BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0560.0023.p (243 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q1LDL8.1 Q1LDL8_RALME SMC protein-like protein 298 2e-79 B9E068.1 B9E068_CLOK1 Putative uncharacterized protein 298 3e-79 A5N6P9.1 A5N6P9_CLOK5 Predicted ATP-binding protein 298 3e-79 A6LZ05.1 A6LZ05_CLOB8 SMC domain protein 298 4e-79 A6VY51.1 A6VY51_MARMS SMC domain protein 294 6e-78 >Q1LDL8.1 Q1LDL8_RALME SMC protein-like protein Length = 264 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 143/248 (57%), Positives = 182/248 (73%), Gaps = 8/248 (3%) Query: 4 MISDLYVRQARINQSSIPGPRRYPFSLPVIRNIHQIDFEGKVTFFVGENGTGKSTLLEAI 63 M+S +V + + + +PG RYPFSLP +R + +D +VTF VGENG+GKSTLLE I Sbjct: 16 MLSSQFVSRVTLLRDKVPGFDRYPFSLPAVRELETLDLHPRVTFLVGENGSGKSTLLEGI 75 Query: 64 AANFGFNPEGGSRNFNFSTQASHSELYEYMTLVKGARRPKDGFFLRAESFYNVATEVDQL 123 A GFN EGGSRNF+F+T+ASHS+L+EY+ + KG RRP G+FLRAESFYNVATE+++L Sbjct: 76 AVALGFNAEGGSRNFSFATRASHSDLHEYLRIAKGVRRPSTGYFLRAESFYNVATEIERL 135 Query: 124 AAA--------RSYGGKSLHAQSHGESFMSLLLHRFWGNGLYILDEPEAALSPSRQFALI 175 A SYGG SLH QSHGE+F++LL RF G GLYILDEPEAALSP+RQ A+I Sbjct: 136 DAEPGLGAPVINSYGGHSLHEQSHGEAFLTLLTERFQGKGLYILDEPEAALSPARQLAVI 195 Query: 176 ARMDQLVRQNSQFIIATHSPILLAYPGAGIYVLGEEGLTKTPYEATEHYLLTKAFLNNPQ 235 +R+ LVR+ SQF+IATHSPIL+AYP A IY G+ Y+ TEHY +T+ FL +P+ Sbjct: 196 SRLHDLVREGSQFVIATHSPILMAYPDACIYQCSARGIEPIAYQDTEHYQITRDFLVDPE 255 Query: 236 GMLRELMD 243 MLR LM+ Sbjct: 256 RMLRVLME 263 >B9E068.1 B9E068_CLOK1 Putative uncharacterized protein Length = 244 Score = 298 bits (762), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 136/234 (58%), Positives = 184/234 (78%), Gaps = 1/234 (0%) Query: 9 YVRQARINQSSIPGPRRYPFSLPVIRNIHQIDFEGKVTFFVGENGTGKSTLLEAIAANFG 68 Y+R ++ + I +YP+ L ++++ ++F KVT+ VGENGTGKST+LEAIA +G Sbjct: 9 YLRCVKLCREKIHSFSKYPYCLSAVKDLSMLEFHPKVTYIVGENGTGKSTILEAIAVAYG 68 Query: 69 FNPEGGSRNFNFSTQASHSELYEYMTLVKGARRPKDGFFLRAESFYNVATEVDQLAAARS 128 FNPEGG+RNFNFST+ +HS+LY + LVKG +RP DGFFLRAESFYNVAT +D++ A+ S Sbjct: 69 FNPEGGTRNFNFSTKDTHSDLYRNLKLVKGVKRPNDGFFLRAESFYNVATNIDEIDASSS 128 Query: 129 YGGKSLHAQSHGESFMSLLLHRFWGNGLYILDEPEAALSPSRQFALIARMDQLVRQNSQF 188 YGG SLH QSHGESF+S++ +RF GNGLYILDEPEAALSPS+Q +LI M++L+++ SQF Sbjct: 129 YGGISLHLQSHGESFLSVIGNRFSGNGLYILDEPEAALSPSKQMSLIVIMNKLIQKKSQF 188 Query: 189 IIATHSPILLAYPGAGIYVLGEEGLTKTPYEATEHYLLTKAFLNNPQGMLRELM 242 IIATHSPI+++YP + IY L +G+ + Y+ TEHY +TKAFL+ P+ ML L+ Sbjct: 189 IIATHSPIIMSYPDSIIYELS-DGIKEVKYKDTEHYKITKAFLDRPEKMLEMLL 241 >A5N6P9.1 A5N6P9_CLOK5 Predicted ATP-binding protein Length = 244 Score = 298 bits (762), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 136/234 (58%), Positives = 184/234 (78%), Gaps = 1/234 (0%) Query: 9 YVRQARINQSSIPGPRRYPFSLPVIRNIHQIDFEGKVTFFVGENGTGKSTLLEAIAANFG 68 Y+R ++ + I +YP+ L ++++ ++F KVT+ VGENGTGKST+LEAIA +G Sbjct: 9 YLRCVKLCREKIHSFSKYPYCLSAVKDLSMLEFHPKVTYIVGENGTGKSTILEAIAVAYG 68 Query: 69 FNPEGGSRNFNFSTQASHSELYEYMTLVKGARRPKDGFFLRAESFYNVATEVDQLAAARS 128 FNPEGG+RNFNFST+ +HS+LY + LVKG +RP DGFFLRAESFYNVAT +D++ A+ S Sbjct: 69 