BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0562.0005.p (195 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D6C1.1 B1D6C1_9BACL Transcriptional regulator, AraC family 113 1e-23 A8STG6.1 A8STG6_9FIRM Putative uncharacterized protein 66 1e-09 A7VPJ4.1 A7VPJ4_9CLOT Putative uncharacterized protein 64 8e-09 A9U7B6.1 A9U7B6_PHYPA Predicted protein 64 1e-08 B0MQ29.1 B0MQ29_9FIRM Putative uncharacterized protein 62 2e-08 >B1D6C1.1 B1D6C1_9BACL Transcriptional regulator, AraC family Length = 221 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 83/143 (58%) Query: 31 IQSQTVFVEPNTFIIFNKNSPYFYRDAEWPLVHDWFHFEMEAADAFFDRLNLPLDTLIKA 90 I+ + V+ ++FI+F ++P+ Y E P V+DWFH E LN PLDT + A Sbjct: 3 IRGVRILVDSDSFILFQPDTPHSYMQFELPFVNDWFHCRGEELSGLLAELNFPLDTPVPA 62 Query: 91 YDPFYISRKVNEIHWENLQNGTFRNEIIDYTLRCLFMKLSDIRNHLEPHNQISKYYDQFL 150 DP ISR + E+H Q G R++I+D +R L MKLS++ + + +Y QF Sbjct: 63 VDPMLISRSIMELHRVQKQGGHLRDQILDTDIRALLMKLSNLHELSQHPERPGRYIRQFS 122 Query: 151 NLRNEVFSTPSTWYTVEFLADKM 173 LR+E++++P + TVE LAD++ Sbjct: 123 ELRDELYNSPQSHVTVEMLADRV 145 >A8STG6.1 A8STG6_9FIRM Putative uncharacterized protein Length = 264 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 85/173 (49%), Gaps = 6/173 (3%) Query: 1 VIHPEGFTVDRPDGSGDYVFLFFRSQMELRIQSQTVFVEPNTFIIFNKNSPYFYRDAEWP 60 V H F + RPDGSGD + + F++ L + + V P++ I+++K + Y+ Sbjct: 11 VRHKGNFEICRPDGSGDDLLVIFKTSAVLIQNGEEITVSPDSLILYSKGTMQHYKTLCGS 70 Query: 61 LVHDWFHFEMEAADAFFDRLNLPLDTLIKAYDPFYISRKVNEIHWENLQNGTFRNEIIDY 120 V+ + HF+ + + + DTLI + D I + + EN+ + T R + + Sbjct: 71 YVNHFVHFDTDDTELMN---GIKTDTLITSADIPAIEELLTILCRENVADSTNRKQYENM 127 Query: 121 TLRCLFMKLSDIRNHLEPHNQISKYYDQFLNLRNEVFSTPSTWYTVEFLADKM 173 ++ + MK+S+ + + P + S+ LR +++S ++ + LA+KM Sbjct: 128 LMQMILMKISE--SSINPDSDKSR-ISALEMLRTDIYSNAGSYSNIYQLAEKM 177 >A7VPJ4.1 A7VPJ4_9CLOT Putative uncharacterized protein Length = 264 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 91/177 (51%), Gaps = 8/177 (4%) Query: 1 VIHPEGFTVDRPDGSGDYVFLFFRSQMELRIQSQTVF-VEPNTFIIFNKNSPYFYRDAEW 59 +H + F + RP GSGDY+FL +S ++++ ++ + + +++ K +P F+ +A Sbjct: 10 AVHEKNFRIRRPSGSGDYLFLHLKSPTRFFLENEKIYDGKTDEIMLYRKGTPQFFGEAAG 69 Query: 60 PL-VHDWFHFEMEAA--DAFFDRLNLPLDTLIKA--YDPFYISRKVNEIHWENLQNGTFR 114 V D+ HF+ ++ + F L+L D ++ +PF +S N I +E L ++ Sbjct: 70 ITHVDDFMHFDTSSSEDENFIQGLSLKYDEPVRLPYINPF-MSIHQN-ICFEFLNKNHYQ 127 Query: 115 NEIIDYTLRCLFMKLSDIRNHLEPHNQISKYYDQFLNLRNEVFSTPSTWYTVEFLAD 171 ID L+ +KL + N + N Y++F LR ++S+P +TV+ +A Sbjct: 128 EIAIDCLLKYFLIKLEECMNEKKFRNYDITLYERFNQLRLAIYSSPQQAWTVKKMAS 184 >A9U7B6.1 A9U7B6_PHYPA Predicted protein Length = 258 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 6/171 (3%) Query: 3 HPEGFTVDRPDGSGDYVFLFFRSQMELRIQSQTVFVEPNTFIIFNKNSPYFYRDAEWPLV 62 HP F D P G ++ + ++ E +Q + N ++F YR V Sbjct: 14 HPGDFIYDIPAGHDFWLLILTQTPAEFWVQGEIREYPANCAVLFPPRQKIMYRACSGQFV 73 Query: 63 HDWFHFEMEAADAFFDRLNLPLDTLIKAYDPFYISRKVNEIHWENLQNGTFRNEIIDYTL 122 +DW FE + +++ LP I DP Y + + EN + +R IDY Sbjct: 74 NDWVRFETD--ESYVLETTLPRGVPIPMPDPGYCRQLFQLLATENFFSCDYRELSIDYLF 131 Query: 123 RCLFMKLSDIRNHLEPHNQISKYYDQFLNLRNEVFSTPSTWYTVEFLADKM 173 R LF KL + E S +Y + LNLR + + P ++V +AD + Sbjct: 132 RILFNKLLEAFQSKEN----SPHYQKLLNLRKAIHNRPGAEWSVPSMADDV 178 >B0MQ29.1 B0MQ29_9FIRM Putative uncharacterized protein Length = 264 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 5/170 (2%) Query: 5 EGFTVDRPDGSGDYVFLFFRSQMELRIQSQTVFVEPNTFIIFNKNSPYFYRDAEWPLVHD 64 E F +DRP G G + L ++ ++ V+ N+FI+ + ++P +Y E D Sbjct: 17 ENFIMDRPKGPGAVLLLLIKTPAVFKVGGVQYQVKENSFILMSPDTPCYYTAQENVYTDD 76 Query: 65 WFHFEMEAADA-FFDRLNLPLDTLIKAYDPFYISRKVNEIHWENLQNGTFRNEIIDYTLR 123 W +FE + D + ++L +P+D + D +S V+ + +E+ EI + Sbjct: 77 WVYFENDDWDKEYVEKLGIPMDIPVYLGDMDELSHLVHILVYEHYSGAVNSEEIEKKYID 136 Query: 124 CLFMKLSDI---RNHLEPHNQISKYYDQFLNLRNEVFSTPSTWYTVEFLA 170 LF+ LS RN + Q+S+ + +F +R +F+ P V+ LA Sbjct: 137 VLFLMLSRTLKSRNCMSS-KQLSERHYRFTQIRTMIFTMPDHVGNVDDLA 185 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.142 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,144,673,509 Number of extensions: 49874189 Number of successful extensions: 115039 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 115036 Number of HSP's successfully gapped: 6 Length of query: 195 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 67 Effective length of database: 1,854,806,283 Effective search space: 124272020961 Effective search space used: 124272020961 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 127 (53.5 bits)