BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0563.0004.p (185 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8MKP2.1 A8MKP2_ALKOO Peptidoglycan-binding domain 1 protein 137 5e-31 Q24UE6.1 Q24UE6_DESHY Putative uncharacterized protein 126 1e-27 B8FRH6.1 B8FRH6_DESHD Putative uncharacterized protein 126 1e-27 A8S6U5.1 A8S6U5_9FIRM Putative uncharacterized protein 120 7e-26 Q036C8.1 Q036C8_LACC3 Putative uncharacterized protein 98 3e-19 >A8MKP2.1 A8MKP2_ALKOO Peptidoglycan-binding domain 1 protein Length = 762 Score = 137 bits (344), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 72/135 (53%), Positives = 85/135 (62%) Query: 39 LKVGRIEAAAHGTKCFTXXXXXXXXXXXXXXSLDDYQFLGSDVAKGVPNSDKDFGQNYKD 98 L +GR + AAHGTK F S+++YQF+ GVPNSDKDFG+NY D Sbjct: 305 LTMGRADFAAHGTKSFASTVTVLDGDKIVAASIEEYQFMAKASNTGVPNSDKDFGKNYAD 364 Query: 99 PAMVLASKKANAKYYSEHMKEEAKSTVSYDKNMAAIEKFATGKTIKSLEATLAAKSKEQM 158 P MVLASK NA YS +M +A STV KN AIE F TGKT+ LE TL+ + EQM Sbjct: 365 PNMVLASKLDNADTYSANMATKAGSTVHLLKNFNAIETFTTGKTVAELEKTLSNNTAEQM 424 Query: 159 VDAVSGATLVDTQGY 173 VDAV+ ATLVDT GY Sbjct: 425 VDAVTSATLVDTYGY 439 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 71/135 (52%), Positives = 85/135 (62%) Query: 39 LKVGRIEAAAHGTKCFTXXXXXXXXXXXXXXSLDDYQFLGSDVAKGVPNSDKDFGQNYKD 98 LK+GR + AAHGTK F S+++YQF+ GVPNSDKDFG+NY D Sbjct: 616 LKIGRADFAAHGTKSFASAVAILDGDKIVAASIEEYQFMAKASNTGVPNSDKDFGKNYAD 675 Query: 99 PAMVLASKKANAKYYSEHMKEEAKSTVSYDKNMAAIEKFATGKTIKSLEATLAAKSKEQM 158 P MVLASK NA YS +M +A STV N AIE F TGKT+ LE+ A K+ E+M Sbjct: 676 PNMVLASKLDNANTYSANMAAKAGSTVHLLTNFNAIEAFTTGKTVAELESLTATKTAEEM 735 Query: 159 VDAVSGATLVDTQGY 173 VDAV+ ATLVDT GY Sbjct: 736 VDAVTSATLVDTTGY 750 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 70/135 (51%), Positives = 86/135 (63%), Gaps = 1/135 (0%) Query: 39 LKVGRIEAAAHGTKCFTXXXXXXXXXXXXXXSLDDYQFLGSDVAKGVPNSDKDFGQNYKD 98 LK+GR + AAHGTK F S+++YQF+ GVPNSDKDFG+NY D Sbjct: 458 LKIGRADYAAHGTKSFANVTVALAGDKIVATSIEEYQFMAKASNTGVPNSDKDFGKNYAD 517 Query: 99 PAMVLASKKANAKYYSEHMKEEAKSTVSYDKNMAAIEKFATGKTIKSLEATLAAKSKEQM 158 P MVLASK NA YS +M +A STV N AIE F GKT+ L+A + AK+ +++ Sbjct: 518 PEMVLASKLVNADAYSANMAAKAGSTVHLRDNFKAIENFVKGKTVAELKA-VTAKTPQEV 576 Query: 159 VDAVSGATLVDTQGY 173 VDAVSGATLVDT GY Sbjct: 577 VDAVSGATLVDTYGY 591 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/135 (51%), Positives = 86/135 (63%), Gaps = 1/135 (0%) Query: 