BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0563.0001.p (306 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z4U6.1 C0Z4U6_BREBN Conserved hypothetical membrane protein 310 1e-82 B3KCX0.1 B3KCX0_9BACI Putative uncharacterized protein 239 3e-61 C2PWV5.1 C2PWV5_BACCE Transporter, EamA 225 4e-57 Q736Y2.1 Q736Y2_BACC1 Transporter, EamA family 224 8e-57 C2ZQF0.1 C2ZQF0_BACCE Transporter, EamA 223 1e-56 >C0Z4U6.1 C0Z4U6_BREBN Conserved hypothetical membrane protein Length = 307 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 147/241 (60%), Positives = 187/241 (77%) Query: 1 MIMLAYSLVCLIFGTTFLAIKIGVDAGTPPFFSAGLRFFVAGAVLFLFMAWRGKASFRLL 60 M++L Y ++CLIFGTTFLAIK+G+DAG PPFFS GLRFF+AG +LF FM W+ +A LL Sbjct: 1 MVLLNYVVMCLIFGTTFLAIKVGIDAGAPPFFSGGLRFFLAGVILFSFMLWKKQARLSLL 60 Query: 61 LRKEMLFTGAALTFGTFSALYWAEQYVSSGLAAVLSATGPMMILLMQTAFLRQKAPSYSL 120 KEML TG LTFGTF+ LYWAEQ+VSSG+AA+LSATGP+M++L+QT RQK P +L Sbjct: 61 FHKEMLLTGIGLTFGTFAPLYWAEQHVSSGIAAILSATGPLMVMLLQTGITRQKPPGIAL 120 Query: 121 LGCIIGFTGVLLLVLPSLAIDVSPLWIAGCAIVLTGEICYAAGAIYSKKVTRTFSGESPV 180 +GC++ F GV LL+LP + + S LW+ GC V+ GE+ Y+AGA+YS+ V + F SP+ Sbjct: 121 MGCLVAFVGVFLLILPGVTVSFSLLWLTGCIAVIFGELFYSAGAVYSRSVIQRFQDTSPI 180 Query: 181 ALNAAQMIYGGALLFVLSLFTENVHPGFLLSFETAGSLLYLTVVGSMVGHTLFYWLVAKT 240 ALNAAQM+YGGA+L VLSLFTE VH +L+ SLLYL VGSM+GH++FYWLVAKT Sbjct: 181 ALNAAQMMYGGAMLLVLSLFTEQVHMESMLTANAILSLLYLVFVGSMMGHSIFYWLVAKT 240 Query: 241 N 241 N Sbjct: 241 N 241 >B3KCX0.1 B3KCX0_9BACI Putative uncharacterized protein Length = 305 Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 126/241 (52%), Positives = 170/241 (70%) Query: 1 MIMLAYSLVCLIFGTTFLAIKIGVDAGTPPFFSAGLRFFVAGAVLFLFMAWRGKASFRLL 60 MI+ Y L+C IF TTFLAIKIGV+AG PPF SAGLRF +AGA +FL+M + KA LL Sbjct: 1 MIIFNYLLMCAIFSTTFLAIKIGVEAGLPPFLSAGLRFLLAGAFIFLWMILQRKAKPSLL 60 Query: 61 LRKEMLFTGAALTFGTFSALYWAEQYVSSGLAAVLSATGPMMILLMQTAFLRQKAPSYSL 120 LRKE L G TF TF+ LYWAEQ+V+SG+AA+LSATGPMMIL++Q+ +R+KA Sbjct: 61 LRKEFLLIGMTSTFLTFATLYWAEQHVASGIAAMLSATGPMMILMIQSVVMRKKARRSDY 120 Query: 121 LGCIIGFTGVLLLVLPSLAIDVSPLWIAGCAIVLTGEICYAAGAIYSKKVTRTFSGESPV 180 GC +GF GV +L++P LAI +WI C ++L GEI Y+ G++ ++K++ SP+ Sbjct: 121 WGCAVGFAGVCVLIMPKLAIGSDLIWILSCMVILIGEIGYSVGSLATRKLSFDMPDISPI 180 Query: 181 ALNAAQMIYGGALLFVLSLFTENVHPGFLLSFETAGSLLYLTVVGSMVGHTLFYWLVAKT 240 +NA QM++GG L +LSLF+E L + GS+LYLT+VGSM+GH+L+ WL+ T Sbjct: 181 TINAVQMMHGGLALLLLSLFSERGQWTGLTTMPAIGSVLYLTIVGSMLGHSLYAWLLKAT 240 Query: 241 N 241 N Sbjct: 241 N 241 >C2PWV5.1 C2PWV5_BACCE Transporter, EamA Length = 305 Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 114/241 (47%), Positives = 157/241 (65%) Query: 1 MIMLAYSLVCLIFGTTFLAIKIGVDAGTPPFFSAGLRFFVAGAVLFLFMAWRGKASFRLL 60 M++L Y LVC+IFGTTFL IKIG++AG PP FSAG+RFF+AG +L + + K L Sbjct: 1 MVILNYILVCIIFGTTFLTIKIGIEAGAPPLFSAGIRFFLAGLILIIIFKLKRKDIMPYL 60 Query: 61 LRKEMLFTGAALTFGTFSALYWAEQYVSSGLAAVLSATGPMMILLMQTAFLRQKAPSYSL 120 L K +++ G LTF TF+ LYWAEQY+SSGLAAVLSAT PMMILL+Q+ + K L Sbjct: 61 LSKRIIYAGFCLTFMTFATLYWAEQYISSGLAAVLSATAPMMILLLQSKRNKTKLQKEQL 120 