LTM+MGFGCN Sbjct: 130 GTAWVVSVMLPPMAIFFPIFALLENYGYLPRVAFNMDRLFKKAGAHGKQSLTMAMGFGCN 189 Query: 182 AAAILSTRIIESPRERMLAILTNNFVPCNGRWPTLILLSSLFMVGGAAAGALRTLSTAXX 241 AAAI+STRIIESPRERMLAILTNNFVPCNGRWPTLILLSSLFM G G +TL TA Sbjct: 190 AAAIMSTRIIESPRERMLAILTNNFVPCNGRWPTLILLSSLFMAAG-YTGGWKTLVTASV 248 Query: 242 XXXXXXXXXXXXXXXSWVMSKTALRGVPTHYTLELPPYRRPQIWKTILITSKEKSLNVLT 301 SWV+SKTALRG+PTHYTLELPPYRRP+IW TI+ + +KS+ VL Sbjct: 249 VVAMVLFGIVVTLTVSWVLSKTALRGIPTHYTLELPPYRRPKIWDTIVRATLDKSIYVLK 308 Query: 302 RAIVVAAPAGILTWILGNVMVGGDSVLNHMAAFFDPFANLLGLDGFIIMAFILGLPANEI 361 RAIVVAAPAG+LTWILGN+ +G +VL ++A + DPFA LGLDG+I+MAFILGLPANEI Sbjct: 309 RAIVVAAPAGVLTWILGNIHIGDTTVLAYIADWLDPFARALGLDGYILMAFILGLPANEI 368 Query: 362 VLPILLMGYMSSGAMVDIDGLGGIKDIFLNHGWTWLTALNMMLFSLLHYPCGTTLINIYK 421 VLPILLMGY+S+G++ ++DGL +K IF++HGWTWLTALNMMLFSLLHYPCGTTL+NIYK Sbjct: 369 VLPILLMGYLSTGSLTEVDGLHSLKQIFVDHGWTWLTALNMMLFSLLHYPCGTTLVNIYK 428 Query: 422 ETRSMKWAVLSAVIP 436 ET+S KW ++ +P Sbjct: 429 ETKSKKWTFVAFALP 443 >B3KA24.1 B3KA24_9BACI Ferrous iron transport B domain protein Length = 461 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 287/453 (63%), Positives = 353/453 (77%), Gaps = 1/453 (0%) Query: 5 LSAAKKLADKGAIRDEIVSGIYGVSAGICREAVTYKDQKKLASTYKLDSIVTSKIWGFPI 64 L+AA +R++IV ++ S +C +AVT +++ L + +LD I TSK+WGFPI Sbjct: 10 LTAAIPSDQVEDVREDIVGELFKKSRELCSDAVTVTNRELLYRSERLDRIFTSKLWGFPI 69 Query: 65 MLAGLGLVFWITIAGANYPSGWLASFFGWIEGYLTAGFEAVNAPAWLHGVLVLGLYRGTS 124 MLA LG++F++TIAGAN PS LASFFGW+EGYLT F+A++AP WLHGVL+LGL+RGT+ Sbjct: 70 MLAMLGVIFYLTIAGANVPSSMLASFFGWVEGYLTMAFQAIHAPDWLHGVLILGLFRGTA 129 Query: 125 WVISVMLPPMMIFFPVFALLENFGYLPRVAFNMDRLFKKSGGHGKQALTMSMGFGCNAAA 184 WV+SVMLPPM IFFP FALLEN+GYLPRVAFN+DRLFKK+G HGKQ+LTM+MGFGCNAAA Sbjct: 130 WVVSVMLPPMAIFFPAFALLENYGYLPRVAFNLDRLFKKTGAHGKQSLTMAMGFGCNAAA 189 Query: 185 ILSTRIIESPRERMLAILTNNFVPCNGRWPTLILLSSLFMVGGAAAGALRTLSTAXXXXX 244 I+STRIIESPRERMLAILTNNFVPCNGRWPTLILL+SLFM G + GA +TL TA Sbjct: 190 IMSTRIIESPRERMLAILTNNFVPCNGRWPTLILLASLFMAAGFSGGA-QTLVTASVVMG 248 Query: 245 XXXXXXXXXXXXSWVMSKTALRGVPTHYTLELPPYRRPQIWKTILITSKEKSLNVLTRAI 304 SW +SKTAL+GVP+HYTLELPPYR+P+I TIL ++ +K++ VL RAI Sbjct: 249 MVLIGVVVTLTVSWGLSKTALKGVPSHYTLELPPYRKPKILNTILRSTLDKTIYVLRRAI 308 Query: 305 VVAAPAGILTWILGNVMVGGDSVLNHMAAFFDPFANLLGLDGFIIMAFILGLPANEIVLP 