BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0562.0001.p
         (98 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

O34309.1 PPS_BACSU Putative phosphoenolpyruvate synthase              104   3e-21
Q65IQ7.1 Q65IQ7_BACLD Pps                                             102   1e-20
C2V4N5.1 C2V4N5_BACCE Pyruvate phosphate dikinase PEP/pyruvate-b...   102   1e-20
Q62U64.2 Q62U64_BACLD Phosphoenolpyruvate synthase                    102   1e-20
C3BNE4.1 C3BNE4_9BACI Pyruvate phosphate dikinase PEP/pyruvate-b...   101   3e-20

>O34309.1 PPS_BACSU Putative phosphoenolpyruvate synthase
          Length = 866

 Score =  104 bits (259), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 66/89 (74%)

Query: 1   LNTLGRSDLLIKDALMTLIERGDFVKSVPDDQPAPDTIRSNPDPLAQFHNDPAIVSDLIK 60
           L  +G+ D L+KDALMT+I+R DF+KS+P+D+ AP+  R N D  AQ  NDP IVSDLI+
Sbjct: 383 LKGMGQHDQLLKDALMTIIKRRDFIKSIPNDKTAPNPSRGNADMPAQVENDPTIVSDLIE 442

Query: 61  HSQALIGQLKQNIQTKSGPALFDFIREDL 89
            SQ  I +LKQNIQTKSG  LF FI ED+
Sbjct: 443 SSQTSIEELKQNIQTKSGSDLFRFILEDI 471


>Q65IQ7.1 Q65IQ7_BACLD Pps
          Length = 864

 Score =  102 bits (253), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 66/89 (74%), Gaps = 2/89 (2%)

Query: 1   LNTLGRSDLLIKDALMTLIERGDFVKSVPDDQPAPDTIRSNPDPLAQFHNDPAIVSDLIK 60
           LNT+G SD LIK ALMT+IER D++K  P+DQ AP   R N D LAQF NDP IVSDLIK
Sbjct: 383 LNTVG-SDPLIKGALMTVIER-DYIKLSPNDQTAPIPDRGNTDMLAQFENDPTIVSDLIK 440

Query: 61  HSQALIGQLKQNIQTKSGPALFDFIREDL 89
            S+  I +LKQNIQ KSG  LFDFI ED+
Sbjct: 441 RSETSIEELKQNIQAKSGSDLFDFILEDI 469


>C2V4N5.1 C2V4N5_BACCE Pyruvate phosphate dikinase PEP/pyruvate-binding
          Length = 868

 Score =  102 bits (253), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/91 (58%), Positives = 68/91 (74%), Gaps = 2/91 (2%)

Query: 1   LNTLGRSDLLIKDALMTLIERGDFVKSVPDDQPAPDTIRSNPDPLAQ--FHNDPAIVSDL 58
           +NTLG+SD L+KDALMT+IER DF+K +PDD+      +S P   +Q    NDPAIV+DL
Sbjct: 383 INTLGKSDPLVKDALMTVIERDDFIKLLPDDEKEKSASKSMPPASSQPQIENDPAIVTDL 442

Query: 59  IKHSQALIGQLKQNIQTKSGPALFDFIREDL 89
           IK+SQA I +LKQ+IQTKSG  + DFI ED+
Sbjct: 443 IKNSQASIEELKQSIQTKSGTYVLDFILEDI 473


>Q62U64.2 Q62U64_BACLD Phosphoenolpyruvate synthase
          Length = 864

 Score =  102 bits (253), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 66/89 (74%), Gaps = 2/89 (2%)

Query: 1   LNTLGRSDLLIKDALMTLIERGDFVKSVPDDQPAPDTIRSNPDPLAQFHNDPAIVSDLIK 60
           LNT+G SD LIK ALMT+IER D++K  P+DQ AP   R N D LAQF NDP IVSDLIK
Sbjct: 383 LNTVG-SDPLIKGALMTVIER-DYIKLSPNDQTAPIPDRGNTDMLAQFENDPTIVSDLIK 440

Query: 61  HSQALIGQLKQNIQTKSGPALFDFIREDL 89
            S+  I +LKQNIQ KSG  LFDFI ED+
Sbjct: 441 RSETSIEELKQNIQAKSGSDLFDFILEDI 469


>C3BNE4.1 C3BNE4_9BACI Pyruvate phosphate dikinase PEP/pyruvate-binding
          Length = 876

 Score =  101 bits (251), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/94 (59%), Positives = 66/94 (70%), Gaps = 5/94 (5%)

Query: 1   LNTLGRSDLLIKDALMTLIERGDFVKSVPDDQPAPDTIRSNPDP-----LAQFHNDPAIV 55
           ++TLG+SD LIKDALMT+IER DF+KS PD +  P   +SN         AQ  NDP IV
Sbjct: 388 IDTLGQSDPLIKDALMTIIEREDFIKSSPDGKKVPSPSKSNKGISSSGFQAQIENDPTIV 447

Query: 56  SDLIKHSQALIGQLKQNIQTKSGPALFDFIREDL 89
           SDLIK SQ  I +LKQNIQ+KSG  LFDFI ED+
Sbjct: 448 SDLIKSSQTSIEELKQNIQSKSGSDLFDFILEDI 481


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.139    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 553,905,089
Number of extensions: 19734569
Number of successful extensions: 50093
Number of sequences better than 1.0e-05: 98
Number of HSP's gapped: 49998
Number of HSP's successfully gapped: 98
Length of query: 98
Length of database: 3,060,696,203
Length adjustment: 67
Effective length of query: 31
Effective length of database: 2,429,488,198
Effective search space: 75314134138
Effective search space used: 75314134138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)