39 LKVGRIEAAAHGTKCFTXXXXXXXXXXXXXXSLDDYQFLGSDVAKGVPNSDKDFGQNYKD 98 LK+GR + AAHGTK F S+++YQF+ GVPNSDKDFG+NY D Sbjct: 147 LKIGRADYAAHGTKSFANVTVALVGDKIVATSIEEYQFMAKASNTGVPNSDKDFGKNYAD 206 Query: 99 PAMVLASKKANAKYYSEHMKEEAKSTVSYDKNMAAIEKFATGKTIKSLEATLAAKSKEQM 158 P MVLASK NA YS +M +A STV N AIE F GKT+ L+A + AK+ +++ Sbjct: 207 PEMVLASKLVNADAYSANMAAKAGSTVHLRDNFKAIENFVKGKTVAELKA-VTAKTPQEV 265 Query: 159 VDAVSGATLVDTQGY 173 VDAVSGATLVDT GY Sbjct: 266 VDAVSGATLVDTYGY 280 >Q24UE6.1 Q24UE6_DESHY Putative uncharacterized protein Length = 183 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/137 (49%), Positives = 88/137 (64%), Gaps = 1/137 (0%) Query: 38 PLKVGRIEAAAHGTKCFTXXXXXXXXXXXXXXSLDDYQFLGSDVAKGVPNSDKDFGQNYK 97 P+K+GR++AAAHGT SLD+YQF+ +D AKG+ N++ +NYK Sbjct: 35 PIKMGRVDAAAHGTNAVAIAVVAVQGDKIVGVSLDEYQFMPADKAKGLANTEGLAAKNYK 94 Query: 98 DPAMVLASKKANAKYYSEHMKEEAKSTVSYDKNMAAIEKFATGKTIKSLEATLAAKSKEQ 157 DPA VLASK N +YYS +MKE+A STV+Y N AI +F GKTI LE L++ E+ Sbjct: 95 DPAQVLASKIDNNEYYSNNMKEKAGSTVAYADNFNAIVEFCEGKTISELEGILSSTPAEK 154 Query: 158 M-VDAVSGATLVDTQGY 173 M VD VSG+TL DT GY Sbjct: 155 MPVDTVSGSTLADTAGY 171 >B8FRH6.1 B8FRH6_DESHD Putative uncharacterized protein Length = 183 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/137 (49%), Positives = 88/137 (64%), Gaps = 1/137 (0%) Query: 38 PLKVGRIEAAAHGTKCFTXXXXXXXXXXXXXXSLDDYQFLGSDVAKGVPNSDKDFGQNYK 97 P+K+GR++AAAHGT SLD+YQF+ +D AKG+ N++ +NYK Sbjct: 35 PIKMGRVDAAAHGTNAVAIAVVAVQGDKIVGVSLDEYQFMPADKAKGLANTEGLAAKNYK 94 Query: 98 DPAMVLASKKANAKYYSEHMKEEAKSTVSYDKNMAAIEKFATGKTIKSLEATLAAKSKEQ 157 DPA VLASK N +YYS +MKE+A STV+Y N AI +F GKTI LE L++ E+ Sbjct: 95 DPAQVLASKIDNNEYYSNNMKEKAGSTVAYADNFNAIVEFCEGKTISELEGILSSTPAEK 154 Query: 158 M-VDAVSGATLVDTQGY 173 M VD VSG+TL DT GY Sbjct: 155 MPVDTVSGSTLADTAGY 171 >A8S6U5.1 A8S6U5_9FIRM Putative uncharacterized protein Length = 463 Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 70/136 (51%), Positives = 83/136 (61%), Gaps = 4/136 (2%) Query: 39 LKVGRIEAAAHGTKCFTXXXXXXXXXXXXXXSLDDYQFLGSDVA-KGVPNSDKDFGQNYK 97 +++G+ AAAHGTKCFT LDD+QF +D VPNSD DF Y Sbjct: 165 IQIGQAYAAAHGTKCFTEAVAVVKDDVILAAYLDDFQFTSTDAGVTAVPNSDSDFAAGYA 224 Query: 98 DPAMVLASKKANAKYYSEHMKEEAKSTVSYDKNMAAIEKFATGKTIKSLEATLAAKSKEQ 157 + VL SK+ANA YYS+ M E+ STV+ D N AI+ FA GKTI LE +AAK E Sbjct: 225 E-GKVLMSKRANADYYSKMMAEKGGSTVALDANFDAIQNFAVGKTISELE-DVAAKGAEA 282 Query: 158 MVDAVSGATLVDTQGY 173 