BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0028.p (417 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I974.1 B8I974_CLOCE Glycosyltransferase, MGT family 328 6e-88 B8I5C7.1 B8I5C7_CLOCE Glycosyltransferase, MGT family 261 1e-67 C2PG08.1 C2PG08_BACCE Glycosyltransferase 248 9e-64 C3I1S6.1 C3I1S6_BACTU Glycosyltransferase 248 1e-63 C3ELP4.1 C3ELP4_BACTK Glycosyltransferase 247 2e-63 >B8I974.1 B8I974_CLOCE Glycosyltransferase, MGT family Length = 417 Score = 328 bits (841), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 166/412 (40%), Positives = 261/412 (63%), Gaps = 6/412 (1%) Query: 1 VSKIVFLSFPFYSHVMPTLTLVRELVSRGEEVIYYSNESFRETIEAMGVTFRSYGHARGM 60 +SK++FL + F H+ PTL LV ELV+RGEEVIYYS + F + IEA G FR YG + Sbjct: 1 MSKVIFLGYLFQGHINPTLGLVNELVNRGEEVIYYSGKEFCKKIEATGAKFRDYGFIQDP 60 Query: 61 FDNSATTIEVEHPKVLLNYLVPGVIEKSKKIINAILPEVMADNPDYIIRDCDAFWGKQLA 120 +++ T +V+ +V V+ K+II+ I E+ AD PDYII D AFWGK++A Sbjct: 61 SESNKTQ-KVQGNLDAFAQVVTWVLNVGKQIISNISSEIEADRPDYIIHDSQAFWGKRIA 119 Query: 121 SVLDVPVLCYVLTFAINKTMIDAAPLYFLENVFRIPPDKGQEYLDSLGKSRLSEELDVMS 180 L +P + + +FA+ M+D P +F+EN+ R+P L + KS + LD++S Sbjct: 120 GSLGIPAVSSIASFALTGKMLDIDPDFFIENMLRMP----NASLFAKKKSNIVRLLDLLS 175 Query: 181 KQIAMAHGIKDFDALDAFTGREELNIVYTTKEFQPFADTFDESYAFIGPNIRQDRTGVDS 240 ++I+ A+ DF+ D +LNIVYT++ FQP+ + FD+S+ F+G +I + VD Sbjct: 176 RRISAAYDEPDFNIYDFANNTGKLNIVYTSEYFQPYGEVFDDSFKFVGHSIFKRTENVDF 235 Query: 241 RIEEMSGKPLIYISLGSIYTNRPGFYQKCFDAFRDTEWQIVMSIGSLVDIGDI-PVPDNF 299 +++ PLIYI+LG++ TNR FY++CF AF D E Q+V+S+G+ VD+ + +PDNF Sbjct: 236 PFDKLGSLPLIYIALGTVRTNRLDFYRECFSAFGDMEIQVVLSVGTNVDVYQLGKIPDNF 295 Query: 300 YLSAFHPQMDVLERADVFITHGGYNSVCEAVHNNVPMIMFPQGADQFTISSHLDDMEAGI 359 + + PQ+++L+ A VFITHGG NSV E ++NNVP+I++PQG D ++ ++++ AGI Sbjct: 296 IVRNYVPQLEILKYASVFITHGGTNSVNEGLYNNVPLIVYPQGDDNHIVAGRVENLGAGI 355 Query: 360 YVRNSEISPRELRETAYKIYQDKKYKENGDKLKRSFQLSGGVRLAVDSIFSF 411 Y++N +I+ EL+ ++ D+ +K N + + + +GG AVD IF F Sbjct: 356 YLKNDDINAEELKNAISRVLSDENFKINSKAIGDTLKTAGGYLRAVDEIFKF 407 >B8I5C7.1 B8I5C7_CLOCE Glycosyltransferase, MGT family Length = 398 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 145/417 (34%), Positives = 235/417 (56%), Gaps = 23/417 (5%) Query: 1 