BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0033.p (375 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7HBR8.1 B7HBR8_BACC4 Spore germination protein GerKC 337 2e-90 C2PR88.1 C2PR88_BACCE Spore germination B3 GerAC 336 2e-90 Q63G12.1 Q63G12_BACCZ Probable spore germination protein KC 336 3e-90 Q6HNI0.1 Q6HNI0_BACHK Probable spore germination protein 335 6e-90 Q81HZ3.1 Q81HZ3_BACCR Spore germination protein KC 335 6e-90 >B7HBR8.1 B7HBR8_BACC4 Spore germination protein GerKC Length = 374 Score = 337 bits (863), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 160/356 (44%), Positives = 240/356 (67%) Query: 20 TGCWDQEYLKDLHLAYSAGFDLTEDGKIQETVELIIPPEIEQKATTSEIHTSSGHNLRSA 79 +GCWDQE L++ LAYS G+D+TE+ K+Q+T+EL+ EQ + +EIH+++GHN+R Sbjct: 19 SGCWDQEPLREARLAYSIGYDITEENKLQQTLELVKSSSGEQSSFENEIHSANGHNIRDT 78 Query: 80 SNELRNRVSGNIRFLKNGFQLLGKSVAEQGLYSNLDVNFRDPGNPTSNVRVIIAEGKASD 139 S+ L+ V+GNIR+ K G QLLG + ++G+ LDV+FRDP NPT+ V++I +G+ S+ Sbjct: 79 SDALKKNVTGNIRYFKYGVQLLGTKILKKGILPYLDVSFRDPTNPTALVKLIAVDGETSE 138 Query: 140 ILEQKTVGESKVGEFITQKIKSLEDMSVFPKETLDTVFRYLKDPGQDFALPYIAMEGNEI 199 ILE+K VG +G+F+ +K+KSLEDMSVFPKETL+T + DPG+DF LP I ++G E+ Sbjct: 139 ILEKKKVGNLLIGDFLKKKVKSLEDMSVFPKETLETASTKMLDPGKDFTLPSIKIKGKEV 198 Query: 200 ITRGVALFSDQYYSGMLNPDQSILLVLLKGQKGKNARFTKKIVLGYPDNIQEYVTINXXX 259 IT G+ALF++ +G L QS+L VLL G+ G +AR T+K+ + +Y+T+ Sbjct: 199 ITNGLALFNNDKLTGHLPLKQSVLFVLLTGKMGTSARITQKLTSDESEKTSDYLTMEISN 258 Query: 260 XXXXXXXXXXXSADKSVEVHLELKLQAIVEEFPGKRSLKENDLQKVNQAFSEILTKEAKS 319 +V H++L+L+ I E P K ++ +K+N+ S LTKEAK Sbjct: 259 RKLKRDLKITTDKKGNVYAHIKLQLKVIALEAPRDNLYKMDERKKLNKELSTQLTKEAKK 318 Query: 320 VVEEVQKANCDIFGVGRELIAYHHKVWRDKNWPKDYRKVHFHPKVDVKIIDTGIIE 375 + +++QKANCD FG+GR LIAYH +W+ KNW KDY KV F P+V+V I+ +G+++ Sbjct: 319 ITKKLQKANCDAFGIGRHLIAYHPDLWKKKNWNKDYAKVKFKPEVEVNILYSGVLK 374 >C2PR88.1 C2PR88_BACCE Spore germination B3 GerAC Length = 364 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 159/356 (44%), Positives = 241/356 (67%) Query: 20 TGCWDQEYLKDLHLAYSAGFDLTEDGKIQETVELIIPPEIEQKATTSEIHTSSGHNLRSA 79 +GCWDQE L++ LAYS G+D+T+D K+Q+T+EL+ EQ + +E+H+++G+N+R Sbjct: 9 SGCWDQEPLREARLAYSLGYDITKDNKLQQTIELVKSSSGEQSSFENEVHSATGYNVRDT 68 Query: 80 SNELRNRVSGNIRFLKNGFQLLGKSVAEQGLYSNLDVNFRDPGNPTSNVRVIIAEGKASD 139 S+ L+ V+GNIR+ K G QLLG + ++G+ LDV FRDP NPT+ V++I +G+ + Sbjct: 69 SDSLKKNVTGNIRYFKYGVQLLGTKIQKKGILPYLDVGFRDPTNPTALVKLISVDGETAK 128 Query: 140 ILEQKTVGESKVGEFITQKIKSLEDMSVFPKETLDTVFRYLKDPGQDFALPYIAMEGNEI 199 IL +K VG +G+F+ +K+KSLEDMSVFPKE+L+T + DPG+DF LP I ++G E+ Sbjct: 129 ILMKKKVGNLLIGDFLKKKVKSLEDMSVFPKESLETAATKMLDPGKDFTLPSIKLKGKEV 188 Query: 200 