BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0562.0011.p
         (160 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0ZD60.1 C0ZD60_BREBN Putative hydrolase                              154   3e-36
B3K4H7.1 B3K4H7_9BACI Alpha/beta hydrolase fold                       143   6e-33
B5GZ72.1 B5GZ72_STRCL Putative uncharacterized protein                100   5e-20
C0ZJ24.1 C0ZJ24_BREBN Pimeloyl-CoA synthesis protein                   98   2e-19
Q8TJZ1.1 Q8TJZ1_METAC Hydrolase                                        97   7e-19

>C0ZD60.1 C0ZD60_BREBN Putative hydrolase
          Length = 249

 Score =  154 bits (388), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 67/128 (52%), Positives = 94/128 (73%)

Query: 1   MDLFYEIEGDGSPIVMIHSGGVDSRVWRYMVPELARSFKVITFDGRGTGRSPAMLEPTSL 60
           MDL+YE+ G+G P+V++HSGG D R W ++ P LA+ ++VI FDGRG G+SP+  E  + 
Sbjct: 1   MDLYYEVSGEGKPVVLLHSGGADLRDWAFVAPILAKHYQVIAFDGRGCGKSPSPTETANY 60

Query: 61  VEDLRKLLEHLGLERVTLVGHSMGGQVATDFTLSYPSMVEQLVVLAPSLTGYVYSQEFTN 120
           VEDL  +++H  L+  TLVGHS+GG++ATDF L+YP  V +LV++APSLTGY  SQ FT 
Sbjct: 61  VEDLLSVMDHFQLDEATLVGHSIGGRIATDFALTYPQRVSKLVLIAPSLTGYTPSQPFTE 120

Query: 121 YMTSVNAA 128
           +M  +  A
Sbjct: 121 WMQKIQEA 128


>B3K4H7.1 B3K4H7_9BACI Alpha/beta hydrolase fold
          Length = 249

 Score =  143 bits (360), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 71/130 (54%), Positives = 95/130 (73%)

Query: 1   MDLFYEIEGDGSPIVMIHSGGVDSRVWRYMVPELARSFKVITFDGRGTGRSPAMLEPTSL 60
           MDL YE+ G+G PIV++HSGG D R W Y+VP LA  F VI FDGRG GRSP+  +P + 
Sbjct: 1   MDLHYEVHGNGKPIVLVHSGGADLRDWSYLVPLLAEHFCVIAFDGRGAGRSPSPAQPPNY 60

Query: 61  VEDLRKLLEHLGLERVTLVGHSMGGQVATDFTLSYPSMVEQLVVLAPSLTGYVYSQEFTN 120
           VEDL  LL+HL + +  +VGHSMGG++AT+F + YP  V +L+V+AP+L+G+ YS+E   
Sbjct: 61  VEDLLSLLDHLDISQAAIVGHSMGGRIATEFAIHYPERVSELIVIAPALSGFPYSEEMQT 120

Query: 121 YMTSVNAAAP 130
           YM  V+ AAP
Sbjct: 121 YMLGVSTAAP 130


>B5GZ72.1 B5GZ72_STRCL Putative uncharacterized protein
          Length = 254

 Score =  100 bits (248), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 1/120 (0%)

Query: 9   GDGSPIVMIHSGGVDSRVWRYMVPELARSFKVITFDGRGTGRSPAMLEPTSLVEDLRKLL 68
           GDG P+V++H G  DSR+W ++V  L    +VI +D RG GRSP+   P SL+ DL  +L
Sbjct: 23  GDGPPVVLLHPGVGDSRIWDHVVERLVPDHRVIRYDVRGYGRSPSPTGPYSLLPDLVAVL 82

Query: 69  EHLGLERVTLVGHSMGGQVATDFTLSYPSMVEQLVVLAPSLTGYVYSQEFTNYMTSVNAA 128
           +H GL+R  LVG SMGG  A    +  P  V  LV+L P++ G+ +S++ T Y   ++A+
Sbjct: 83  DHFGLDRAALVGCSMGGGAALTLAVEAPERVRSLVLLCPAVGGFPWSED-TEYDDLIHAS 141


>C0ZJ24.1 C0ZJ24_BREBN Pimeloyl-CoA synthesis protein
          Length = 277

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 77/115 (66%)

Query: 3   LFYEIEGDGSPIVMIHSGGVDSRVWRYMVPELARSFKVITFDGRGTGRSPAMLEPTSLVE 62
           ++YE+ G+G P+++IH   +D+R+W   +   A+++KV+ FD RG G++ A   P +L +
Sbjct: 19  IYYEVAGEGEPLLLIHGFNLDTRLWDAQLQAFAQTYKVVRFDIRGFGKTLATDVPYTLYD 78

Query: 63  DLRKLLEHLGLERVTLVGHSMGGQVATDFTLSYPSMVEQLVVLAPSLTGYVYSQE 117
           D++ +L+ LG+E+  + G S GG VA +F L+YP MV  L+++A  L G+  S++
Sbjct: 79  DVKAVLQGLGIEKAHVAGLSFGGMVAQEFALAYPQMVNSLILVASGLFGHPRSEQ 133


>Q8TJZ1.1 Q8TJZ1_METAC Hydrolase
          Length = 282

 Score = 96.7 bits (239), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 72/110 (65%)

Query: 3   LFYEIEGDGSPIVMIHSGGVDSRVWRYMVPELARSFKVITFDGRGTGRSPAMLEPTSLVE 62
           L+YEIEG+G  +V+IH+G VDSR+W        + ++V+ FD  G G+S  +  P S  +
Sbjct: 25  LYYEIEGNGETLVLIHAGFVDSRMWDEQWKAFTQHYRVLRFDMLGFGKSDPVTGPVSRRQ 84

Query: 63  DLRKLLEHLGLERVTLVGHSMGGQVATDFTLSYPSMVEQLVVLAPSLTGY 112
           DL +LL+ LG+E   ++G S+GG+ A DFTL +P +V  L+V++ +  G+
Sbjct: 85  DLYRLLQELGIEHARILGCSLGGETAIDFTLEHPELVRSLIVVSAAPGGF 134


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 975,216,209
Number of extensions: 37713167
Number of successful extensions: 120992
Number of sequences better than 1.0e-05: 3335
Number of HSP's gapped: 122724
Number of HSP's successfully gapped: 3336
Length of query: 160
Length of database: 3,060,696,203
Length adjustment: 121
Effective length of query: 39
Effective length of database: 1,920,753,388
Effective search space: 74909382132
Effective search space used: 74909382132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)