BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0562.0014.p (288 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value O34309.1 PPS_BACSU Putative phosphoenolpyruvate synthase 488 e-136 C3BNE4.1 C3BNE4_9BACI Pyruvate phosphate dikinase PEP/pyruvate-b... 473 e-132 C3BCA1.1 C3BCA1_BACMY Pyruvate phosphate dikinase PEP/pyruvate-b... 470 e-131 C3AUL5.1 C3AUL5_BACMY Pyruvate phosphate dikinase PEP/pyruvate-b... 469 e-130 B3KDE7.1 B3KDE7_9BACI Pyruvate phosphate dikinase PEP/pyruvate-b... 467 e-130 >O34309.1 PPS_BACSU Putative phosphoenolpyruvate synthase Length = 866 Score = 488 bits (1256), Expect = e-136, Method: Compositional matrix adjust. Identities = 229/284 (80%), Positives = 253/284 (89%) Query: 4 MNASRWINENMNEWLGEKNAADTLSQSVRDNVTSEMGLELMDVADVIRPYPEVIDYLQYV 63 MNAS WINE MNEWLGEKNAADTLSQSV N+TSEMGL L+DVADVIRPYPEVIDYLQ+V Sbjct: 491 MNASLWINEKMNEWLGEKNAADTLSQSVPHNITSEMGLALLDVADVIRPYPEVIDYLQHV 550 Query: 64 KADNFLDELHKFDGGQETRDAIYAFLQKYGMHCTGEIDITRTRWSEKPSMLVPMILGNIR 123 K DNFLDEL KFDGG +TRDAIY +L KYGM CTGEIDITRTRWSEKP+ LVPMIL NI+ Sbjct: 551 KDDNFLDELAKFDGGSKTRDAIYDYLSKYGMRCTGEIDITRTRWSEKPTTLVPMILNNIK 610 Query: 124 NFEPHAGGLKFEHGRQEAMAKEQELLERLKGLPDGETKAKETKRMIDIVRNFSGYREYPK 183 NFEP+ G KFE GRQEA+ KEQELL+RLK LPDGE KAKETKR IDI+RNFSG+REYPK Sbjct: 611 NFEPNVGHRKFEQGRQEALKKEQELLDRLKQLPDGEQKAKETKRAIDIIRNFSGFREYPK 670 Query: 184 YAWMNHYFIYKQALLKEAARLVQAGVIHEKEDIYHLSFEELHEAVRTHKLDYQIISKRKE 243 Y +N YF+YKQALLKEA +L++AGVIHEKEDIY+L+FEELHE VRTHKLDYQIIS RK+ Sbjct: 671 YGMVNRYFVYKQALLKEAEQLIEAGVIHEKEDIYYLTFEELHEVVRTHKLDYQIISTRKD 730 Query: 244 EYKLYDKLTPPRVITSDGEIIAGEYKRENLPAGAIVGLAVSSEI 287 EY LY+KL+PPRVITSDGEI+ GEYKRENLPAGAIVGL VSS + Sbjct: 731 EYTLYEKLSPPRVITSDGEIVTGEYKRENLPAGAIVGLPVSSGV 774 >C3BNE4.1 C3BNE4_9BACI Pyruvate phosphate dikinase PEP/pyruvate-binding Length = 876 Score = 473 bits (1218), Expect = e-132, Method: Compositional matrix adjust. Identities = 224/287 (78%), Positives = 251/287 (87%) Query: 1 MAVMNASRWINENMNEWLGEKNAADTLSQSVRDNVTSEMGLELMDVADVIRPYPEVIDYL 60 MA M+AS WINE MN+WLGEKN ADTLS SV +N+TSEMGL L+DVADVIRPYPEVI+YL Sbjct: 498 MAAMDASTWINEKMNKWLGEKNVADTLSLSVPNNITSEMGLALLDVADVIRPYPEVINYL 557 Query: 61 QYVKADNFLDELHKFDGGQETRDAIYAFLQKYGMHCTGEIDITRTRWSEKPSMLVPMILG 120 Q+VK DNFLDEL KFDGGQET+ IY +L KYGM CT EIDIT+TRWSEKP+ L+PMIL Sbjct: 558 QHVKDDNFLDELVKFDGGQETQGTIYDYLSKYGMRCTREIDITKTRWSEKPTTLIPMILS 617 Query: 121 