BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0562.0002.p (386 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZG77.1 C0ZG77_BREBN Probable phosphoenolpyruvate synthase EC=2... 659 0.0 Q65IQ7.1 Q65IQ7_BACLD Pps 651 0.0 Q62U64.2 Q62U64_BACLD Phosphoenolpyruvate synthase 651 0.0 O34309.1 PPS_BACSU Putative phosphoenolpyruvate synthase 649 0.0 B3KDE7.1 B3KDE7_9BACI Pyruvate phosphate dikinase PEP/pyruvate-b... 634 e-180 >C0ZG77.1 C0ZG77_BREBN Probable phosphoenolpyruvate synthase EC=2.7.9.2 Length = 868 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/370 (84%), Positives = 340/370 (91%) Query: 1 MSSLVLGFQEMDKTQLWLVGGKGLHLGELSKIQGIQVPEGFCVTTAGYQKAIEQNETYHA 60 MSSLVLGFQEM KTQL LVGGKGLHLGELSKIQGIQVPEGFCVTT GYQK +E N+ YHA Sbjct: 1 MSSLVLGFQEMKKTQLLLVGGKGLHLGELSKIQGIQVPEGFCVTTVGYQKMVESNDMYHA 60 Query: 61 LLDQLTRLKVEDRAQIGEISRQIRQIITEAEIPSDVVKAVAQYLSLFGEKYAYAVRSSAT 120 LLDQLT LKV+DR Q+GEISR+IR+ I EAEIPSDVVKAV YLS FGE++AYAVRSSAT Sbjct: 61 LLDQLTTLKVQDREQVGEISRKIRESIMEAEIPSDVVKAVTHYLSQFGEEHAYAVRSSAT 120 Query: 121 AEDLPHASFAGQQDTYLNIIGKDAILQHISKCWASLFTERAVIYRMQNGFDHRQVYLSVV 180 AEDLPHASFAGQQDTYLNIIGK+AIL+HISKCWASLFT+RAVIYRMQNGFDH VYLSV+ Sbjct: 121 AEDLPHASFAGQQDTYLNIIGKEAILRHISKCWASLFTDRAVIYRMQNGFDHSHVYLSVI 180 Query: 181 IQKMVFPQASGIVFTADPMTSNRKLLSIDASFGLGEALVSGLVSADCYKVREEEIVEKRI 240 +QKMVFPQASGI+FTADP+TSNRKLLSIDASFGLGEALVSGLVSADCYKV+E EIV+KRI Sbjct: 181 VQKMVFPQASGILFTADPITSNRKLLSIDASFGLGEALVSGLVSADCYKVQEAEIVDKRI 240 Query: 241 ATKKLAIYGRQEGGTETRQLDPGQQTAQTLTDGEILELARIGRQIEAYFGQPQDIEWCLA 300 ATKKLAIYGR+EGGTET+Q+DP QQ QTL D +IL+LARIGRQIEAYFG PQDIEWCL Sbjct: 241 ATKKLAIYGRKEGGTETQQIDPDQQKTQTLADEQILQLARIGRQIEAYFGSPQDIEWCLG 300 Query: 301 DGTFYIVQSRPITTLYPIPEADDQENHVYVSVGHQQMMTDPIKPLGLSFYLLMTPALMRK 360 D TFYIVQSRPITTLYPIPEA+DQENHVYVSVGHQQMMTDP+KPLGLS +LL T A M K Sbjct: 301 DDTFYIVQSRPITTLYPIPEANDQENHVYVSVGHQQMMTDPMKPLGLSLFLLTTSAPMSK 360 Query: 361 AGGRLFLDVA 370 AGGRLF+DV Sbjct: 361 AGGRLFVDVT 370 >Q65IQ7.1 Q65IQ7_BACLD Pps Length = 864 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/371 (83%), Positives = 343/371 (92%) Query: 1 