BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0029.p (364 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1X962.1 B1X962_ECODH UDP-D-galactose:(Glucosyl)lipopolysacchari... 215 7e-54 C4ZXM0.1 C4ZXM0_ECOLI UDP-D-galactose:(Glucosyl)lipopolysacchari... 215 7e-54 P27127.1 RFAB_ECOLI Lipopolysaccharide 1,6-galactosyltransferase... 215 7e-54 B7ULI3.1 B7ULI3_ECO27 UDP-D-galactose: (Glucosyl) lipopolysaccha... 211 1e-52 B1EIG2.1 B1EIG2_9ESCH Lipopolysaccharide 1,6-galactosyltransfera... 209 5e-52 >B1X962.1 B1X962_ECODH UDP-D-galactose:(Glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase Length = 369 Score = 215 bits (547), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 129/367 (35%), Positives = 203/367 (55%), Gaps = 24/367 (6%) Query: 7 SMRISIVCRELSGRGGMETVFKNVITHLMQKGDEVELIIF--GGSHDKKWLESVPHHI-I 63 SM+I+ + +SG GGMETV ++VIT Q+ + E+ F DK WLE + + Sbjct: 10 SMKIAFIGEAVSGFGGMETVIRDVITTFRQQHIQSEMFFFCRNDKMDKGWLEGIKYSCSF 69 Query: 64 EMPRSNLIKIYYNSLVVYSRLLRNFNPEVILVTDPYFIYQTKLVTSRMKRKPAIG----S 119 R ++ + S+ L+ + P++++ D + L ++ ++K I S Sbjct: 70 SNIRLGFLR-RAKHIHALSKWLQEYQPDIVICIDVI----SCLFAAKARKKSGIDMPVFS 124 Query: 120 WVHFELSALIKVQQLASAHFHLAISKGIGRQIEKVNGGRSDN-VHIIYNPVAISEMTVPR 178 W HF L + + A +HLAIS GI +Q+ +N G +++ +++I+NPV + +P Sbjct: 125 WPHFSLDHKKHAEYITCADYHLAISSGIKQQM--INRGVAESTINVIFNPVETKDSVIPA 182 Query: 179 PD---IATFLYVGRLEDE-YKKISDFLKALSQLKGEFKTIMIGDGPDHEPLVALSRQLGI 234 P+ ATF+YVGR++ E K++ D L LSQ KG +K ++GDG D E A R+L I Sbjct: 183 PEEGETATFIYVGRMKFEGQKRVKDLLDGLSQAKGNWKLHVLGDGSDFEKCQAYGRELNI 242 Query: 235 NDRVEWRGWQYNPWD----QLPPVSCLVLTSRLEGFGLVLVEAMSKGIPCISTDCPSGPS 290 +DR+ W GWQ PW+ + VS L+LTS EGF + L+EA+S GIPCIS DC SGP+ Sbjct: 243 DDRIVWYGWQQYPWELVQQDIEKVSALLLTSSFEGFPMTLLEALSWGIPCISADCVSGPA 302 Query: 291 EIIRGGENGWLVPPGDVGAISSMLQNVIDQPEILPSQEAVRESVKHFDTSLLMNKLRDVL 350 +II+ NG L PGD+ ++L I EI E + S+ F S ++L V+ Sbjct: 303 DIIQPDVNGHLYQPGDIAGFVTLLNKYI-AGEIHIEHEKIPASIDEFYQSKYYDRLHKVI 361 Query: 351 QAEINKK 357 + I+++ Sbjct: 362 ISAISRR 368 >C4ZXM0.1 C4ZXM0_ECOLI UDP-D-galactose:(Glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase Length = 369 Score = 215 bits (547), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 129/367 (35%), Positives = 203/367 (55%), Gaps = 24/367 (6%) Query: 7 SMRISIVCRELSGRGGMETVFKNVITHLMQKGDEVELIIF--GGSHDKKWLESVPHHI-I 63 SM+I+ + +SG GGMETV ++VIT Q+ + E+ F DK WLE + + Sbjct: 10 SMKIAFIGEAVSGFGGMETVIRDVITTFRQQHIQSEMFFFCRNDKMDKGWLEGIKYSCSF 69 Query: 64 EMPRSNLIKIYYNSLVVYSRLLRNFNPEVILVTDPYFIYQTKLVTSRMKRKPAIG----S 119 R ++ + S+ L+ + P++++ D + L ++ ++K I S Sbjct: 70 SNIRLGFLR-RAKHIHALSKWLQEYQPDIVICIDVI----SCLFAAKARKKSGIDMPVFS 124 Query: 120 WVHFELSALIKVQQLASAHFHLAISKGIGRQIEKVNGGRSDN-VHIIYNPVAISEMTVPR 178 W HF L + + A +HLAIS GI +Q+ +N G +++ +++I+NPV + +P Sbjct: 125 WPHFSLDHKKHAEYITCADYHLAISSGIKQQM--INRGVAESTINVIFNPVETKDSVIPA 