364 +VAAPAG+LTWIL N+ VG S+L H +F DPFA LGLDGFI+MAFI+GLPANEIVLP Sbjct: 309 IVAAPAGVLTWILANIYVGDSSILIHFVSFLDPFARALGLDGFILMAFIIGLPANEIVLP 368 Query: 365 ILLMGYMSSGAMVDIDGLGGIKDIFLNHGWTWLTALNMMLFSLLHYPCGTTLINIYKETR 424 ILLMGY+++G++ +++ + +K IFL+ GWTWLTALNMMLFSLLHYPCGTTL+NI+KET+ Sbjct: 369 ILLMGYLATGSLTEVEDMFALKQIFLDQGWTWLTALNMMLFSLLHYPCGTTLVNIWKETK 428 Query: 425 SMKWAVLSAVIPLGXXXXXXXXXXXXXRLLGWV 457 S KW LS IP R LGWV Sbjct: 429 SAKWTFLSFAIPTAIAIGVTFLVAQAARALGWV 461 >A9VEZ3.1 A9VEZ3_BACWK Ferrous iron transport B domain protein Length = 466 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 285/436 (65%), Positives = 344/436 (78%), Gaps = 2/436 (0%) Query: 1 MDSLLSAAKKLADKGAIRDEIVSGIYGVSAGICREAVTYKDQKKLASTYKLDSIVTSKIW 60 +D ++ A+ L+ K IRD+IV IY SA IC+EAV Y + KL + KLD I TS IW Sbjct: 12 LDYIVQHAQTLS-KEDIRDDIVGDIYRTSASICKEAVQYTNTDKLYRSEKLDKIFTSPIW 70 Query: 61 GFPIMLAGLGLVFWITIAGANYPSGWLASFFGWIEGYLTAGFEAVNAPAWLHGVLVLGLY 120 GFPIML L ++F++TIAGAN PS +A FFGW+EGYLT+ F+A++AP WLHG+L+LGL+ Sbjct: 71 GFPIMLGILSIIFYLTIAGANVPSDMIAKFFGWVEGYLTSWFQAMHAPEWLHGILILGLF 130 Query: 121 RGTSWVISVMLPPMMIFFPVFALLENFGYLPRVAFNMDRLFKKSGGHGKQALTMSMGFGC 180 RGTS VISVMLPPM IFFP+FALLEN+GYLPRVAFNMDRLFK+SG HGKQ+LTM+MGFGC Sbjct: 131 RGTSAVISVMLPPMAIFFPMFALLENYGYLPRVAFNMDRLFKRSGAHGKQSLTMAMGFGC 190 Query: 181 NAAAILSTRIIESPRERMLAILTNNFVPCNGRWPTLILLSSLFMVGGAAAGALRTLSTAX 240 NAAAI+STRIIESPRERMLAILTNNFVPCNGRWP LIL++SLFM G G+++T TA Sbjct: 191 NAAAIMSTRIIESPRERMLAILTNNFVPCNGRWPMLILMASLFMAAG-YTGSMQTFVTAG 249 Query: 241 XXXXXXXXXXXXXXXXSWVMSKTALRGVPTHYTLELPPYRRPQIWKTILITSKEKSLNVL 300 SWV+SKTAL+GVPTHYTLELPPYR+P+IW TI+ + +KS+ VL Sbjct: 250 VVVGMVVIGVIMTLTVSWVLSKTALKGVPTHYTLELPPYRKPKIWNTIVRATLDKSIYVL 309 Query: 301 TRAIVVAAPAGILTWILGNVMVGGDSVLNHMAAFFDPFANLLGLDGFIIMAFILGLPANE 360 RA VVAAPA LTW+L N+ +G S+L + F DPFA +LGLDGFI+ AFILGLPANE Sbjct: 310 KRAAVVAAPAAALTWLLANIFIGDTSLLMYFVNFLDPFAKMLGLDGFILAAFILGLPANE 369 Query: 361 IVLPILLMGYMSSGAMVDIDGLGGIKDIFLNHGWTWLTALNMMLFSLLHYPCGTTLINIY 420 IV+PILLM Y+S+GA+ +ID IK++FL +GWTWLTALN MLFSLLH+PCGTTL+NIY Sbjct: 370 IVIPILLMSYLSTGALTEIDDFNQIKNLFLENGWTWLTALNTMLFSLLHFPCGTTLVNIY 429 Query: 421 KETRSMKWAVLSAVIP 436 KET+S KW LS IP Sbjct: 430 KETKSAKWTFLSFAIP 445 >A7GLE0.1 A7GLE0_BACCN Ferrous iron