MSSLVLGFQEMDKTQLWLVGGKGLHLGELSKIQGIQVPEGFCVTTAGYQKAIEQNETYHA 60 MS LVLGF EM+KTQL LVGGKGLHLGELSKIQGIQVP+GFCVTTAG+QKAI+QN+++ A Sbjct: 1 MSHLVLGFHEMEKTQLPLVGGKGLHLGELSKIQGIQVPDGFCVTTAGFQKAIKQNKSFQA 60 Query: 61 LLDQLTRLKVEDRAQIGEISRQIRQIITEAEIPSDVVKAVAQYLSLFGEKYAYAVRSSAT 120 LLDQLT LKVEDR QIGEISR+IR I E EIPS+VVK VA+YLSL G+++AYAVRSSAT Sbjct: 61 LLDQLTMLKVEDRDQIGEISRKIRHTIMEIEIPSNVVKEVARYLSLLGDEHAYAVRSSAT 120 Query: 121 AEDLPHASFAGQQDTYLNIIGKDAILQHISKCWASLFTERAVIYRMQNGFDHRQVYLSVV 180 AEDLPHASFAGQQDTYLNIIGKDAILQHISKCWASLFT+RAVIYRMQNGFDHRQVY SV+ Sbjct: 121 AEDLPHASFAGQQDTYLNIIGKDAILQHISKCWASLFTDRAVIYRMQNGFDHRQVYSSVI 180 Query: 181 IQKMVFPQASGIVFTADPMTSNRKLLSIDASFGLGEALVSGLVSADCYKVREEEIVEKRI 240 IQ+MVFPQASGI+FTADP+TSNRKLLSIDA FGLGEALVSGLVSADCYKV+ +IV+KRI Sbjct: 181 IQRMVFPQASGILFTADPITSNRKLLSIDAGFGLGEALVSGLVSADCYKVQNGQIVDKRI 240 Query: 241 ATKKLAIYGRQEGGTETRQLDPGQQTAQTLTDGEILELARIGRQIEAYFGQPQDIEWCLA 300 A KKLAIYGR++GGTET+++ P QQ Q LTDG+IL+LA IGRQIEA+FGQPQDIEWCL Sbjct: 241 AAKKLAIYGRKQGGTETKRITPDQQKTQALTDGQILQLAHIGRQIEAHFGQPQDIEWCLD 300 Query: 301 DGTFYIVQSRPITTLYPIPEADDQENHVYVSVGHQQMMTDPIKPLGLSFYLLMTPALMRK 360 TFYIVQSRPITTLYPIPEA+DQENHVY+SVGHQQMMTDPIKPLGLSFYL +TPA MRK Sbjct: 301 RDTFYIVQSRPITTLYPIPEANDQENHVYLSVGHQQMMTDPIKPLGLSFYLFITPAPMRK 360 Query: 361 AGGRLFLDVAP 371 AGGRLF+DVAP Sbjct: 361 AGGRLFVDVAP 371 >Q62U64.2 Q62U64_BACLD Phosphoenolpyruvate synthase Length = 864 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/371 (83%), Positives = 343/371 (92%) Query: 1 MSSLVLGFQEMDKTQLWLVGGKGLHLGELSKIQGIQVPEGFCVTTAGYQKAIEQNETYHA 60 MS LVLGF EM+KTQL LVGGKGLHLGELSKIQGIQVP+GFCVTTAG+QKAI+QN+++ A Sbjct: 1 MSHLVLGFHEMEKTQLPLVGGKGLHLGELSKIQGIQVPDGFCVTTAGFQKAIKQNKSFQA 60 Query: 61 LLDQLTRLKVEDRAQIGEISRQIRQIITEAEIPSDVVKAVAQYLSLFGEKYAYAVRSSAT 120 LLDQLT LKVEDR QIGEISR+IR I E EIPS+VVK VA+YLSL G+++AYAVRSSAT Sbjct: 61 LLDQLTMLKVEDRDQIGEISRKIRHTIMEIEIPSNVVKEVARYLSLLGDEHAYAVRSSAT 120 Query: 121 AEDLPHASFAGQQDTYLNIIGKDAILQHISKCWASLFTERAVIYRMQNGFDHRQVYLSVV 180 AEDLPHASFAGQQDTYLNIIGKDAILQHISKCWASLFT+RAVIYRMQNGFDHRQVY SV+ Sbjct: 121 AEDLPHASFAGQQDTYLNIIGKDAILQHISKCWASLFTDRAVIYRMQNGFDHRQVYSSVI 180 Query: 181 