NIRNFEPHAGGLKFEHGRQEAMAKEQELLERLKGLPDGETKAKETKRMIDIVRNFSGYRE 180 NI+NFEP+A KFE GRQ A+ KEQELL+RLK LPDGE K KETKRMID++RNF GYRE Sbjct: 618 NIKNFEPNASNQKFEQGRQAALKKEQELLDRLKQLPDGEQKVKETKRMIDLIRNFIGYRE 677 Query: 181 YPKYAWMNHYFIYKQALLKEAARLVQAGVIHEKEDIYHLSFEELHEAVRTHKLDYQIISK 240 YPKY +N YF+YKQALLKEA +LVQA VIHEKEDIY+L+FEELHE VRT+KLDYQIISK Sbjct: 678 YPKYGMVNRYFVYKQALLKEAEQLVQANVIHEKEDIYYLTFEELHEVVRTNKLDYQIISK 737 Query: 241 RKEEYKLYDKLTPPRVITSDGEIIAGEYKRENLPAGAIVGLAVSSEI 287 RK+EYKLY+KLTPPRVITSDGEIIAGEYKRENLPA AIVGL VSS + Sbjct: 738 RKDEYKLYEKLTPPRVITSDGEIIAGEYKRENLPAEAIVGLPVSSGV 784 >C3BCA1.1 C3BCA1_BACMY Pyruvate phosphate dikinase PEP/pyruvate-binding Length = 876 Score = 470 bits (1210), Expect = e-131, Method: Compositional matrix adjust. Identities = 223/287 (77%), Positives = 252/287 (87%) Query: 1 MAVMNASRWINENMNEWLGEKNAADTLSQSVRDNVTSEMGLELMDVADVIRPYPEVIDYL 60 MA M+AS WINE MN+WLGEKN ADTLS S +N+TSEMGL L+DVADVIRPYPEVI+YL Sbjct: 498 MAAMDASSWINEKMNKWLGEKNVADTLSLSAPNNITSEMGLALLDVADVIRPYPEVINYL 557 Query: 61 QYVKADNFLDELHKFDGGQETRDAIYAFLQKYGMHCTGEIDITRTRWSEKPSMLVPMILG 120 Q+VK DNFLDEL KFDGGQE +DAIYA+L KYGM C GEIDIT+TRWSEKP+ LV MIL Sbjct: 558 QHVKDDNFLDELVKFDGGQEIQDAIYAYLNKYGMRCAGEIDITKTRWSEKPTTLVHMILN 617 Query: 121 NIRNFEPHAGGLKFEHGRQEAMAKEQELLERLKGLPDGETKAKETKRMIDIVRNFSGYRE 180 NI+ F+P++G KFE GRQEA+ KEQELL+RLK LPDG+ KAKETKRMI ++RNF GYRE Sbjct: 618 NIKEFDPNSGNRKFEQGRQEALKKEQELLDRLKQLPDGKRKAKETKRMISLIRNFIGYRE 677 Query: 181 YPKYAWMNHYFIYKQALLKEAARLVQAGVIHEKEDIYHLSFEELHEAVRTHKLDYQIISK 240 YPKY +N YFIYKQALLKEA +LVQA VIHEKEDIY+L+FEELHE VRT+KLDYQIISK Sbjct: 678 YPKYGMINRYFIYKQALLKEAEQLVQASVIHEKEDIYYLTFEELHEVVRTNKLDYQIISK 737 Query: 241 RKEEYKLYDKLTPPRVITSDGEIIAGEYKRENLPAGAIVGLAVSSEI 287 RK+EYKLY KLTPPRVITSDGEIIAGEYKRENLPA AI+GL+VSS + Sbjct: 738 RKDEYKLYKKLTPPRVITSDGEIIAGEYKRENLPAEAILGLSVSSGV 784 >C3AUL5.1 C3AUL5_BACMY Pyruvate phosphate dikinase PEP/pyruvate-binding Length = 876 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 223/287 (77%), Positives = 251/287 (87%) Query: 1 MAVMNASRWINENMNEWLGEKNAADTLSQSVRDNVTSEMGLELMDVADVIRPYPEVIDYL 60 MA M+AS WINE MN+WLGEKN ADTLS S +N+TSEMGL L+DVADVIRPYPEVI+YL Sbjct: 498 MAAMDASSWINEKMNKWLGEKNVADTLSLSAPNNITSEMGLALLDVADVIRPYPEVINYL 557 Query: 61 QYVKADNFLDELHKFDGGQETRDAIYAFLQKYGMHCTGEIDITRTRWSEKPSMLVPMILG 120 Q+VK DNFLDEL KFDGGQE +DAIYA+L KYGM C GEIDIT+TRWSEKP+ LV MIL Sbjct: 558 