182 Query: 179 PD---IATFLYVGRLEDE-YKKISDFLKALSQLKGEFKTIMIGDGPDHEPLVALSRQLGI 234 P+ ATF+YVGR++ E K++ D L LSQ KG +K ++GDG D E A R+L I Sbjct: 183 PEEGETATFIYVGRMKFEGQKRVKDLLDGLSQAKGNWKLHVLGDGSDFEKCQAYGRELNI 242 Query: 235 NDRVEWRGWQYNPWD----QLPPVSCLVLTSRLEGFGLVLVEAMSKGIPCISTDCPSGPS 290 +DR+ W GWQ PW+ + VS L+LTS EGF + L+EA+S GIPCIS DC SGP+ Sbjct: 243 DDRIVWYGWQQYPWELVQQDIEKVSALLLTSSFEGFPMTLLEALSWGIPCISADCVSGPA 302 Query: 291 EIIRGGENGWLVPPGDVGAISSMLQNVIDQPEILPSQEAVRESVKHFDTSLLMNKLRDVL 350 +II+ NG L PGD+ ++L I EI E + S+ F S ++L V+ Sbjct: 303 DIIQPDVNGHLYQPGDIAGFVTLLNKYI-AGEIHIEHEKIPASIDEFYQSKYYDRLHKVI 361 Query: 351 QAEINKK 357 + I+++ Sbjct: 362 ISAISRR 368 >P27127.1 RFAB_ECOLI Lipopolysaccharide 1,6-galactosyltransferase EC=2.4.1.- Length = 369 Score = 215 bits (547), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 129/367 (35%), Positives = 203/367 (55%), Gaps = 24/367 (6%) Query: 7 SMRISIVCRELSGRGGMETVFKNVITHLMQKGDEVELIIF--GGSHDKKWLESVPHHI-I 63 SM+I+ + +SG GGMETV ++VIT Q+ + E+ F DK WLE + + Sbjct: 10 SMKIAFIGEAVSGFGGMETVIRDVITTFRQQHIQSEMFFFCRNDKMDKGWLEGIKYSCSF 69 Query: 64 EMPRSNLIKIYYNSLVVYSRLLRNFNPEVILVTDPYFIYQTKLVTSRMKRKPAIG----S 119 R ++ + S+ L+ + P++++ D + L ++ ++K I S Sbjct: 70 SNIRLGFLR-RAKHIHALSKWLQEYQPDIVICIDVI----SCLFAAKARKKSGIDMPVFS 124 Query: 120 WVHFELSALIKVQQLASAHFHLAISKGIGRQIEKVNGGRSDN-VHIIYNPVAISEMTVPR 178 W HF L + + A +HLAIS GI +Q+ +N G +++ +++I+NPV + +P Sbjct: 125 WPHFSLDHKKHAEYITCADYHLAISSGIKQQM--INRGVAESTINVIFNPVETKDSVIPA 182 Query: 179 PD---IATFLYVGRLEDE-YKKISDFLKALSQLKGEFKTIMIGDGPDHEPLVALSRQLGI 234 P+ ATF+YVGR++ E K++ D L LSQ KG +K ++GDG D E A R+L I Sbjct: 183 PEEGETATFIYVGRMKFEGQKRVKDLLDGLSQAKGNWKLHVLGDGSDFEKCQAYGRELNI 242 Query: 235 NDRVEWRGWQYNPWD----QLPPVSCLVLTSRLEGFGLVLVEAMSKGIPCISTDCPSGPS 290 +DR+ W GWQ PW+ + VS L+LTS EGF + L+EA+S GIPCIS DC SGP+ Sbjct: 243 DDRIVWYGWQQYPWELVQQDIEKVSALLLTSSFEGFPMTLLEALSWGIPCISADCVSGPA 302 Query: 291 EIIRGGENGWLVPPGDVGAISSMLQNVIDQPEILPSQEAVRESVKHFDTSLLMNKLRDVL 350 +II+ NG L PGD+ ++L I EI E + S+ F S ++L V+ Sbjct: 303 DIIQPDVNGHLYQPGDIAGFVTLLNKYI-AGEIHIEHEKIPASIDEFYQSKYYDRLHKVI 361 Query: 351 QAEINKK 357 + I+++ Sbjct: 362 ISAISRR 368 >B7ULI3.1 B7ULI3_ECO27 UDP-D-galactose: (Glucosyl) lipopolysaccharide-alpha-1,3-D-galactosyltransferase Length = 369 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 127/367 (34%), Positives = 204/367 (55%), Gaps = 24/367 (6%) Query: 7 SMRISIVCRELSGRGGMETVFKNVITHLMQKGDEVELIIF--GGSHDKKWLESVPHHI-I 63 SM+I+ + +SG GGMETV ++VIT Q+ E+ F DK WLE + + Sbjct: 10 SMKIAFIGEAVSGFGGMETVIRDVITTFRQQHIYSEMFFFCRNDKMDKGWLEGIKYSCSF 69 Query: 64 EMPRSNLIKIYYNSLVVYSRLLRNFNPEVILVTDPYFIYQTKLVTSRMKRKPAIG----S 119 R ++ + S+ L+++ P+V++ D + L ++ ++K I S Sbjct: 70 SNIRLGFLR-RAKHIHALSKWLQDYQPDVVICIDVI----SCLYAAKARKKSGIDVPVFS 124 Query: 120 