IQKMVFPQASGIVFTADPMTSNRKLLSIDASFGLGEALVSGLVSADCYKVREEEIVEKRI 240 IQ+MVFPQASGI+FTADP+TSNRKLLSIDA FGLGEALVSGLVSADCYKV+ +IV+KRI Sbjct: 181 IQRMVFPQASGILFTADPITSNRKLLSIDAGFGLGEALVSGLVSADCYKVQNGQIVDKRI 240 Query: 241 ATKKLAIYGRQEGGTETRQLDPGQQTAQTLTDGEILELARIGRQIEAYFGQPQDIEWCLA 300 A KKLAIYGR++GGTET+++ P QQ Q LTDG+IL+LA IGRQIEA+FGQPQDIEWCL Sbjct: 241 AAKKLAIYGRKQGGTETKRITPDQQKTQALTDGQILQLAHIGRQIEAHFGQPQDIEWCLD 300 Query: 301 DGTFYIVQSRPITTLYPIPEADDQENHVYVSVGHQQMMTDPIKPLGLSFYLLMTPALMRK 360 TFYIVQSRPITTLYPIPEA+DQENHVY+SVGHQQMMTDPIKPLGLSFYL +TPA MRK Sbjct: 301 RDTFYIVQSRPITTLYPIPEANDQENHVYLSVGHQQMMTDPIKPLGLSFYLFITPAPMRK 360 Query: 361 AGGRLFLDVAP 371 AGGRLF+DVAP Sbjct: 361 AGGRLFVDVAP 371 >O34309.1 PPS_BACSU Putative phosphoenolpyruvate synthase Length = 866 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/370 (84%), Positives = 341/370 (92%) Query: 1 MSSLVLGFQEMDKTQLWLVGGKGLHLGELSKIQGIQVPEGFCVTTAGYQKAIEQNETYHA 60 MSSLVLG E++KTQL LVGGKGLHLGELSKIQGIQVPEGFCVTT GYQKAIEQNET Sbjct: 1 MSSLVLGLHEIEKTQLSLVGGKGLHLGELSKIQGIQVPEGFCVTTVGYQKAIEQNETLQV 60 Query: 61 LLDQLTRLKVEDRAQIGEISRQIRQIITEAEIPSDVVKAVAQYLSLFGEKYAYAVRSSAT 120 LLDQLT LKVEDR QIG ISR+IRQII E +IPSDVVKAVAQYLS FGE++AYAVRSSAT Sbjct: 61 LLDQLTMLKVEDRDQIGNISRKIRQIIMEVDIPSDVVKAVAQYLSQFGEEHAYAVRSSAT 120 Query: 121 AEDLPHASFAGQQDTYLNIIGKDAILQHISKCWASLFTERAVIYRMQNGFDHRQVYLSVV 180 AEDLPHASFAGQQDTYLNI G DAILQHISKCWASLFT+RAVIYRMQNGFDH QVYLSV+ Sbjct: 121 AEDLPHASFAGQQDTYLNITGVDAILQHISKCWASLFTDRAVIYRMQNGFDHSQVYLSVI 180 Query: 181 IQKMVFPQASGIVFTADPMTSNRKLLSIDASFGLGEALVSGLVSADCYKVREEEIVEKRI 240 +Q+MVFPQASGI+FTADP+TSNRK+LSIDA FGLGEALVSGLVSADC+KV++ +I++KRI Sbjct: 181 VQRMVFPQASGILFTADPITSNRKVLSIDAGFGLGEALVSGLVSADCFKVQDGQIIDKRI 240 Query: 241 ATKKLAIYGRQEGGTETRQLDPGQQTAQTLTDGEILELARIGRQIEAYFGQPQDIEWCLA 300 ATKK+AIYGR+EGGTET+Q+D QQ AQTLTD +IL+LARIGRQIEA+FGQPQDIEWCLA Sbjct: 241 ATKKMAIYGRKEGGTETQQIDSDQQKAQTLTDEQILQLARIGRQIEAHFGQPQDIEWCLA 300 Query: 301 DGTFYIVQSRPITTLYPIPEADDQENHVYVSVGHQQMMTDPIKPLGLSFYLLMTPALMRK 360 TFYIVQSRPITTL+PIPEA DQENHVY+SVGHQQMMTDPIKPLGLSF+LL T A MRK Sbjct: 301 RDTFYIVQSRPITTLFPIPEASDQENHVYISVGHQQMMTDPIKPLGLSFFLLTTVAPMRK 360 Query: 361 