VSKIVFLSFPFYSHVMPTLTLVRELVSRGEEVIYYSNESFRETIEAMGVTFRSYGHARGM 60 +SK+ F S PF HV P + L RELV +GEEVIYY ESFRE IE+ G FRSYG+ + Sbjct: 1 MSKVFFFSIPFCGHVNPGVGLARELVEKGEEVIYYCIESFREKIESSGAVFRSYGNKFYL 60 Query: 61 FDNSATTIEVEHPKVLLNYLVPGVIEKSKKIINAILPEVMADNPDYIIRDCDAFWGKQLA 120 D+ T +E +V L E S+ I+ +L ++ D PDYII D + WGK A Sbjct: 61 NDDFVTHNNIEILRVHL--------ELSEIIMEQLLNDIKRDKPDYIIHDFMSTWGKHAA 112 Query: 121 SVLDVPVLCYVLTFAINKTMIDAAPLYFLENVFRIPPDKGQEYLDSLGKSRLSEELDVMS 180 ++P + T FL F+I + + +D +R ++ ++ Sbjct: 113 QASNIPAVNIYTTLVERPEGFLKTAGLFLAVAFQILKNIPR-MIDICKITRRLKKYNIKV 171 Query: 181 KQIAMAHGIKDFDALDAFTGREELNIVYTTKEFQPFADTFDESYAFIGP-NIRQDRTGVD 239 K + +D E L++V+T+++FQP+A+ F + Y F GP ++ ++ D Sbjct: 172 KSL-----------IDIIDNNEALSLVFTSRKFQPYAEKFGDEYKFTGPVSMHRNEKIKD 220 Query: 240 SRIEEMSGKPLIYISLGSIYTNRPGFYQKCFDAFRDTEWQIVMSIGSLVDIGDIPVPDNF 299 R+ +G+ L++ISLG+++ N F+ +C AF + + I MS+G +DI + +P+NF Sbjct: 221 FRVNRSAGRSLLFISLGTVFNNDRNFFTQCIKAFGNMDIDIFMSVGKKIDISSLTIPENF 280 Query: 300 YLSAFH--PQMDVLERADVFITHGGYNSVCEAVHNNVPMIMFPQGADQFTISSHLDDMEA 357 + F PQ++VL+ DVFITHGG NSV E + N +P+I+ PQ +Q ++ + + + Sbjct: 281 TVKYFFEIPQLEVLKECDVFITHGGMNSVHEGLMNGIPLIVVPQQLEQTHMAKRVAETGS 340 Query: 358 GIYVRNSEISPRELRETAYKIYQDKKYKENGDKLKRSFQLSGGVRLAVDSIFSFLRQ 414 GIY+ SE++P L+++ KI D Y +N +K+K SF +GG + AV+ IFS++++ Sbjct: 341 GIYLDMSEVTPESLKKSYKKIISDGSYSKNAEKMKNSFLNAGGPKRAVEEIFSYIKE 397 >C2PG08.1 C2PG08_BACCE Glycosyltransferase Length = 400 Score = 248 bits (632), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 144/422 (34%), Positives = 234/422 (55%), Gaps = 33/422 (7%) Query: 1 VSKIVFLSFPFYSHVMPTLTLVRELVSRGEEVIYYSNESFRETIEAMGVTFRSYGHARGM 60 V++++F++ H+ PTL +V ELVSRGEEV+Y+S ESFR+ IE G T R+ + + Sbjct: 4 VARVLFINTGSEGHINPTLQVVEELVSRGEEVVYFSIESFRDRIERTGATVRTIDEQKFL 63 Query: 61 FDNSATTIEVEHPKVLL----NYL---VPGVIEKSKKIINAILPEVMADNPDYIIRDCDA 113 K L NYL + G++ + II +L ++ ++ DYII D Sbjct: 64 -------------KAFLSGGRNYLSERINGLLHTADVIIPNVLEQIEGEHFDYIIHDSMF 110 Query: 114 FWGKQLASVLDVPVLCYVLTFAINKTMIDAAPLYFLENVFRIPPDKGQEYLDSLGKSRLS 173 G +A +L +P + +FA ++ + + +N+ P + Q+ ++ Sbjct: 111 GCGHIIAQILKLPAINSCTSFAQDEKSFEKMLDHLSKNI----PVEVQD--------KIH 158 Query: 174 EELDVMSKQIAMAHGIKDFDALDAFTGREELNIVYTTKEFQPFADTFDESYAFIGPNIRQ 