BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0032.p (266 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEW1.1 B3KEW1_9BACI ABC-2 type transporter 288 5e-76 B1DAH7.1 B1DAH7_9BACL ABC-2 type transporter 259 2e-67 B2A6Q1.1 B2A6Q1_NATTJ ABC-2 type transporter 217 7e-55 C0UVH2.1 C0UVH2_9BACT ABC-2 type transporter 133 1e-29 Q08QA0.1 Q08QA0_STIAU ATP-binding protein involved in mithramyci... 103 2e-20 >B3KEW1.1 B3KEW1_9BACI ABC-2 type transporter Length = 276 Score = 288 bits (736), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 142/256 (55%), Positives = 198/256 (77%) Query: 10 LQPLRKRGRWERWWTEISILFRIQFAIVRDSWAWVILMATLYPLTTLLFMRFYTVNPTDE 69 LQ ++ +R TE IL RIQF I+R++W W+ +MA ++PLTTLLF++F+TV+PT Sbjct: 21 LQGHEQQSIIQRRITEWLILARIQFTIIREAWVWIFIMACMFPLTTLLFLKFFTVDPTPA 80 Query: 70 MVVQIIAGNLVFGIIVMGMNGLGQEIALQKHQDHFTFYASLPISKNNFVLANMLRGLMNT 129 ++ +II GN++FG+IVMG+N + QEI+ QKHQ HFT+Y+SLPI+K NF+ AN+LRGL+ Sbjct: 81 VMTRIITGNMLFGLIVMGLNSMAQEISWQKHQGHFTYYSSLPIAKVNFIFANLLRGLIMC 140 Query: 130 LPSFLILGSLGQWMYGVQLHYSPGLPVVIILSLTSVVGIGILLGFWSPTFQFTNMLCQAL 189 +PSF+IL +GQ YG+Q HYS GL V++L++ SVVG G+L+GFWSP+ Q TNML QAL Sbjct: 141 VPSFIILAMIGQLAYGIQFHYSWGLVPVLLLTVFSVVGAGVLIGFWSPSHQLTNMLVQAL 200 Query: 190 MMIISFLSPVMVSIDQLPVPLQWISYVLPTTYAADAMRSILTVGWSKGVMLDCAVMLVFS 249 MM ISFL+PVMV +DQLP+ LQW+SY+ PTTYAA+AMR +L GWS V + V+L FS Sbjct: 201 MMFISFLTPVMVDMDQLPMILQWLSYIFPTTYAAEAMREVLISGWSGSVAWNTLVLLFFS 260 Query: 250 MISLIVVNRLVSWRVN 265 ++S++++ + V WRV Sbjct: 261 LLSIVLILKKVDWRVE 276 >B1DAH7.1 B1DAH7_9BACL ABC-2 type transporter Length = 256 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 124/243 (51%), Positives = 176/243 (72%) Query: 21 RWWTEISILFRIQFAIVRDSWAWVILMATLYPLTTLLFMRFYTVNPTDEMVVQIIAGNLV 80 R WTE+ IL RIQ AIVR+ W W+ +MAT++PLTTLLFM+F + +++V +I GN+V Sbjct: 11 RMWTELYILLRIQVAIVREQWIWIFIMATIFPLTTLLFMKFMYGISSGQIMVNVIVGNIV 70 Query: 81 FGIIVMGMNGLGQEIALQKHQDHFTFYASLPISKNNFVLANMLRGLMNTLPSFLILGSLG 140 F II+MG N LGQEI+ QKH +FTFY+SLPISK FV+ ++RGLM +PS +I+ +G Sbjct: 71 FAIIMMGFNALGQEISWQKHAGYFTFYSSLPISKAVFVVTQLVRGLMTAMPSVIIMAFIG 130 Query: 141 QWMYGVQLHYSPGLPVVIILSLTSVVGIGILLGFWSPTFQFTNMLCQALMMIISFLSPVM 200 Q+ YG++LHY GL + +L++ S+VGIG +GFWSP Q TNML Q LMM + FLSPVM Sbjct: 131 QFAYGIRLHYEWGLIPIFLLAVLSMVGIGAGIGFWSPDHQMTNMLVQGLMMFVGFLSPVM 190 Query: 201 VSIDQLPVPLQWISYVLPTTYAADAMRSILTVGWSKGVMLDCAVMLVFSMISLIVVNRLV 260 + QLP L++I + PTTY+A A+R +LT GW+ V +D V++ F ++S ++R++ Sbjct: 191 MEASQLPPVLRYIGVIFPTTYSASALREMLTKGWTHEVTVDMFVLIGFIIVSFAFISRMI 250 Query: 261 SWR 263 +WR Sbjct: 251 NWR 253 >B2A6Q1.1 B2A6Q1_NATTJ ABC-2 type transporter Length = 222 Score = 217 bits (553), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 109/220 (49%), Positives = 155/220 (70%) Query: 47 MATLYPLTTLLFMRFYTVNPTDEMVVQIIAGNLVFGIIVMGMNGLGQEIALQKHQDHFTF 106 +A+L+PLTTL+F+ F+T NP+ + II GN++F +++ G+N + Q I+ QKHQ HFTF Sbjct: 3 LASLFPLTTLMFLNFFTDNPSSGQMAHIITGNMMFALVITGLNVVAQNISQQKHQGHFTF 62 Query: 107 YASLPISKNNFVLANMLRGLMNTLPSFLILGSLGQWMYGVQLHYSPGLPVVIILSLTSVV 166 