VDAVSGATLVDT GY Sbjct: 283 -VDAVSGATLVDTAGY 297 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 66/136 (48%), Positives = 78/136 (57%), Gaps = 5/136 (3%) Query: 39 LKVGRIEAAAHGTKCFTXXXXXXXXXXXXXXSLDDYQFLGSDVAK-GVPNSDKDFGQNYK 97 LK+ + AAHGTKCFT +D++QF GSD GVPNSD DFG Y Sbjct: 323 LKLNVVYGAAHGTKCFTSGAVATAGDTIVLSYIDEFQFAGSDAGVVGVPNSDSDFGAGYA 382 Query: 98 DPAMVLASKKANAKYYSEHMKEEAKSTVSYDKNMAAIEKFATGKTIKSLEATLAAKSKEQ 157 + VL SK+ NA YYS+ M E+A STVS D N AI+ G +I EA E+ Sbjct: 383 E-GKVLMSKRVNADYYSKMMAEKAGSTVSLDANYDAIQNHVNGMSIADAEAL---SKDEK 438 Query: 158 MVDAVSGATLVDTQGY 173 VDAVSGATLVDT GY Sbjct: 439 AVDAVSGATLVDTAGY 454 >Q036C8.1 Q036C8_LACC3 Putative uncharacterized protein Length = 366 Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/133 (42%), Positives = 80/133 (60%), Gaps = 2/133 (1%) Query: 42 GRIEAAAHGTKCFTXXXXXXXXXXXXXXSLDDYQFLGSDVAKGVPNSDKDFGQNYKDPAM 101 G++ AA HGT+ F LD++Q++ S GVPNS+ DFG+ K Sbjct: 223 GQVLAAPHGTQSFGIVTVAMQGDKIANVFLDEFQYMPSKDFGGVPNSNADFGKGIKS-GT 281 Query: 102 VLASKKANAKYYSEHMKEEAKSTVSYDKNMAAIEKFATGKTIKSLEATLA-AKSKEQMVD 160 VLASK+AN++ YS MK + K+T ++ +N AI++FA GKTI LE ++ K K+++ D Sbjct: 282 VLASKRANSEAYSAIMKSKGKATQTWQENSNAIDEFAKGKTIAELETAVSDLKGKKKVSD 341 Query: 161 AVSGATLVDTQGY 173 VSGAT DT GY Sbjct: 342 VVSGATFTDTSGY 354 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 5/138 (3%) Query: 39 LKVGRIEAAAHGTKCFTXXXXXXXXXXXXXXSLDDYQFL--GSDVAKGVPNSDKDFGQNY 96 L + ++ AA HG + F +D++Q++ SD GVPNS+KDFG++Y Sbjct: 61 LVMRQLYAAPHGKQSFAAVNVTLNGDTIVSAKIDEFQYVKKSSDWT-GVPNSNKDFGKSY 119 Query: 97 KDPAMVLASKKANAKYYSEHMKEEAKSTVSYDKNMAAIEKFATGKTIKSLEATLA-AKSK 155 ++A K N++ YS MK+EAK+T ++++N AI F GK I+ L+A +A K Sbjct: 120 PKGQFLIA-KAENSRPYSALMKKEAKATHTWEENETAITNFVKGKKIEDLKADVAKVKDT 178 Query: 156 EQMVDAVSGATLVDTQGY 173 +++ D VSGAT DT GY Sbjct: 179 KKVSDVVSGATFADTAGY 196 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.310 0.124 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 641,020,363 Number of extensions: 19360356 Number of successful extensions: 43402 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 43364 Number of HSP's successfully gapped: 26 Length of query: 185 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 58 Effective length of database: 1,864,227,298 Effective search space: 108125183284 Effective search space used: 108125183284 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 127 (53.5 bits)