233 + + ++K IA +G++ + F L IVYT KEFQPF D FDE++ F+GP+I + Sbjct: 159 NDFESLTKGIAEKYGVEINSQYEVFCNPAPLTIVYTIKEFQPFGDMFDETFKFVGPSISR 218 Query: 234 DRTGVDSRIEEMSGKPLIYISLGSIYTNRPGFYQKCFDAFRDTEWQIVMSIGSLVDIGDI 293 + I + K IYISLG+++ FY+ C +AF ++++ IVMSIG+ I D+ Sbjct: 219 QVKNKEFDITTLEEKSPIYISLGTVFNEALDFYKLCMEAFENSDYTIVMSIGNKTKISDL 278 Query: 294 -PVPDNFYLSAFHPQMDVLERADVFITHGGYNSVCEAVHNNVPMIMFPQGADQFTISSHL 352 +P NF + + PQ +L A +FITHGG NS E ++N +P+I+ PQ ADQ I+ + Sbjct: 279 GNIPKNFIVKNYVPQTKLLAYAKLFITHGGMNSTHEGLNNGIPLIVIPQSADQPVIAKQV 338 Query: 353 DDMEAGIYVRNSEISPRELRETAYKIYQDKKYKENGDKLKRSFQLSGGVRLAVDSIFSFL 412 +D+ AGI + +E++ +LRE+ + + YKE LK SF+ SGG + A D IF+F+ Sbjct: 339 EDLGAGIKLSINELTVEQLRESVEFVLNNPSYKEAALNLKESFRKSGGYKEATDEIFTFI 398 Query: 413 RQ 414 Q Sbjct: 399 GQ 400 >C3I1S6.1 C3I1S6_BACTU Glycosyltransferase Length = 397 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 140/415 (33%), Positives = 226/415 (54%), Gaps = 19/415 (4%) Query: 1 VSKIVFLSFPFYSHVMPTLTLVRELVSRGEEVIYYSNESFRETIEAMGVTFRSYGHARGM 60 +++++F++ H+ PTL +V EL+SRGEEV+Y+S E+FRE IE G T R+ + Sbjct: 1 MARVLFINAGSEGHINPTLPVVEELISRGEEVVYFSIEAFRERIEKTGATVRT------I 54 Query: 61 FDNSATTIEVEHPKVLLNYLVPGVIEKSKKIINAILPEVMADNPDYIIRDCDAFWGKQLA 120 D + + L + G++ + +I ++L ++ ++ DYII D G +A Sbjct: 55 DDQKFIKAFLSGGRNYLQERINGLLHTADVVIPSVLEQIEGEHFDYIIHDSMFGCGHLIA 114 Query: 121 SVLDVPVLCYVLTFAINKTMIDAAPLYFLENVFRIPPDKGQEYLDSLGKSRLSEELDVMS 180 +L +P + +FA ++ + Y +N+ P + Q+ R+ + ++ Sbjct: 115 QILKLPAINSCTSFAQDEKSFEQTLSYLSKNI----PLEAQD--------RIHNDFQSLA 162 Query: 181 KQIAMAHGIKDFDALDAFTGREELNIVYTTKEFQPFADTFDESYAFIGPNIRQDRTGVDS 240 K IA +G++ + F L IVYT KEFQPF DTFDE+Y F+GP+I + D Sbjct: 163 KGIAEKYGVEIKSPYEVFCNPAPLTIVYTIKEFQPFGDTFDETYKFVGPSISAEVKNKDV 222 Query: 241 RIEEMSGKPLIYISLGSIYTNRPGFYQKCFDAFRDTEWQIVMSIGSLVDIGDI-PVPDNF 299 + K IYISLG+++ FY+ C AF ++E IVMSIG+ I D+ +P NF Sbjct: 223 DFISIEEKSPIYISLGTVFNEALDFYKLCMKAFENSEHTIVMSIGNKTKISDLGEIPKNF 282 Query: 300 YLSAFHPQMDVLERADVFITHGGYNSVCEAVHNNVPMIMFPQGADQFTISSHLDDMEAGI 359 + + PQ ++L +FITHGG NS E ++N VP+++ PQ ADQ I+ ++ + G+ Sbjct: 283 IVKNYVPQTELLTYTKLFITHGGMNSTHEGLYNGVPLVVIPQSADQPVIAKQVESLGIGV 342 Query: 360 YVRNSEISPRELRETAYKIYQDKKYKENGDKLKRSFQLSGGVRLAVDSIFSFLRQ 