ITRGVALFSDQYYSGMLNPDQSILLVLLKGQKGKNARFTKKIVLGYPDNIQEYVTINXXX 259 IT G+ALF++ +G+L QS+L VLL + GK+AR T+K+ N +Y+TI Sbjct: 189 ITNGIALFNNDKLTGLLPLRQSVLFVLLTEKMGKSARITQKLTNSDSSNTSDYLTIEVSN 248 Query: 260 XXXXXXXXXXXSADKSVEVHLELKLQAIVEEFPGKRSLKENDLQKVNQAFSEILTKEAKS 319 +V H++L+L+ IV E P K + +K+N+ S+ LTKEAK Sbjct: 249 RKLKRDLKITTDKKGNVYAHIKLQLKVIVLEAPRDNIYKMEERKKLNEKLSKQLTKEAKQ 308 Query: 320 VVEEVQKANCDIFGVGRELIAYHHKVWRDKNWPKDYRKVHFHPKVDVKIIDTGIIE 375 + +++QKANCD FG+GR LIAYH ++W+ KNW KDY KV F P+V+VKI+ +G+++ Sbjct: 309 ITKKLQKANCDAFGIGRNLIAYHPELWKKKNWNKDYAKVKFKPEVEVKILYSGVLK 364 >Q63G12.1 Q63G12_BACCZ Probable spore germination protein KC Length = 374 Score = 336 bits (861), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 160/356 (44%), Positives = 240/356 (67%) Query: 20 TGCWDQEYLKDLHLAYSAGFDLTEDGKIQETVELIIPPEIEQKATTSEIHTSSGHNLRSA 79 +GCWDQE L++ LAYS G D+TE+ K+Q+T+EL+ EQ + +EIH+++GHN+R Sbjct: 19 SGCWDQEPLREARLAYSIGSDITEENKLQQTIELVKSSSGEQASFENEIHSATGHNIRDT 78 Query: 80 SNELRNRVSGNIRFLKNGFQLLGKSVAEQGLYSNLDVNFRDPGNPTSNVRVIIAEGKASD 139 S+ L+ V+GNIR+ K G QLLG + ++G+ LDV+FRDP NPT+ V++I +G+ S+ Sbjct: 79 SDALKKNVTGNIRYFKYGVQLLGTKILKKGVLPYLDVSFRDPTNPTALVKLIAVDGETSE 138 Query: 140 ILEQKTVGESKVGEFITQKIKSLEDMSVFPKETLDTVFRYLKDPGQDFALPYIAMEGNEI 199 ILE+K VG +G+F+ +K+KSLEDMSVFPKETL+T + DPG+DF LP I ++G E+ Sbjct: 139 ILEKKKVGNLLIGDFLKKKVKSLEDMSVFPKETLETAATKMLDPGKDFTLPSIKIKGKEV 198 Query: 200 ITRGVALFSDQYYSGMLNPDQSILLVLLKGQKGKNARFTKKIVLGYPDNIQEYVTINXXX 259 IT G+ALF++ +G L QS+L VLL G+ G +AR T+K+ + +Y+T+ Sbjct: 199 ITNGLALFNNDKLTGHLPLKQSVLFVLLTGKMGTSARITQKLTSDESEKTSDYLTMEVSN 258 Query: 260 XXXXXXXXXXXSADKSVEVHLELKLQAIVEEFPGKRSLKENDLQKVNQAFSEILTKEAKS 319 +V H++L+L+ I E P K ++ +K+N+ S+ LTKEAK Sbjct: 259 RKLKRDLKITTDKKGNVYAHIKLQLKVIALEAPRDNLYKMDERKKLNKELSKQLTKEAKK 318 Query: 320 VVEEVQKANCDIFGVGRELIAYHHKVWRDKNWPKDYRKVHFHPKVDVKIIDTGIIE 375 + +++QKANCD FG+GR LIAYH +W+ KNW KDY KV F P+V+V I+ +G+++ Sbjct: 319 ITKKLQKANCDAFGIGRHLIAYHPDLWKKKNWNKDYAKVKFKPEVEVNILYSGVLK 374 >Q6HNI0.1 Q6HNI0_BACHK Probable spore germination protein Length = 374 Score = 335 bits (858), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 160/356 (44%), Positives = 238/356 (66%) Query: 20 TGCWDQEYLKDLHLAYSAGFDLTEDGKIQETVELIIPPEIEQKATTSEIHTSSGHNLRSA 79 +GCWDQE L++ LAYS G D+TE+ K+Q+T+EL+ EQ + +EIH+++GHN+R Sbjct: 19 SGCWDQEPLREARLAYSIGSDITEENKLQQTIELVKSSSGEQASFENEIHSATGHNIRDT 78 Query: 80 SNELRNRVSGNIRFLKNGFQLLGKSVAEQGLYSNLDVNFRDPGNPTSNVRVIIAEGKASD 139 S+ L+ V+GNIR+ K G QLLG + ++G+ LDV+FRDP NPT+ V++I +G+ S+ Sbjct: 79 SDALKKNVTGNIRYFKYGVQLLGTKILKKGVLPYLDVSFRDPTNPTALVKLIAVDGETSE 138 Query: 140 ILEQKTVGESKVGEFITQKIKSLEDMSVFPKETLDTVFRYLKDPGQDFALPYIAMEGNEI 