transport B domain protein Length = 466 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 283/436 (64%), Positives = 344/436 (78%), Gaps = 2/436 (0%) Query: 1 MDSLLSAAKKLADKGAIRDEIVSGIYGVSAGICREAVTYKDQKKLASTYKLDSIVTSKIW 60 +D ++ A+ L K IRD+IVS IY S IC++AV Y + +L + KLD I TS IW Sbjct: 12 LDYIIQHAQTLT-KEDIRDDIVSDIYRTSKSICKDAVQYTNTDRLYRSEKLDKIFTSPIW 70 Query: 61 GFPIMLAGLGLVFWITIAGANYPSGWLASFFGWIEGYLTAGFEAVNAPAWLHGVLVLGLY 120 GFPIML L ++F++TIAGAN PS +A FFGW EG+LTA F+A++AP WLHG+L+LGL+ Sbjct: 71 GFPIMLGILSIIFYLTIAGANVPSDMIAEFFGWAEGHLTALFQAMHAPEWLHGILILGLF 130 Query: 121 RGTSWVISVMLPPMMIFFPVFALLENFGYLPRVAFNMDRLFKKSGGHGKQALTMSMGFGC 180 RGT VISVMLPPM IFFP+FALLEN+GYLPRVAFNMDRLFK++G HGKQ+LTM+MGFGC Sbjct: 131 RGTGAVISVMLPPMAIFFPMFALLENYGYLPRVAFNMDRLFKRTGAHGKQSLTMAMGFGC 190 Query: 181 NAAAILSTRIIESPRERMLAILTNNFVPCNGRWPTLILLSSLFMVGGAAAGALRTLSTAX 240 NAAAI+STRIIESPRERMLAILTNNFVPCNGRWPTLIL++SLFM G + +++TL TA Sbjct: 191 NAAAIMSTRIIESPRERMLAILTNNFVPCNGRWPTLILMASLFMAAGYTS-SMQTLVTAG 249 Query: 241 XXXXXXXXXXXXXXXXSWVMSKTALRGVPTHYTLELPPYRRPQIWKTILITSKEKSLNVL 300 SW +SKTAL+GVPTHYTLELPPYR+P+IW TI+ + +KS+ VL Sbjct: 250 VVVGMVVIGIIVTLTVSWALSKTALKGVPTHYTLELPPYRKPKIWNTIVRATLDKSIYVL 309 Query: 301 TRAIVVAAPAGILTWILGNVMVGGDSVLNHMAAFFDPFANLLGLDGFIIMAFILGLPANE 360 RA+VVAAPA ILTW+L N+ +G S+L + F DPFA LLGLDGFI+ AFILGLPANE Sbjct: 310 KRAVVVAAPAAILTWVLANIYIGDTSLLMYFVNFLDPFAKLLGLDGFILAAFILGLPANE 369 Query: 361 IVLPILLMGYMSSGAMVDIDGLGGIKDIFLNHGWTWLTALNMMLFSLLHYPCGTTLINIY 420 IV+PILLM Y+S+GA+ +I+ IK++FL HGWTWLTALN MLFSLLH+PCGTTL+NIY Sbjct: 370 IVIPILLMSYLSTGALTEIEDFNQIKNLFLEHGWTWLTALNTMLFSLLHFPCGTTLVNIY 429 Query: 421 KETRSMKWAVLSAVIP 436 KET+S KW LS IP Sbjct: 430 KETKSPKWTFLSFAIP 445 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.140 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,587,401,464 Number of extensions: 105406122 Number of successful extensions: 333952 Number of sequences better than 1.0e-05: 1280 Number of HSP's gapped: 331408 Number of HSP's successfully gapped: 1318 Length of query: 457 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 318 Effective length of database: 1,751,175,118 Effective search space: 556873687524 Effective search space used: 556873687524 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)