414 + +I+ +LRE + YKE LK SF+ SGG + AVD IF+F+ Q Sbjct: 343 QLHMKDITEDQLRENVELVLNSPSYKEAALNLKESFRKSGGYKQAVDEIFTFVGQ 397 >C3ELP4.1 C3ELP4_BACTK Glycosyltransferase Length = 400 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 140/415 (33%), Positives = 228/415 (54%), Gaps = 19/415 (4%) Query: 1 VSKIVFLSFPFYSHVMPTLTLVRELVSRGEEVIYYSNESFRETIEAMGVTFRSYGHARGM 60 +++++F++ H+ PTL +V EL+SRGEEV+Y+S E+FR+ IE G T R+ + Sbjct: 4 MARVLFINAGSEGHINPTLQVVEELISRGEEVVYFSIEAFRDRIEKTGATVRT------I 57 Query: 61 FDNSATTIEVEHPKVLLNYLVPGVIEKSKKIINAILPEVMADNPDYIIRDCDAFWGKQLA 120 D + + L + G++ + +I+++L ++ ++ DY+I D G +A Sbjct: 58 DDQKFIKAFLSGGRNYLQERINGLLHTADIVISSVLEQIEGEHFDYMIHDSMFGCGHLIA 117 Query: 121 SVLDVPVLCYVLTFAINKTMIDAAPLYFLENVFRIPPDKGQEYLDSLGKSRLSEELDVMS 180 +L +P + +FA ++ + + +N+ DK Q +L + Sbjct: 118 QILKLPAINSCTSFAQDEKSFEQMLGHLSKNIPVEIHDKIQNDFQNL------------T 165 Query: 181 KQIAMAHGIKDFDALDAFTGREELNIVYTTKEFQPFADTFDESYAFIGPNIRQDRTGVDS 240 K IA +G++ + + F L IVYT KEFQPF DTFDE+Y F+GP+I D Sbjct: 166 KGIAEKYGVEIKSSYEVFCNPAPLTIVYTIKEFQPFGDTFDETYKFVGPSISAQMKNRDV 225 Query: 241 RIEEMSGKPLIYISLGSIYTNRPGFYQKCFDAFRDTEWQIVMSIGSLVDIGDI-PVPDNF 299 + K IYISLG+++ FY+ C AF ++E IVMSIG+ I D+ +P NF Sbjct: 226 DFTSIEEKSPIYISLGTVFNEAIDFYKLCMKAFENSEHTIVMSIGNKTKISDLGEIPKNF 285 Query: 300 YLSAFHPQMDVLERADVFITHGGYNSVCEAVHNNVPMIMFPQGADQFTISSHLDDMEAGI 359 + + PQ ++L +FITHGG NS E ++N VP+++ PQ ADQ I+ ++ + AG+ Sbjct: 286 IVKNYVPQTELLTYTKLFITHGGMNSTHEGLYNGVPLVVIPQSADQPAIAKQVESLGAGV 345 Query: 360 YVRNSEISPRELRETAYKIYQDKKYKENGDKLKRSFQLSGGVRLAVDSIFSFLRQ 414 + +E++ +LRE+ I + YKE LK SF+ SGG + AVD IF+F+ Q Sbjct: 346 QLHMNELTVEKLRESVELILNNPSYKEAALNLKESFRTSGGYKEAVDEIFTFVGQ 400 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,496,200,324 Number of extensions: 107413348 Number of successful extensions: 256239 Number of sequences better than 1.0e-05: 614 Number of HSP's gapped: 256163 Number of HSP's successfully gapped: 644 Length of query: 417 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 279 Effective length of database: 1,760,596,133 Effective search space: 491206321107 Effective search space used: 491206321107 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)