BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0560.0030.p
         (354 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1KVU7.1 B1KVU7_CLOBM Putative uncharacterized protein                 65   7e-09
C3L1F7.1 C3L1F7_CLOB6 Putative uncharacterized protein                 64   2e-08
B1QLH5.1 B1QLH5_CLOBO Putative uncharacterized protein                 64   2e-08
B1Q677.1 B1Q677_CLOBO Putative uncharacterized protein                 62   7e-08
B1IDN4.1 B1IDN4_CLOBK Putative uncharacterized protein                 62   7e-08

>B1KVU7.1 B1KVU7_CLOBM Putative uncharacterized protein
          Length = 343

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 52/80 (65%)

Query: 274 LKVISDKRRLEIIGLLKQSNRYAGELAQLLMLTPAAINYHTNLLIDLNLIRITRTDSRIY 333
           LK +SDK +LEII LLK   +Y+ E+A+ L LTPA ++YH   L++ +++ + +   ++Y
Sbjct: 264 LKALSDKSKLEIISLLKAGPKYSLEIAEALKLTPATVSYHMGALLECSMVAVEKKQGKVY 323

Query: 334 YVLDTERLAALMDQTKSLLL 353
           Y L+   L  L+D+  + LL
Sbjct: 324 YHLNKAGLKNLIDELNNTLL 343


>C3L1F7.1 C3L1F7_CLOB6 Putative uncharacterized protein
          Length = 343

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 51/80 (63%)

Query: 274 LKVISDKRRLEIIGLLKQSNRYAGELAQLLMLTPAAINYHTNLLIDLNLIRITRTDSRIY 333
           LK +SDK +LEII LLK   +Y+ E+A+ L LTPA ++YH   L++ +++ + +   +IY
Sbjct: 264 LKALSDKSKLEIISLLKAGPKYSLEIAEALKLTPATVSYHMGSLLECSMVVVEKKQGKIY 323

Query: 334 YVLDTERLAALMDQTKSLLL 353
           Y L+   L   +D+  + LL
Sbjct: 324 YHLNKTGLKNFIDELNNTLL 343


>B1QLH5.1 B1QLH5_CLOBO Putative uncharacterized protein
          Length = 343

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 51/80 (63%)

Query: 274 LKVISDKRRLEIIGLLKQSNRYAGELAQLLMLTPAAINYHTNLLIDLNLIRITRTDSRIY 333
           LK +SDK +LEII LLK   +Y+ E+A+ L LTPA ++YH   L++ +++ + +   +IY
Sbjct: 264 LKALSDKSKLEIISLLKAGPKYSLEIAEALKLTPATVSYHMGSLLECSMVVVEKKQGKIY 323

Query: 334 YVLDTERLAALMDQTKSLLL 353
           Y L+   L   +D+  + LL
Sbjct: 324 YHLNKTGLKNFIDELNNTLL 343


>B1Q677.1 B1Q677_CLOBO Putative uncharacterized protein
          Length = 343

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 51/80 (63%)

Query: 274 LKVISDKRRLEIIGLLKQSNRYAGELAQLLMLTPAAINYHTNLLIDLNLIRITRTDSRIY 333
           LK +SDK +LEII LLK   +Y+ E+A+ L LTPA ++YH   L++ +++ + +   ++Y
Sbjct: 264 LKALSDKSKLEIISLLKAGPKYSLEIAEALKLTPATVSYHMGSLLECSMVVVEKKQGKVY 323

Query: 334 YVLDTERLAALMDQTKSLLL 353
           Y L+   L   +D+  + LL
Sbjct: 324 YHLNKIGLKNFIDELNNTLL 343


>B1IDN4.1 B1IDN4_CLOBK Putative uncharacterized protein
          Length = 343

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 51/80 (63%)

Query: 274 LKVISDKRRLEIIGLLKQSNRYAGELAQLLMLTPAAINYHTNLLIDLNLIRITRTDSRIY 333
           LK +SDK +LEII LLK   +Y+ E+A+ L LTPA ++YH   L++ +++ + +   ++Y
Sbjct: 264 LKALSDKSKLEIISLLKAGPKYSLEIAEALKLTPATVSYHMGSLLECSMVVVEKKQGKVY 323

Query: 334 YVLDTERLAALMDQTKSLLL 353
           Y L+   L   +D+  + LL
Sbjct: 324 YHLNKIGLKNFIDELNNTLL 343


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,886,052,636
Number of extensions: 71603355
Number of successful extensions: 187450
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 187489
Number of HSP's successfully gapped: 15
Length of query: 354
Length of database: 3,060,696,203
Length adjustment: 137
Effective length of query: 217
Effective length of database: 1,770,017,148
Effective search space: 384093721116
Effective search space used: 384093721116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)