QHVKDDNFLDELVKFDGGQEIQDAIYAYLNKYGMRCAGEIDITKTRWSEKPTTLVHMILN 617 Query: 121 NIRNFEPHAGGLKFEHGRQEAMAKEQELLERLKGLPDGETKAKETKRMIDIVRNFSGYRE 180 NI+ F+P++G KFE GRQEA+ KEQELL+RLK LPDG+ KAKETKRMI ++RNF GYRE Sbjct: 618 NIKEFDPNSGNRKFEQGRQEALKKEQELLDRLKQLPDGKRKAKETKRMISLIRNFIGYRE 677 Query: 181 YPKYAWMNHYFIYKQALLKEAARLVQAGVIHEKEDIYHLSFEELHEAVRTHKLDYQIISK 240 YPKY +N YFIYKQALLKEA +LVQA VIHEKEDIY+L+FEELHE VRT+KLDYQIISK Sbjct: 678 YPKYGMINRYFIYKQALLKEAEQLVQASVIHEKEDIYYLTFEELHEVVRTNKLDYQIISK 737 Query: 241 RKEEYKLYDKLTPPRVITSDGEIIAGEYKRENLPAGAIVGLAVSSEI 287 RK+EYKLY KLTPPRVITSDGEIIAGEYKRENLPA AI+GL VSS + Sbjct: 738 RKDEYKLYKKLTPPRVITSDGEIIAGEYKRENLPAEAILGLPVSSGV 784 >B3KDE7.1 B3KDE7_9BACI Pyruvate phosphate dikinase PEP/pyruvate-binding Length = 871 Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust. Identities = 220/287 (76%), Positives = 250/287 (87%) Query: 1 MAVMNASRWINENMNEWLGEKNAADTLSQSVRDNVTSEMGLELMDVADVIRPYPEVIDYL 60 MA MNAS WINE MNEWLGEKNAADTLSQSV N+TSEMGL L+DVAD IRPYPEVIDYL Sbjct: 493 MAAMNASSWINEKMNEWLGEKNAADTLSQSVPHNITSEMGLALLDVADAIRPYPEVIDYL 552 Query: 61 QYVKADNFLDELHKFDGGQETRDAIYAFLQKYGMHCTGEIDITRTRWSEKPSMLVPMILG 120 Q VK D+FLD+L FDGG+E RDAI FL KYGM C GEIDITRTRWSEKP+ L+P+I+G Sbjct: 553 QQVKHDDFLDKLVTFDGGREARDAIRDFLNKYGMRCAGEIDITRTRWSEKPTTLIPLIMG 612 Query: 121 NIRNFEPHAGGLKFEHGRQEAMAKEQELLERLKGLPDGETKAKETKRMIDIVRNFSGYRE 180 NI+NFEP+A KFE GRQEA+ KEQELLERL LPDGE KA ETKRMID++RNF GYRE Sbjct: 613 NIKNFEPNASHRKFEQGRQEALNKEQELLERLSRLPDGEQKAAETKRMIDLIRNFIGYRE 672 Query: 181 YPKYAWMNHYFIYKQALLKEAARLVQAGVIHEKEDIYHLSFEELHEAVRTHKLDYQIISK 240 YPKY +N YF+YKQALLKEA +LV+AGVIH++EDIY+LSFEELH+ VRT+KLDY++I+K Sbjct: 673 YPKYGMVNRYFVYKQALLKEAEQLVEAGVIHDREDIYYLSFEELHDVVRTNKLDYRMINK 732 Query: 241 RKEEYKLYDKLTPPRVITSDGEIIAGEYKRENLPAGAIVGLAVSSEI 287 RK+EYKLY+KLTPPRVITSDGEII GEYKREN+PA AIVGL VSS + Sbjct: 733 RKDEYKLYEKLTPPRVITSDGEIIVGEYKRENIPAEAIVGLPVSSGV 779 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,762,401,381 Number of extensions: 73959107 Number of successful extensions: 200418 Number of sequences better than 1.0e-05: 143 Number of HSP's gapped: 200386 Number of HSP's successfully gapped: 143 Length of query: 288 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 154 Effective length of database: 1,798,280,193 Effective search space: 276935149722 Effective search space used: 276935149722 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)