Query: 121 LGCIIGFTGVLLLVLPSLAIDVSPLWIAGCAIVLTGEICYAAGAIYSKKVTRTFSGESPV 180 + +I TGVL + LP + +++ +W C ++L GE+ Y G+I SK++ SP Sbjct: 121 VALVIALTGVLFISLPGMHQELTFIWSIACLVILVGELFYGIGSIRSKEILSDLPNVSPF 180 Query: 181 ALNAAQMIYGGALLFVLSLFTENVHPGFLLSFETAGSLLYLTVVGSMVGHTLFYWLVAKT 240 +N QM YGG LL ++S+ E + L S+ +LYL VGS+ GH L+YWL++KT Sbjct: 181 LINGIQMFYGGVLLLIVSVVMEQPNLAVLTSWNVQWPILYLIFVGSIGGHGLYYWLLSKT 240 Query: 241 N 241 N Sbjct: 241 N 241 >Q736Y2.1 Q736Y2_BACC1 Transporter, EamA family Length = 305 Score = 224 bits (571), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 114/241 (47%), Positives = 155/241 (64%) Query: 1 MIMLAYSLVCLIFGTTFLAIKIGVDAGTPPFFSAGLRFFVAGAVLFLFMAWRGKASFRLL 60 M++ Y LVC+IFGTTFL IKIG+ AG PP FSAG+RFF+AG +L + + K + Sbjct: 1 MVIFNYILVCIIFGTTFLTIKIGIGAGAPPLFSAGIRFFLAGVILMIIFKLKRKEIMPHI 60 Query: 61 LRKEMLFTGAALTFGTFSALYWAEQYVSSGLAAVLSATGPMMILLMQTAFLRQKAPSYSL 120 K +++ G LTF TF+ LYWAEQY+SSGLAAVLSATGPMMILL+QT + K L Sbjct: 61 FSKRIIYAGFCLTFMTFATLYWAEQYISSGLAAVLSATGPMMILLLQTKRNKTKLQKEQL 120 Query: 121 LGCIIGFTGVLLLVLPSLAIDVSPLWIAGCAIVLTGEICYAAGAIYSKKVTRTFSGESPV 180 L II GV+ + LP + +VS +W C +++ GE+ Y G+IYSK++ SP Sbjct: 121 LALIIALIGVVFVSLPGMHQEVSFIWSIACFVLIIGELFYGIGSIYSKEILSDLQNVSPF 180 Query: 181 ALNAAQMIYGGALLFVLSLFTENVHPGFLLSFETAGSLLYLTVVGSMVGHTLFYWLVAKT 240 +N QM YGG LL ++S+ E + L S+ +LYL +GS+ GH L+YWL++KT Sbjct: 181 LINGIQMFYGGVLLLIVSVIVEQPNVTTLASWSVQWPILYLIFIGSIGGHGLYYWLLSKT 240 Query: 241 N 241 N Sbjct: 241 N 241 >C2ZQF0.1 C2ZQF0_BACCE Transporter, EamA Length = 305 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 113/241 (46%), Positives = 156/241 (64%) Query: 1 MIMLAYSLVCLIFGTTFLAIKIGVDAGTPPFFSAGLRFFVAGAVLFLFMAWRGKASFRLL 60 M++L Y LVC+IFGTTFL IKIG++AG PP FSAG+RFF+AG +L + + K L Sbjct: 1 MVILNYILVCIIFGTTFLTIKIGIEAGAPPLFSAGIRFFLAGLILIIIFKLKRKDIMSYL 60 Query: 61 LRKEMLFTGAALTFGTFSALYWAEQYVSSGLAAVLSATGPMMILLMQTAFLRQKAPSYSL 120 L K +++ G LTF TF+ LYWAEQY+SSGLAAVLSATGPMMILL+Q+ + K L Sbjct: 61 LSKRIIYAGFCLTFMTFATLYWAEQYISSGLAAVLSATGPMMILLLQSKRNKTKLQKEQL 120 Query: 121 LGCIIGFTGVLLLVLPSLAIDVSPLWIAGCAIVLTGEICYAAGAIYSKKVTRTFSGESPV 180 + +I GV + LP + +++ +W C ++L GE+ Y G+I SK++ SP Sbjct: 121 VALVIALIGVFCISLPGMHQELTFIWSIACLVILVGELFYGIGSIRSKEILSDLPNVSPF 180 Query: 181 ALNAAQMIYGGALLFVLSLFTENVHPGFLLSFETAGSLLYLTVVGSMVGHTLFYWLVAKT 240 +N QM YGG LL ++S+ E + L S+ +LYL VGS+ GH L+YWL++KT Sbjct: 181 LINGIQMFYGGVLLLIVSIVMEQPNLTILTSWNVQWPILYLIFVGSIGGHGLYYWLLSKT 240 Query: 241 N 241 N Sbjct: 241 N 241 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.141 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,523,965,133 Number of extensions: 63344849 Number of successful extensions: 213878 Number of sequences better than 1.0e-05: 1559 Number of HSP's gapped: 213260 Number of HSP's successfully gapped: 1559 Length of query: 306 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 171 Effective length of database: 1,788,859,178 Effective search space: 305894919438 Effective search space used: 305894919438 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)