BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0562.0012.p
         (67 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KAF8.1 B3KAF8_9BACI ABC transporter related                         127   5e-28
B0G7E8.1 B0G7E8_9FIRM Putative uncharacterized protein                 89   1e-16
C4Z8F0.1 C4Z8F0_9FIRM Putative uncharacterized protein                 87   6e-16
C0G080.1 C0G080_9FIRM Putative uncharacterized protein                 86   1e-15
A7AZ32.1 A7AZ32_RUMGN Putative uncharacterized protein                 74   6e-12

>B3KAF8.1 B3KAF8_9BACI ABC transporter related
          Length = 269

 Score =  127 bits (318), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 66/67 (98%)

Query: 1   MAEQINELARYFDSQFIIATHSPFVLGTLHAKIYNLDARPLQTAEWFELDNVQFFYQFFN 60
           +AEQ+N+LARYFDSQFIIATHSPFVLGTLHAKIYNLDA+ LQTAEWFELDNVQFFY+FF+
Sbjct: 203 LAEQMNDLARYFDSQFIIATHSPFVLGTLHAKIYNLDAKILQTAEWFELDNVQFFYRFFH 262

Query: 61  KHKQLFE 67
           KH++LFE
Sbjct: 263 KHQRLFE 269


>B0G7E8.1 B0G7E8_9FIRM Putative uncharacterized protein
          Length = 275

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 52/67 (77%)

Query: 1   MAEQINELARYFDSQFIIATHSPFVLGTLHAKIYNLDARPLQTAEWFELDNVQFFYQFFN 60
           +AE+IN++AR    QFIIATHSPF+LGTL+A+IYNLD      A+W +LDNV++FY FF 
Sbjct: 205 LAEEINKMARLLGCQFIIATHSPFMLGTLNAQIYNLDTEEYDIAKWSDLDNVRYFYNFFK 264

Query: 61  KHKQLFE 67
           KH+  F+
Sbjct: 265 KHEDEFK 271


>C4Z8F0.1 C4Z8F0_9FIRM Putative uncharacterized protein
          Length = 272

 Score = 86.7 bits (213), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 53/67 (79%)

Query: 1   MAEQINELARYFDSQFIIATHSPFVLGTLHAKIYNLDARPLQTAEWFELDNVQFFYQFFN 60
           +AE+IN++AR  + QFIIATHSPF+LGTL+AKIYNLD +     +W +LDNV++FY FF 
Sbjct: 205 LAEEINKMARLLECQFIIATHSPFMLGTLNAKIYNLDTKEYDVTKWSDLDNVRYFYNFFK 264

Query: 61  KHKQLFE 67
           KH+  F+
Sbjct: 265 KHEDEFK 271


>C0G080.1 C0G080_9FIRM Putative uncharacterized protein
          Length = 275

 Score = 85.5 bits (210), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 52/67 (77%)

Query: 1   MAEQINELARYFDSQFIIATHSPFVLGTLHAKIYNLDARPLQTAEWFELDNVQFFYQFFN 60
           +AE+IN++AR  + QFIIATHSPF+LGTL+AKIYNLD       +W +LDNV++FY FF 
Sbjct: 205 LAEEINKMARLLECQFIIATHSPFMLGTLNAKIYNLDTEEYDVTKWSDLDNVRYFYNFFK 264

Query: 61  KHKQLFE 67
           KH+  F+
Sbjct: 265 KHEDEFK 271


>A7AZ32.1 A7AZ32_RUMGN Putative uncharacterized protein
          Length = 284

 Score = 73.6 bits (179), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 41/62 (66%)

Query: 5   INELARYFDSQFIIATHSPFVLGTLHAKIYNLDARPLQTAEWFELDNVQFFYQFFNKHKQ 64
           I + AR+F  QF+IATHSPFVL    AKIY+LD  P+    W EL+NV+ +Y FF KH  
Sbjct: 223 IEDSARFFGCQFVIATHSPFVLAIRGAKIYDLDEEPVDVKRWTELENVRAYYDFFKKHAS 282

Query: 65  LF 66
            F
Sbjct: 283 EF 284


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.328    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 382,827,414
Number of extensions: 11550745
Number of successful extensions: 29065
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 29065
Number of HSP's successfully gapped: 11
Length of query: 67
Length of database: 3,060,696,203
Length adjustment: 39
Effective length of query: 28
Effective length of database: 2,693,276,618
Effective search space: 75411745304
Effective search space used: 75411745304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 125 (52.8 bits)