WVHFELSALIKVQQLASAHFHLAISKGIGRQIEKVNGGRSDN-VHIIYNPVAISEMTVPR 178 W HF L + + A +HLAIS GI +Q+ +N G ++ +++I+NPV + +P Sbjct: 125 WPHFSLDHKKHAEYITCADYHLAISSGIKQQM--INRGVPESTINVIFNPVEAKDTVIPG 182 Query: 179 PD---IATFLYVGRLEDE-YKKISDFLKALSQLKGEFKTIMIGDGPDHEPLVALSRQLGI 234 P+ ATF+YVGR++ E K++ D L LSQ +G++K ++GDG D E A R+L I Sbjct: 183 PEEGETATFIYVGRMKFEGQKRVKDLLDGLSQAQGDWKLHVLGDGSDFEKCQAYGRELKI 242 Query: 235 NDRVEWRGWQYNPWD----QLPPVSCLVLTSRLEGFGLVLVEAMSKGIPCISTDCPSGPS 290 ++R+ W GWQ +PW+ + VS L+LTS EGF + L+E+MS GIPCIS DC SGP Sbjct: 243 DNRIVWHGWQKHPWEVVRQDIKKVSALLLTSSFEGFPMTLLESMSWGIPCISADCVSGPG 302 Query: 291 EIIRGGENGWLVPPGDVGAISSMLQNVIDQPEILPSQEAVRESVKHFDTSLLMNKLRDVL 350 +II+ NG L PGD+ ++L I EI E + S+ F S ++L +++ Sbjct: 303 DIIQPDVNGHLYQPGDIAGFVTLLNKYI-AGEIHIEHEKIPASIDKFYQSKYYDRLHNII 361 Query: 351 QAEINKK 357 + I+++ Sbjct: 362 ISAISRR 368 >B1EIG2.1 B1EIG2_9ESCH Lipopolysaccharide 1,6-galactosyltransferase EC=2.4.1.- Length = 359 Score = 209 bits (531), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 125/366 (34%), Positives = 205/366 (56%), Gaps = 24/366 (6%) Query: 8 MRISIVCRELSGRGGMETVFKNVITHLMQKGDEVELIIF--GGSHDKKWLESVPHHI-IE 64 M+I+ + +SG GGMETV ++VIT Q+ + E+ F +K+WLE + + Sbjct: 1 MKIAFIGEAVSGFGGMETVIRDVITTFRQQHIQSEMFFFCRNDKMNKEWLEEIKYSCSFS 60 Query: 65 MPRSNLIKIYYNSLVVYSRLLRNFNPEVILVTDPYFIYQTKLVTSRMKRKPAIG----SW 120 R ++ + S+ L+++ P+V++ D + L ++ ++K I SW Sbjct: 61 NIRLGFLR-RAKHIHALSKWLQDYQPDVVICIDVI----SCLYAAKARKKSGINVPVFSW 115 Query: 121 VHFELSALIKVQQLASAHFHLAISKGIGRQIEKVNGGRSDN-VHIIYNPVAISEMTVPRP 179 HF L + + A +HLAIS GI +Q+ +N G ++ +++I+NPV + +P P Sbjct: 116 PHFSLDHKKHAEYITCADYHLAISTGIKQQM--INRGVPESTINVIFNPVETKDSIIPAP 173 Query: 180 ---DIATFLYVGRLEDE-YKKISDFLKALSQLKGEFKTIMIGDGPDHEPLVALSRQLGIN 235 + ATF+YVGR++ E K+I D L LSQ +G++K ++GDG D E A R+L I+ Sbjct: 174 AEGETATFIYVGRMKFEGQKRIKDLLDGLSQAQGDWKLHVLGDGSDFEKCQAYGRELNID 233 Query: 236 DRVEWRGWQYNPWD----QLPPVSCLVLTSRLEGFGLVLVEAMSKGIPCISTDCPSGPSE 291 DR+ W GWQ PW+ + VS L+LTS EGF + L+EAMS GIPCIS DC SGP + Sbjct: 234 DRIIWHGWQKQPWEVVRQDIKKVSALLLTSSFEGFPMTLLEAMSWGIPCISADCVSGPGD 293 Query: 292 IIRGGENGWLVPPGDVGAISSMLQNVIDQPEILPSQEAVRESVKHFDTSLLMNKLRDVLQ 351 +I+ G NG L PG++ ++L I EI + + S+ F + ++L+ ++ Sbjct: 294 MIQPGVNGHLYQPGELTGFINLLDKYI-SGEISLAHNVIPASIGKFYQPIYYDRLQKIIV 352 Query: 352 AEINKK 357 + I+++ Sbjct: 353 SAISRR 358 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,218,953,257 Number of extensions: 93400382 Number of successful extensions: 267961 Number of sequences better than 1.0e-05: 2379 Number of HSP's gapped: 268601 Number of HSP's successfully gapped: 2381 Length of query: 364 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 227 Effective length of database: 1,770,017,148 Effective search space: 401793892596 Effective search space used: 401793892596 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)