FNPEGGTRNFNFSTKDTHSDLYRNLKLVKGVKRPNDGFFLRAESFYNVATNIDEIDASSS 128 Query: 129 YGGKSLHAQSHGESFMSLLLHRFWGNGLYILDEPEAALSPSRQFALIARMDQLVRQNSQF 188 YGG SLH QSHGESF+S++ +RF GNGLYILDEPEAALSPS+Q +LI M++L+++ SQF Sbjct: 129 YGGISLHLQSHGESFLSVIGNRFSGNGLYILDEPEAALSPSKQMSLIVIMNKLIQKKSQF 188 Query: 189 IIATHSPILLAYPGAGIYVLGEEGLTKTPYEATEHYLLTKAFLNNPQGMLRELM 242 IIATHSPI+++YP + IY L +G+ + Y+ TEHY +TKAFL+ P+ ML L+ Sbjct: 189 IIATHSPIIMSYPDSIIYELS-DGIKEVKYKDTEHYKITKAFLDRPEKMLEMLL 241 >A6LZ05.1 A6LZ05_CLOB8 SMC domain protein Length = 248 Score = 298 bits (762), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 136/243 (55%), Positives = 189/243 (77%), Gaps = 9/243 (3%) Query: 4 MISDLYVRQARINQSSIPGPRRYPFSLPVIRNIHQIDFEGKVTFFVGENGTGKSTLLEAI 63 + ++Y+++ R+ + I Y LPV+ N+ +D VTFFVGENG+GKSTLLEAI Sbjct: 2 LYDNMYIKEIRL-KKEIHKDDSYIKELPVVNNLTSLDISRNVTFFVGENGSGKSTLLEAI 60 Query: 64 AANFGFNPEGGSRNFNFSTQASHSELYEYMTLVKGARRPKDGFFLRAESFYNVATEVDQL 123 A N GFN EGG++NF FS++ +HS+LY+Y+T+VKG +RP+DGFFLRAESFYNVATE+++L Sbjct: 61 AVNSGFNAEGGTKNFCFSSRETHSDLYKYITVVKGVQRPRDGFFLRAESFYNVATEIEKL 120 Query: 124 A--------AARSYGGKSLHAQSHGESFMSLLLHRFWGNGLYILDEPEAALSPSRQFALI 175 +SYGG SLH SHGESF++L+ +RF GNGLYILDEPEAALSP +Q A++ Sbjct: 121 DLESSGGVPVIKSYGGTSLHKMSHGESFITLMTNRFSGNGLYILDEPEAALSPLKQMAML 180 Query: 176 ARMDQLVRQNSQFIIATHSPILLAYPGAGIYVLGEEGLTKTPYEATEHYLLTKAFLNNPQ 235 +++LV++ SQFIIATHSPIL+AYPGA I+V+ ++G+TKTPY+ T++Y++T+ FL NP+ Sbjct: 181 TIINELVKKRSQFIIATHSPILMAYPGADIFVIDDDGITKTPYKKTDNYMITRKFLENPE 240 Query: 236 GML 238 M+ Sbjct: 241 KMM 243 >A6VY51.1 A6VY51_MARMS SMC domain protein Length = 250 Score = 294 bits (752), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 142/241 (58%), Positives = 181/241 (75%), Gaps = 8/241 (3%) Query: 9 YVRQARINQSSIPGPRRYPFSLPVIRNIHQIDFEGKVTFFVGENGTGKSTLLEAIAANFG 68 Y++ + + I YPFS+P ++ + I+F+ VT FVGENG+GKSTLLEAIA + G Sbjct: 8 YLKTIELKRDLIDSFDVYPFSIPAVKELDFIEFDKAVTIFVGENGSGKSTLLEAIAVSMG 67 Query: 69 FNPEGGSRNFNFSTQASHSELYEYMTLVKGARRPKDGFFLRAESFYNVATEVDQLAA--- 125 FN EGG++NFNF T+++HS+L+ Y+ L K +R +DGFFLRAESFYNVAT +D+L Sbjct: 68 FNAEGGTKNFNFGTRSTHSDLHSYLRLSKSFKRYRDGFFLRAESFYNVATNIDELDEDPS 127 Query: 126 -----ARSYGGKSLHAQSHGESFMSLLLHRFWGNGLYILDEPEAALSPSRQFALIARMDQ 180 SYGGKSLH QSHGESF++L+L RF GNGLY+LDEPEAALSP+RQ A+++RM Q Sbjct: 128 PAPFIKDSYGGKSLHHQSHGESFLALMLKRFGGNGLYLLDEPEAALSPTRQLAVLSRMHQ 187 Query: 181 LVRQNSQFIIATHSPILLAYPGAGIYVLGEEGLTKTPYEATEHYLLTKAFLNNPQGMLRE 240 L+ SQFIIATHSPIL+AYPGA IY + + G+ YE TEHY +TKAFLNNP+ MLRE Sbjct: 188 LINNQSQFIIATHSPILMAYPGAKIYQIDKTGIYPVKYEDTEHYGVTKAFLNNPEPMLRE 247 Query: 241 L 241 L Sbjct: 248 L 248 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,496,963,316 Number of extensions: 62969017 Number of successful extensions: 343483 Number of sequences better than 1.0e-05: 233 Number of HSP's gapped: 343538 Number of HSP's successfully gapped: 234 Length of query: 243 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 111 Effective length of database: 1,817,122,223 Effective search space: 201700566753 Effective search space used: 201700566753 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)