AGGRLFLDVA 370 AGGRLF+DV Sbjct: 361 AGGRLFVDVT 370 >B3KDE7.1 B3KDE7_9BACI Pyruvate phosphate dikinase PEP/pyruvate-binding Length = 871 Score = 634 bits (1635), Expect = e-180, Method: Compositional matrix adjust. Identities = 300/369 (81%), Positives = 336/369 (91%) Query: 1 MSSLVLGFQEMDKTQLWLVGGKGLHLGELSKIQGIQVPEGFCVTTAGYQKAIEQNETYHA 60 M SLVL FQ+M++ QL LVGGKG++LGEL+KI+GI VPEGFCVTTAGYQKAIEQNETYH Sbjct: 1 MRSLVLDFQDMEQNQLLLVGGKGMNLGELAKIEGIHVPEGFCVTTAGYQKAIEQNETYHD 60 Query: 61 LLDQLTRLKVEDRAQIGEISRQIRQIITEAEIPSDVVKAVAQYLSLFGEKYAYAVRSSAT 120 LL QL LK EDR +IGE+SR+IRQII +AEIP+DVVKAV YLS +GE++AYAVRSSAT Sbjct: 61 LLGQLAMLKAEDRERIGEVSRKIRQIIMDAEIPADVVKAVTHYLSRYGEEHAYAVRSSAT 120 Query: 121 AEDLPHASFAGQQDTYLNIIGKDAILQHISKCWASLFTERAVIYRMQNGFDHRQVYLSVV 180 AEDLPHASFAGQQDTYLNIIG +A+LQHISKCWASLFT+RAVIYRMQNGFDH QVYLSV+ Sbjct: 121 AEDLPHASFAGQQDTYLNIIGTEAVLQHISKCWASLFTDRAVIYRMQNGFDHSQVYLSVI 180 Query: 181 IQKMVFPQASGIVFTADPMTSNRKLLSIDASFGLGEALVSGLVSADCYKVREEEIVEKRI 240 +Q+MVFPQASGI+FTADPMTSNRKLLSIDASFGLGEALVSGLVSADCYKV++E IV+KRI Sbjct: 181 VQRMVFPQASGILFTADPMTSNRKLLSIDASFGLGEALVSGLVSADCYKVQDEVIVDKRI 240 Query: 241 ATKKLAIYGRQEGGTETRQLDPGQQTAQTLTDGEILELARIGRQIEAYFGQPQDIEWCLA 300 A K LAIYGR+EGGTET+ + P QQ QTLT+ +IL LARIGRQIEA+FG+PQDIEWCLA Sbjct: 241 AAKTLAIYGRREGGTETQSIAPDQQKIQTLTEQQILRLARIGRQIEAFFGRPQDIEWCLA 300 Query: 301 DGTFYIVQSRPITTLYPIPEADDQENHVYVSVGHQQMMTDPIKPLGLSFYLLMTPALMRK 360 D FYIVQSRPITTLYPIPEA DQEN VY+SVGHQQMMTDP+KPLGLSF+LL TPA MRK Sbjct: 301 DDVFYIVQSRPITTLYPIPEASDQENRVYISVGHQQMMTDPMKPLGLSFFLLTTPAPMRK 360 Query: 361 AGGRLFLDV 369 AGGRLF+DV Sbjct: 361 AGGRLFVDV 369 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,185,165,880 Number of extensions: 89146601 Number of successful extensions: 240201 Number of sequences better than 1.0e-05: 1060 Number of HSP's gapped: 237056 Number of HSP's successfully gapped: 1063 Length of query: 386 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 249 Effective length of database: 1,770,017,148 Effective search space: 440734269852 Effective search space used: 440734269852 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)