199 ILE+K VG +G+F+ +K+KSLEDMSVFPKETL+T + DPG+DF LP I ++G E+ Sbjct: 139 ILEKKKVGNLLIGDFLKKKVKSLEDMSVFPKETLETAATKMLDPGKDFTLPSIKIKGKEV 198 Query: 200 ITRGVALFSDQYYSGMLNPDQSILLVLLKGQKGKNARFTKKIVLGYPDNIQEYVTINXXX 259 IT G+ALF++ +G L QS+L VLL G+ G +AR T+K+ + +Y+T+ Sbjct: 199 ITNGLALFNNDKLTGHLPLKQSVLFVLLTGKMGTSARITQKLTSDESEKTSDYLTMEVSN 258 Query: 260 XXXXXXXXXXXSADKSVEVHLELKLQAIVEEFPGKRSLKENDLQKVNQAFSEILTKEAKS 319 +V H++L+L+ I E P K ++ +K+N+ S+ LTKEAK Sbjct: 259 RKLKQDLKITTDKKGNVYAHIKLQLKVIALEAPRDNLYKMDERKKLNKELSKQLTKEAKK 318 Query: 320 VVEEVQKANCDIFGVGRELIAYHHKVWRDKNWPKDYRKVHFHPKVDVKIIDTGIIE 375 + ++QKANCD FG+GR LIAYH +W+ K W KDY KV F P+VDV I+ +G+++ Sbjct: 319 ITNKLQKANCDAFGIGRHLIAYHPDLWKKKKWNKDYAKVKFKPEVDVNILYSGVLK 374 >Q81HZ3.1 Q81HZ3_BACCR Spore germination protein KC Length = 374 Score = 335 bits (858), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 159/356 (44%), Positives = 240/356 (67%) Query: 20 TGCWDQEYLKDLHLAYSAGFDLTEDGKIQETVELIIPPEIEQKATTSEIHTSSGHNLRSA 79 +GCWDQE L++ LAYS G D+TE+ ++Q+T+EL+ EQ + +EIH+++GHN+R Sbjct: 19 SGCWDQEPLREARLAYSIGSDITEENQLQQTIELVKSSSGEQSSFENEIHSATGHNIRDT 78 Query: 80 SNELRNRVSGNIRFLKNGFQLLGKSVAEQGLYSNLDVNFRDPGNPTSNVRVIIAEGKASD 139 S+ L+ V+GNIR+ K G QLLG + ++G+ LDV+FRDP NPT+ V++I +G+ S+ Sbjct: 79 SDALKKNVTGNIRYFKYGVQLLGTKILKKGILPYLDVSFRDPTNPTALVKLIAVDGETSE 138 Query: 140 ILEQKTVGESKVGEFITQKIKSLEDMSVFPKETLDTVFRYLKDPGQDFALPYIAMEGNEI 199 ILE+K VG +G+F+ +K+KSLEDMSVFPKETL+T + DPG+DF LP I ++G E+ Sbjct: 139 ILEKKKVGNLLIGDFLKKKVKSLEDMSVFPKETLETAATKMLDPGKDFTLPSIKIKGKEV 198 Query: 200 ITRGVALFSDQYYSGMLNPDQSILLVLLKGQKGKNARFTKKIVLGYPDNIQEYVTINXXX 259 IT G+ALF++ +G L QS+L VLL G+ G +AR T+K+ + +Y+T+ Sbjct: 199 ITNGLALFNNDKLTGHLPLKQSVLFVLLTGKMGTSARITQKLTSDESEKTSDYLTMEISN 258 Query: 260 XXXXXXXXXXXSADKSVEVHLELKLQAIVEEFPGKRSLKENDLQKVNQAFSEILTKEAKS 319 +V H++L+L+ I E P K ++ +K+N+ S+ LTKEAK Sbjct: 259 RKLKRDLKITTDKKGNVYAHIKLQLKVIALEAPRDNLYKMDERKKLNKELSKQLTKEAKK 318 Query: 320 VVEEVQKANCDIFGVGRELIAYHHKVWRDKNWPKDYRKVHFHPKVDVKIIDTGIIE 375 + +++QKANCD FG+GR LIAYH +W+ KNW KDY KV F P+V+V I+ +G+++ Sbjct: 319 ITKKLQKANCDAFGIGRHLIAYHPDLWKKKNWNKDYAKVKFKPEVEVNILYSGVLK 374 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,989,347,337 Number of extensions: 77304958 Number of successful extensions: 213000 Number of sequences better than 1.0e-05: 443 Number of HSP's gapped: 212508 Number of HSP's successfully gapped: 443 Length of query: 375 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 238 Effective length of database: 1,770,017,148 Effective search space: 421264081224 Effective search space used: 421264081224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)