YASLPISK NF+LAN+ RG M +LPSF IL +G+ +Y V + + L L + SVV Sbjct: 63 YASLPISKINFILANLARGAMTSLPSFCILFVIGRLVYDVDFYMTWALFPATFLIIMSVV 122 Query: 167 GIGILLGFWSPTFQFTNMLCQALMMIISFLSPVMVSIDQLPVPLQWISYVLPTTYAADAM 226 GIG +GFWSP Q T+ML QALMM+ISFL+PVMV I+ LP LQ IS +LPTTYAA+ + Sbjct: 123 GIGAYIGFWSPNQQLTSMLVQALMMLISFLTPVMVRIEDLPSLLQLISRLLPTTYAAETL 182 Query: 227 RSILTVGWSKGVMLDCAVMLVFSMISLIVVNRLVSWRVNK 266 R +L G ++ V+ + A++LVF+ I++ + WR+ + Sbjct: 183 RILLISGLTQEVLFNAAILLVFTCCFYILILNNLDWRIEE 222 >C0UVH2.1 C0UVH2_9BACT ABC-2 type transporter Length = 247 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 137/249 (55%), Gaps = 6/249 (2%) Query: 20 ERWWTEISILFRIQFAIVRDSWAWVILMATLYPLTTLLFMRFYTVNPTDEMVVQIIAGNL 79 R+W E+ LF IQ R A I T++PL + + T E + II G+ Sbjct: 2 RRFWLEVRYLFTIQILEERGWLAGTIFFTTVFPLLLVFGLGLIGSGQTKEGLTYIITGST 61 Query: 80 VFGIIVMGMNGLGQEIALQKHQDHFTFYASLPISKNNFVLANMLRGLMNTLPSFLILGSL 139 + + +G+ +GQ + K + F +YASLPISK++ ++A M L+ LP + Sbjct: 62 ISSLTFVGITMVGQSLGWMKDRGDFLYYASLPISKSSLIVAVMASKLVLQLPGIIAALVG 121 Query: 140 GQWMYGVQLHYSPGLPVVIILSLTSVV--GIGILLGFWSPTFQFTNMLCQALMMIISFLS 197 G MY LH+ P V+IIL LT++ G+G +G SP++Q N+ Q + + F + Sbjct: 122 GTLMY--DLHFKPNPVVIIILPLTALALSGLGAAIGLLSPSYQLVNIFSQVAGITVMFAA 179 Query: 198 PVMVSIDQLPVPLQWISYVLPTTYAADAM-RSILTVGWSKGVMLDCAVMLVFSMISLIVV 256 PVM+ + LP LQW ++LP +YAADA+ R++L + ++ +M+D V+ +++S+I V Sbjct: 180 PVMIPWESLPRVLQWFGWLLPPSYAADALRRAVLGINDTR-LMMDLLVLTTCALVSIIGV 238 Query: 257 NRLVSWRVN 265 R + WR+ Sbjct: 239 TRGLRWRLR 247 >Q08QA0.1 Q08QA0_STIAU ATP-binding protein involved in mithramycin resistance Length = 611 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 120/230 (52%), Gaps = 1/230 (0%) Query: 37 VRDSWAWVILMATLYPLTTLLFMRFYTVNPTDEM-VVQIIAGNLVFGIIVMGMNGLGQEI 95 VR +WAW + + P+ + + + +D ++ I++G VF + G+ Q + Sbjct: 382 VRHTWAWNAVFSLFMPVAMVFGLSRIGLGLSDRTSLLYIVSGAAVFSVATEGILTCAQRV 441 Query: 96 ALQKHQDHFTFYASLPISKNNFVLANMLRGLMNTLPSFLILGSLGQWMYGVQLHYSPGLP 155 A+ + +YASLPI + +FV + +L + P + G ++G++L SP L Sbjct: 442 AMMRKDGRLIYYASLPIGQASFVASIILSRVFIVFPGVVTPLLAGWLLHGIRLELSPWLL 501 Query: 156 VVIILSLTSVVGIGILLGFWSPTFQFTNMLCQALMMIISFLSPVMVSIDQLPVPLQWISY 215 VVI L+ S G+G++LG ++ AL+ ++ +PV + + LP PL+ + + Sbjct: 502 VVIPLTALSFSGVGMMLGSLIRDLDLLVVITNALISVLLLAAPVFIPEEALPSPLRAMGF 561 Query: 216 VLPTTYAADAMRSILTVGWSKGVMLDCAVMLVFSMISLIVVNRLVSWRVN 265 +LP TYAADA+R L +D AV+ +++S + ++R + WRV+ Sbjct: 562 LLPPTYAADALRRALDGAVDVRFAVDLAVLAAMTLVSFVGLSRWMRWRVD 611 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.141 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,561,181,655 Number of extensions: 62558661 Number of successful extensions: 241534 Number of sequences better than 1.0e-05: 70 Number of HSP's gapped: 241897 Number of HSP's successfully gapped: 70 Length of query: 266 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 133 Effective length of database: 1,807,701,208 Effective search space: 240424260664 Effective search space used: 240424260664 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)